Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,372,763	T→C	D158G (GAC→GGC)	yjeK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,372,763	0	T	C	100.0%	845.3 / NA	243	D158G (GAC→GGC)	yjeK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (102/141); total (102/141)

Only 100 of 257 total aligned reads displayed.

ATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGTCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGG  >  NC_000913/4372673‑4372852

atatGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGccc                                                                                         <  1:638345/93‑1 (MQ=255)

atatGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGccc                                                                                         <  1:5095514/93‑1 (MQ=255)

atatGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGccc                                                                                         <  1:4772944/93‑1 (MQ=255)

 tatGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCa                                                                                        <  2:4882187/93‑1 (MQ=255)

 tatGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCa                                                                                        <  2:4032181/93‑1 (MQ=255)

 tatGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCa                                                                                        >  2:5558867/1‑93 (MQ=255)

    gCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGtt                                                                                     <  1:2409120/93‑1 (MQ=255)

     cGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTc                                                                                    <  1:326285/93‑1 (MQ=255)

      gggATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTcc                                                                                   <  2:505896/93‑1 (MQ=255)

       ggATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCg                                                                                  <  1:2728677/93‑1 (MQ=255)

        gATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCgg                                                                                 <  2:3318645/93‑1 (MQ=255)

         aTGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGa                                                                                >  2:5915640/1‑93 (MQ=255)

          tGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGAt                                                                               >  2:5887597/1‑93 (MQ=255)

          tGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGAt                                                                               >  1:4959932/1‑93 (MQ=255)

          tGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGAt                                                                               >  2:5259744/1‑93 (MQ=255)

           ggCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTTGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATg                                                                              >  1:3373666/1‑93 (MQ=255)

           ggCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATg                                                                              >  1:953356/1‑93 (MQ=255)

           ggCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATg                                                                              >  2:4157314/1‑93 (MQ=255)

            gCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATgc                                                                             <  2:1242991/93‑1 (MQ=255)

            gCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATgc                                                                             <  2:4736837/93‑1 (MQ=255)

              ttCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATgcgc                                                                           <  1:1907928/93‑1 (MQ=255)

               tCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCgca                                                                          <  1:1034065/93‑1 (MQ=255)

               tCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCgca                                                                          <  2:4639451/93‑1 (MQ=255)

                   gTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCaa                                                                      <  1:5584237/93‑1 (MQ=255)

                    ttGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAAc                                                                     <  1:2045903/93‑1 (MQ=255)

                    ttGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAAc                                                                     <  1:4714433/93‑1 (MQ=255)

                    ttGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATCCGCAGCAAc                                                                     <  2:1384843/93‑1 (MQ=255)

                       tgtgAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGCTCCGGATGCGCAGCAACATa                                                                  >  2:6410648/1‑93 (MQ=255)

                        gtgAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATAc                                                                 <  1:143936/93‑1 (MQ=255)

                        gtgAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCAGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATAc                                                                 <  2:4535152/93‑1 (MQ=255)

                        gtgAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCAGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATAc                                                                 <  2:3447226/93‑1 (MQ=255)

                         tgAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACt                                                                <  2:4948805/93‑1 (MQ=255)

                         tgAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACt                                                                <  2:2319241/93‑1 (MQ=255)

                           aGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCa                                                              >  1:4253063/1‑93 (MQ=255)

                           aGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCa                                                              >  2:5861147/1‑93 (MQ=255)

                           aGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCa                                                              >  1:4143296/1‑93 (MQ=255)

                            gCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCaa                                                             <  2:4362381/93‑1 (MQ=255)

                             gaaCCAGTCCTGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAg                                                            <  1:119308/92‑1 (MQ=255)

                              aaCCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGt                                                           >  2:4791464/1‑93 (MQ=255)

                               aCCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTg                                                          >  2:4053966/1‑93 (MQ=255)

                               aCCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTg                                                          >  1:1362116/1‑93 (MQ=255)

                                 cAGTCCAGCTCGTGATCTTTAGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCa                                                        <  1:702383/93‑1 (MQ=255)

