Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,413,828	A→G	Y19H (TAT→CAT)	b4188 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,413,828	0	A	G	100.0%	1008.5 / NA	283	Y19H (TAT→CAT)	b4188	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (146/137); total (146/137)

Only 100 of 287 total aligned reads displayed.

TGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATC  >  NC_000913/4413738‑4413917

tGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAg                                                                                         >  1:3579395/1‑93 (MQ=255)

 gCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGt                                                                                        >  2:1734036/1‑93 (MQ=255)

  cTAACTGAGATCTGACCTATTTCATTCAGGACCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTc                                                                                       >  2:3472409/1‑93 (MQ=255)

     aCTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACt                                                                                    <  2:1449124/93‑1 (MQ=255)

      cTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTa                                                                                   >  1:2073262/1‑93 (MQ=255)

      cTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTa                                                                                   <  1:3331040/93‑1 (MQ=255)

      cTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTa                                                                                   >  2:3553624/1‑93 (MQ=255)

      cTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTa                                                                                   >  2:3491589/1‑93 (MQ=255)

       tGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTaa                                                                                  >  1:5389106/1‑93 (MQ=255)

       tGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTaa                                                                                  >  1:194087/1‑93 (MQ=255)

        gagaTCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAAt                                                                                 >  2:2588851/1‑93 (MQ=255)

           aTCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGc                                                                              <  1:4029030/93‑1 (MQ=255)

           aTCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGc                                                                              <  2:5546842/93‑1 (MQ=255)

           aTCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGc                                                                              <  1:2895089/93‑1 (MQ=255)

             cTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGCTGAGTCACTAATTGCAg                                                                            >  2:1008532/1‑93 (MQ=255)

                  cTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAgg                                                                       <  1:4646101/93‑1 (MQ=255)

                  cTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAgg                                                                       >  2:5935673/1‑93 (MQ=255)

                   tATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAggg                                                                      >  2:5391206/1‑93 (MQ=255)

                    aTTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGt                                                                     <  2:3171241/93‑1 (MQ=255)

                     tttCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTg                                                                    <  1:4879760/93‑1 (MQ=255)

                      ttcattcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGa                                                                   <  1:2558/93‑1 (MQ=255)

                      ttcattcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGa                                                                   <  1:5988376/93‑1 (MQ=255)

                         attcaGGCCCGTCTCGCACTCAGCACTGGCGAATTCTCGAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGGGGc                                                                <  1:6162733/93‑1 (MQ=255)

                         attcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGc                                                                <  2:691124/93‑1 (MQ=255)

                         attcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGc                                                                >  1:1805007/1‑93 (MQ=255)

                          ttcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGCCACTAATTGCAGCGAGGGTGAGGCa                                                               >  2:3207523/1‑93 (MQ=255)

                           tcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGTCTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCaa                                                              <  1:932851/93‑1 (MQ=255)

                           tcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCaa                                                              >  1:3522109/1‑93 (MQ=255)

                           tcaGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCaa                                                              <  1:2659930/93‑1 (MQ=255)

                            caGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAg                                                             >  2:1084033/1‑93 (MQ=255)

                            caGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAg                                                             >  2:2100883/1‑93 (MQ=255)

                             aGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAga                                                            >  2:4923224/1‑92 (MQ=255)

                             aGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGt                                                            >  1:1541157/1‑93 (MQ=255)

                             aGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGt                                                            >  2:1575208/1‑93 (MQ=255)

                              ggCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTa                                                           >  2:3693136/1‑93 (MQ=255)

                              ggCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTa                                                           >  2:1222308/1‑93 (MQ=255)

                              ggCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTa                                                           >  1:58565/1‑93 (MQ=255)

                                cccGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAAt                                                         <  2:1310450/93‑1 (MQ=255)

                                cccGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAAt                                                         >  2:5951359/1‑93 (MQ=255)

                                cccGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAAt                                                         >  1:6257351/1‑93 (MQ=255)

                                 ccGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAAtt                                                        <  2:63955/93‑1 (MQ=255)

                                   gTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGt                                                      >  2:765686/1‑93 (MQ=255)

                                    tCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGtt                                                     <  1:4255262/93‑1 (MQ=255)

                                    tCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGtt                                                     <  2:3384003/93‑1 (MQ=255)

                                    tCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGtt                                                     >  1:1873184/1‑93 (MQ=255)

                                     cACGCAGGCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGttt                                                    >  2:5765325/1‑93 (MQ=255)

                                      aCGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTc                                                   >  2:4607590/1‑93 (MQ=255)

                                      aCGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTc                                                   >  2:4975667/1‑93 (MQ=255)

                                       cGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCa                                                  >  2:4459420/1‑93 (MQ=255)

                                         cAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATc                                                <  2:1697632/93‑1 (MQ=255)

                                         cAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATc                                                <  1:330164/93‑1 (MQ=255)

                                          aGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCg                                               <  2:5193762/93‑1 (MQ=255)

                                           gTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGt                                              >  1:5069797/1‑93 (MQ=255)