                                   gTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGt                                                      <  2:2484214/93‑1 (MQ=255)

                                   gTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGt                                                      <  1:3299027/93‑1 (MQ=255)

                                    tCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGtt                                                     <  1:5461295/93‑1 (MQ=255)

                                     ccAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGttt                                                    >  2:3582812/1‑93 (MQ=255)

                                     ccAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGttt                                                    <  2:3124863/93‑1 (MQ=255)

                                     ccAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGttt                                                    <  1:1111448/93‑1 (MQ=255)

                                       aGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGc                                                  <  2:1110142/93‑1 (MQ=255)

                                       aGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGc                                                  >  1:5355121/1‑93 (MQ=255)

                                        gCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGcc                                                 <  1:1276792/93‑1 (MQ=255)

                                          tCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAg                                               <  2:5791885/93‑1 (MQ=255)

                                            gTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGtt                                             >  2:4411399/1‑93 (MQ=255)

                                             tGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTa                                            <  1:300881/93‑1 (MQ=255)

                                             tGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTa                                            <  1:4518869/93‑1 (MQ=255)

                                               aTCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACg                                          <  2:2955796/93‑1 (MQ=255)

                                                tCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGc                                         >  1:6422507/1‑93 (MQ=255)

                                                tCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGc                                         <  2:2190610/93‑1 (MQ=255)

                                                tCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGc                                         <  1:761/93‑1 (MQ=255)

                                                 cTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCt                                        <  2:1266887/93‑1 (MQ=255)

                                                    tCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCttgt                                     >  2:5720569/1‑93 (MQ=255)

                                                     cGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCttgtt                                    <  2:6285703/93‑1 (MQ=255)

                                                     cGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCttgtt                                    >  2:6380489/1‑93 (MQ=255)

                                                     cGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCttgtt                                    <  1:4168407/93‑1 (MQ=255)

                                                      gCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCttgttg                                   >  2:4482396/1‑93 (MQ=255)

                                                       ccATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGc                                  >  1:3840414/1‑93 (MQ=255)

                                                        cATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGcc                                 >  1:3621751/1‑93 (MQ=255)

                                                        cATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGcc                                 >  1:483414/1‑93 (MQ=255)

                                                        cATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGcc                                 <  1:3082771/93‑1 (MQ=255)

                                                        cATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGcc                                 <  2:3719025/93‑1 (MQ=255)

                                                           cAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTg                              >  2:2461479/1‑93 (MQ=255)

                                                            aGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGa                             <  2:5657403/93‑1 (MQ=255)

                                                            aGCGGATCGCCACCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGa                             >  1:3806278/1‑93 (MQ=255)

                                                              cGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGAtt                           <  2:3432988/93‑1 (MQ=255)

                                                              cGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGAtt                           >  1:6281441/1‑93 (MQ=255)

                                                               ggATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGAttt                          >  2:3402254/1‑93 (MQ=255)

                                                                gATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGCGCAGTTTGCCAGTTACGCTTGTTGCCCTGAtttt                         <  2:1800545/93‑1 (MQ=255)

                                                                 aTCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTc                        <  1:2436047/93‑1 (MQ=255)

                                                                      cgccgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTAAGCTTGTTGCCCTGATTTTCGGCAt                   >  1:5736904/1‑93 (MQ=255)

                                                                       gccgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATa                  >  2:6250833/1‑93 (MQ=255)

                                                                       gccgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATa                  <  2:686139/93‑1 (MQ=255)

                                                                       gccgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATa                  <  1:3964220/93‑1 (MQ=255)

                                                                       gccgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATa                  >  1:3464139/1‑93 (MQ=255)

                                                                       gccgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATa                  <  1:4579080/93‑1 (MQ=255)

                                                                        ccgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAg                 <  2:101850/93‑1 (MQ=255)

                                                                         cgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAgg                >  1:3368172/1‑93 (MQ=255)

                                                                         cgGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAgg                <  1:2033645/93‑1 (MQ=255)

                                                                          ggAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGGTACGCTTGTTGCCCTGATTTTCGGCATAcgg               >  1:1892413/1‑93 (MQ=255)

                                                                           gagaAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAgggg              >  1:4079802/1‑93 (MQ=255)

                                                                           gagaAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTCGTTGCCCTGATTTTCGGCATAgggg              >  1:4294819/1‑93 (MQ=255)

                                                                             gaAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGaa            <  1:267953/93‑1 (MQ=255)

                                                                               aaaTCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCGCTGATTTTCGGCATAGGGGAAGt          <  1:2769325/93‑1 (MQ=255)

                                                                               aaaTCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGt          >  1:619956/1‑93 (MQ=255)

                                                                               aaaTCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGt          >  1:6122064/1‑93 (MQ=255)

                                                                               aaaTCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGt          >  1:5703380/1‑93 (MQ=255)

                                                                               aaaTCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGt          >  2:3001346/1‑93 (MQ=255)

                                                                                    atcTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTgacga     >  1:2163898/1‑93 (MQ=255)

                                                                                    atcTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTgacga     <  2:1699998/93‑1 (MQ=255)

                                                                                    atcTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTgacga     <  1:5936663/93‑1 (MQ=255)

                                                                                    atcTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTgacga     <  2:5199836/93‑1 (MQ=255)

ATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGTCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGG  >  NC_000913/4372673‑4372852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGTCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGGAAGC  >  NC_000913/4372671‑4372856

TTATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCC                                                                                              >  SRR4302534.2093849/1‑94 (MQ=60)

TTATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCC                                                                                              <  SRR4302534.3990342/94‑1 (MQ=60)

 TATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCC                                                                                             >  SRR4302534.2086908/1‑94 (MQ=60)

  ATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCA                                                                                            <  SRR4302534.653836/94‑1 (MQ=60)

  ATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCA                                                                                            <  SRR4302534.4902532/94‑1 (MQ=60)

  ATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCA                                                                                            <  SRR4302534.5233051/94‑1 (MQ=60)

  ATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCA                                                                                            <  SRR4302534.1621309/94‑1 (MQ=60)

   TATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAG                                                                                           <  SRR4302534.3239211/94‑1 (MQ=60)

   TATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAG                                                                                           <  SRR4302534.4991005/94‑1 (MQ=60)

     TGCGGGATGGCTTCCAGTTGTGTTAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTT                                                                                         <  SRR4302534.683377/94‑1 (MQ=60)

     TGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTT                                                                                         <  SRR4302534.4364806/94‑1 (MQ=60)

     TGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGGT                                                                                         >  SRR4302534.5296446/1‑94 (MQ=60)

      GCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTC                                                                                        <  SRR4302534.1018819/94‑1 (MQ=60)

      GCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTC                                                                                        <  SRR4302534.2473157/94‑1 (MQ=60)

      GCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTC                                                                                        <  SRR4302534.3481820/94‑1 (MQ=60)

      GCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTC                                                                                        <  SRR4302534.744661/94‑1 (MQ=60)

      GCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTC                                                                                        <  SRR4302534.6565864/94‑1 (MQ=60)

       CGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCC                                                                                       >  SRR4302534.5829266/1‑94 (MQ=60)

       CGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCC                                                                                       <  SRR4302534.334669/94‑1 (MQ=60)

        GGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCG                                                                                      >  SRR4302534.5600102/1‑94 (MQ=60)

        GGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCG                                                                                      <  SRR4302534.1085688/94‑1 (MQ=60)

        GGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCG                                                                                      <  SRR4302534.1329604/94‑1 (MQ=60)

         GGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGG                                                                                     <  SRR4302534.2800636/94‑1 (MQ=60)

          GATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGGTCTTTCGCCATCAGCGGCTCGCCGCCGGAGAAAATGATCTCGCCCAGTTCCGGA                                                                                    >  SRR4302534.4701417/1‑94 (MQ=60)

           ATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGAT                                                                                   >  SRR4302534.5094245/1‑94 (MQ=60)

           ATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGAT                                                                                   <  SRR4302534.2599967/94‑1 (MQ=60)

            TGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTTGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATG                                                                                  >  SRR4302534.3464070/1‑94 (MQ=60)

            TGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATG                                                                                  >  SRR4302534.977629/1‑94 (MQ=60)

              GCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCG                                                                                <  SRR4302534.2046677/94‑1 (MQ=60)

               CTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGC                                                                               >  SRR4302534.4394809/1‑94 (MQ=60)

                TTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCA                                                                              <  SRR4302534.6055184/94‑1 (MQ=60)

                TTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCA                                                                              <  SRR4302534.1957716/94‑1 (MQ=60)

                TTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCA                                                                              <  SRR4302534.2483102/94‑1 (MQ=60)

                 TCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAG                                                                             <  SRR4302534.1060746/94‑1 (MQ=60)

                   CAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCA                                                                           >  SRR4302534.153062/1‑94 (MQ=60)

                     GTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAAC                                                                         <  SRR4302534.5735131/94‑1 (MQ=60)

                     GTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAAC                                                                         >  SRR4302534.1295244/1‑94 (MQ=60)

                     GTTGTGTGAGCAACCAGTCCAGCTAGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAAC                                                                         <  SRR4302534.6514006/94‑1 (MQ=60)

                      TTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACA                                                                        <  SRR4302534.4842461/94‑1 (MQ=60)

                      TTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACA                                                                        <  SRR4302534.1206811/94‑1 (MQ=60)

                      TTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACA                                                                        <  SRR4302534.2099381/94‑1 (MQ=60)

                        gcgtcAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGCTGCGCAGCAACATA                                                                      <  SRR4302534.2672888/89‑1 (MQ=60)

                        GTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATA                                                                      >  SRR4302534.3032064/1‑94 (MQ=60)

                         TGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATAC                                                                     >  SRR4302534.6338144/1‑94 (MQ=60)

                          GTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACT                                                                    <  SRR4302534.147698/94‑1 (MQ=60)

                            GAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCA                                                                  >  SRR4302534.4255114/1‑94 (MQ=60)

                            GAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCA                                                                  >  SRR4302534.4367822/1‑94 (MQ=60)

                               GAACCAGTCCTGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGT                                                               <  SRR4302534.122478/94‑1 (MQ=60)

                               CAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGG                                                               >  SRR4302534.4948355/1‑94 (MQ=60)

                                AACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTG                                                              >  SRR4302534.1398008/1‑94 (MQ=60)

                                AACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTG                                                              >  SRR4302534.760135/1‑94 (MQ=60)

                                   CAGTCCAGCTCGTGATCTTTAGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAG                                                           <  SRR4302534.719605/94‑1 (MQ=60)

                                    AGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGT                                                          >  SRR4302534.1205526/1‑94 (MQ=60)

                                    AGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGT                                                          <  SRR4302534.3388277/94‑1 (MQ=60)

                                    AGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGT                                                          >  SRR4302534.3182398/1‑94 (MQ=60)

                                    AGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGT                                                          <  SRR4302534.796700/94‑1 (MQ=60)

                                     GTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTT                                                         <  SRR4302534.3387070/94‑1 (MQ=60)

                                      TCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTT                                                        <  SRR4302534.5608483/94‑1 (MQ=60)

                                       CCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTG                                                       <  SRR4302534.1140448/94‑1 (MQ=60)

                                        CAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGC                                                      <  SRR4302534.475055/94‑1 (MQ=60)

                                        CAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGC                                                      >  SRR4302534.5499486/1‑94 (MQ=60)

                                          GCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCA                                                    >  SRR4302534.2811341/1‑94 (MQ=60)

                                          GCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCA                                                    <  SRR4302534.1310397/94‑1 (MQ=60)

                                           CTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAG                                                   <  SRR4302534.3061559/94‑1 (MQ=60)

                                            TCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGT                                                  <  SRR4302534.2143254/94‑1 (MQ=60)

                                             CGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTT                                                 <  SRR4302534.277794/94‑1 (MQ=60)

                                              GTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTT                                                <  SRR4302534.3806803/94‑1 (MQ=60)

                                              GTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTA                                                <  SRR4302534.3490635/94‑1 (MQ=60)

                                               TGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTAC                                               <  SRR4302534.4641283/94‑1 (MQ=60)

                                               TGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTAA                                               <  SRR4302534.308650/94‑1 (MQ=60)

                                               TCATCTTTCGCCATAAGCGGATCCCCGCCGGAGAAAATCATCTCGCCCAGTCCCGGATGCGCAGCAACATGCTCAAGTGCAGTTTGCCAGTTAC                                               <  SRR4302534.3448685/94‑1 (MQ=60)

                                                GATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACG                                              <  SRR4302534.3938184/94‑1 (MQ=60)

                                                 ATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGC                                             >  SRR4302534.6595723/1‑94 (MQ=60)

                                                  TCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCT                                            <  SRR4302534.1379249/94‑1 (MQ=60)

                                                  TCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCT                                            >  SRR4302534.4256805/1‑94 (MQ=60)

                                                  TCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCT                                            <  SRR4302534.777/94‑1 (MQ=60)

                                                  TCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCT                                            <  SRR4302534.1399518/94‑1 (MQ=60)

                                                   CTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTT                                           >  SRR4302534.3681480/1‑94 (MQ=60)

                                                     TTCTCCATCAGCGTATCTCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGATTGT                                         <  SRR4302534.3128547/94‑1 (MQ=60)

                                                       CGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTG                                       <  SRR4302534.4281002/94‑1 (MQ=60)

                                                        GCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGC                                      >  SRR4302534.3943569/1‑94 (MQ=60)

                                                         CCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCC                                     >  SRR4302534.3719119/1‑94 (MQ=60)

                                                         CCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCC                                     >  SRR4302534.495526/1‑94 (MQ=60)

                                                         CCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCC                                     >  SRR4302534.5011072/1‑94 (MQ=60)

                                                          CATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCC                                    <  SRR4302534.2089595/94‑1 (MQ=60)

                                                          CATCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCC                                    <  SRR4302534.3163767/94‑1 (MQ=60)

                                                            TCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTG                                  <  SRR4302534.6121915/94‑1 (MQ=60)

                                                            TCAGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTG                                  <  SRR4302534.6341536/94‑1 (MQ=60)

                                                             CAGCGGATCGCCACCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGA                                 >  SRR4302534.3908479/1‑94 (MQ=60)

                                                              AGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGAT                                >  SRR4302534.4261346/1‑94 (MQ=60)

                                                              AGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGAT                                >  SRR4302534.6412934/1‑94 (MQ=60)

                                                              AGCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGAT                                <  SRR4302534.5889899/94‑1 (MQ=60)

                                                               GCGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATT                               >  SRR4302534.6451435/1‑94 (MQ=60)

                                                                CGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTT                              <  SRR4302534.5885364/94‑1 (MQ=60)

                                                                CGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTT                              >  SRR4302534.4880694/1‑94 (MQ=60)

                                                                CGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTT                              <  SRR4302534.3368032/94‑1 (MQ=60)

                                                                CGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTT                              <  SRR4302534.5293279/94‑1 (MQ=60)

                                                                CGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTT                              <  SRR4302534.2253891/94‑1 (MQ=60)

                                                                CGGATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTT                              >  SRR4302534.4324310/1‑94 (MQ=60)

                                                                  GATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTC                            >  SRR4302534.4784537/1‑94 (MQ=60)

                                                                  GATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTC                            >  SRR4302534.5153301/1‑94 (MQ=60)

                                                                   ATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCG                           <  SRR4302534.2500799/94‑1 (MQ=60)

                                                                   ATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCG                           <  SRR4302534.6608663/94‑1 (MQ=60)

                                                                   ATCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCG                           >  SRR4302534.4961137/1‑94 (MQ=60)

                                                                    TCGCCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGGGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGG                          >  SRR4302534.4599622/1‑94 (MQ=60)

                                                                       CCGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTAAGCTTGTTGCCCTGATTTTCGGCAT                       >  SRR4302534.5892376/1‑94 (MQ=60)

                                                                        CGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATA                      >  SRR4302534.3557272/1‑94 (MQ=60)

                                                                        CGCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATA                      >  SRR4302534.3998687/1‑94 (MQ=60)

                                                                         GCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAG                     <  SRR4302534.4703275/94‑1 (MQ=60)

                                                                         GCCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAG                     <  SRR4302534.4070349/94‑1 (MQ=60)

                                                                          CCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGG                    >  SRR4302534.3458410/1‑94 (MQ=60)

                                                                          CCGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGG                    <  SRR4302534.1950619/94‑1 (MQ=60)

                                                                           CGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGG                   <  SRR4302534.2830140/94‑1 (MQ=60)

                                                                           CGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGG                   >  SRR4302534.4167262/1‑94 (MQ=60)

                                                                           CGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGG                   <  SRR4302534.2086825/94‑1 (MQ=60)

                                                                           CGGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGGTACGCTTGTTGCCCTGATTTTCGGCATACGG                   >  SRR4302534.1941769/1‑94 (MQ=60)

                                                                            GGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGG                  >  SRR4302534.5663114/1‑94 (MQ=60)

                                                                            GGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGG                  >  SRR4302534.6536547/1‑94 (MQ=60)

                                                                            GGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGG                  >  SRR4302534.996795/1‑94 (MQ=60)

                                                                            GGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGG                  <  SRR4302534.4217871/94‑1 (MQ=60)

                                                                            GGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGG                  >  SRR4302534.4189313/1‑94 (MQ=60)

                                                                            GGAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTCGTTGCCCTGATTTTCGGCATAGGGG                  >  SRR4302534.4411192/1‑94 (MQ=60)

                                                                             GAGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGA                 <  SRR4302534.3592440/94‑1 (MQ=60)

                                                                              AGAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAA                <  SRR4302534.5676480/94‑1 (MQ=60)

                                                                               GAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAG               <  SRR4302534.274896/94‑1 (MQ=60)

                                                                               GAAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAG               <  SRR4302534.3461748/94‑1 (MQ=60)

                                                                                AAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGT              >  SRR4302534.601328/1‑94 (MQ=60)

                                                                                AAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGT              >  SRR4302534.6288588/1‑94 (MQ=60)

                                                                                AAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGT              <  SRR4302534.2067663/94‑1 (MQ=60)

                                                                                AAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGT              >  SRR4302534.635006/1‑94 (MQ=60)

                                                                                AAAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGT              >  SRR4302534.5857869/1‑94 (MQ=60)

                                                                                 AAATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCGCTGATTTTCGGCATAGGGGAAGTG             <  SRR4302534.2842211/94‑1 (MQ=60)

                                                                                  AATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGA            <  SRR4302534.2452280/94‑1 (MQ=60)

                                                                                   ATCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGAC           >  SRR4302534.3909644/1‑94 (MQ=60)

                                                                                    TCATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACG          <  SRR4302534.4113495/94‑1 (MQ=60)

                                                                                     CATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGA         >  SRR4302534.2221053/1‑94 (MQ=60)

                                                                                      ATCTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGAC        <  SRR4302534.6097865/94‑1 (MQ=60)

                                                                                        CTCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGG      <  SRR4302534.2515682/94‑1 (MQ=60)

                                                                                         TCGCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGGA     <  SRR4302534.4620711/94‑1 (MQ=60)

                                                                                           GCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGGAAG   >  SRR4302534.1849020/1‑94 (MQ=60)

                                                                                           GCCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGGAAG   >  SRR4302534.3558475/1‑94 (MQ=60)

                                                                                            CCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGGAAGC  >  SRR4302534.5154241/1‑94 (MQ=60)

                                                                                            CCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGGAAGC  >  SRR4302534.170557/1‑94 (MQ=60)

TTATATGCGGGATGGCTTCCAGTTGTGTGAGCAACCAGTCCAGCTCGTGATCTTTCGCCATCAGCGGATCGCCGCCGGAGAAAATCATCTCGTCCAGTTCCGGATGCGCAGCAACATACTCAAGTGCAGTTTGCCAGTTACGCTTGTTGCCCTGATTTTCGGCATAGGGGAAGTGACGACGGAAGC  >  NC_000913/4372671‑4372856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`