                                               gCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGc                                          <  2:266799/93‑1 (MQ=255)

                                                cACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCt                                         <  1:6131823/93‑1 (MQ=255)

                                                cACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCt                                         >  2:2362212/1‑93 (MQ=255)

                                                  cTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTcc                                       <  1:2986532/93‑1 (MQ=255)

                                                    ggCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAt                                     >  1:793957/1‑93 (MQ=255)

                                                    ggCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAt                                     >  1:5948381/1‑93 (MQ=255)

                                                    ggCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAt                                     >  2:5583423/1‑93 (MQ=255)

                                                     gCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAtt                                    >  2:4986874/1‑93 (MQ=255)

                                                       gAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAtttt                                  >  1:125139/1‑93 (MQ=255)

                                                        aaTTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAttttt                                 <  2:2275353/93‑1 (MQ=255)

                                                        aaTTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAttttt                                 <  1:5152322/93‑1 (MQ=255)

                                                         aTTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTc                                >  2:4144812/1‑93 (MQ=255)

                                                         aTTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTc                                <  2:5660807/93‑1 (MQ=255)

                                                          ttCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCg                               <  2:3775376/93‑1 (MQ=255)

                                                           tCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGt                              <  1:5653220/93‑1 (MQ=255)

                                                                aGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTccc                         >  2:5096231/1‑93 (MQ=255)

                                                                aGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTccc                         >  1:4139858/1‑93 (MQ=255)

                                                                 gACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTcccc                        >  1:5514448/1‑93 (MQ=255)

                                                                 gACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTcccc                        >  2:2191477/1‑93 (MQ=255)

                                                                 gACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTcccc                        <  1:1629452/93‑1 (MQ=255)

                                                                 gACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTcccc                        <  2:272818/93‑1 (MQ=255)

                                                                 gACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTcccc                        <  1:1049365/93‑1 (MQ=255)

                                                                   cTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCcac                      <  2:4550446/93‑1 (MQ=255)

                                                                    tttgCGGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCGTCGTCAGCTCCATTTTTCGTTTCCCcaca                     <  1:4597679/91‑1 (MQ=255)

                                                                    tgtgCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCcaca                     <  2:3885373/93‑1 (MQ=255)

                                                                     gtgCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACAt                    >  2:2837402/1‑93 (MQ=255)

                                                                       gCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGt                  <  1:6047201/93‑1 (MQ=255)

                                                                       gCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGt                  <  2:3316855/93‑1 (MQ=255)

                                                                        ccGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGtt                 <  1:58269/93‑1 (MQ=255)

                                                                          gTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGc               <  1:238491/93‑1 (MQ=255)

                                                                          gTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGc               >  1:527565/1‑93 (MQ=255)

                                                                           tGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCa              <  2:6110708/93‑1 (MQ=255)

                                                                             gcgcTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAgg            <  2:4271364/93‑1 (MQ=255)

                                                                                cTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCa         >  2:129165/1‑93 (MQ=255)

                                                                                 tCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCAt        <  1:2775667/93‑1 (MQ=255)

                                                                                 tCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCAt        <  1:1344747/93‑1 (MQ=255)

                                                                                 tCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCAt        <  1:1277467/93‑1 (MQ=255)

                                                                                  cGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCAtt       >  1:3808248/1‑93 (MQ=255)

                                                                                   gCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTc      <  2:4827197/93‑1 (MQ=255)

                                                                                    cAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTcc     >  2:4649833/1‑93 (MQ=255)

                                                                                    cAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTcc     >  2:775077/1‑93 (MQ=255)

                                                                                     aGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCa    >  2:2516595/1‑93 (MQ=255)

                                                                                     aGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCa    >  1:3203784/1‑93 (MQ=255)

                                                                                     aGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCa    >  1:2707377/1‑93 (MQ=255)

                                                                                      ggATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCAt   <  2:2607331/93‑1 (MQ=255)

                                                                                      ggATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCAt   >  1:4695227/1‑93 (MQ=255)

                                                                                       gATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATc  >  1:5201032/1‑93 (MQ=255)

TGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATC  >  NC_000913/4413738‑4413917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGG  >  NC_000913/4413736‑4413921

ATTGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCTCTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGA                                                                                              <  SRR4302534.6141724/94‑1 (MQ=60)

ATTGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGA                                                                                              >  SRR4302534.59987/1‑94 (MQ=60)

ATTGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGA                                                                                              <  SRR4302534.335025/94‑1 (MQ=60)

 TTGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAG                                                                                             >  SRR4302534.3675670/1‑94 (MQ=60)

  TGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGT                                                                                            <  SRR4302534.2343357/94‑1 (MQ=60)

  TGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGT                                                                                            <  SRR4302534.5321026/94‑1 (MQ=60)

   GCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTC                                                                                           <  SRR4302534.2812521/94‑1 (MQ=60)

   GCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTC                                                                                           <  SRR4302534.2008310/94‑1 (MQ=60)

     TAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCAC                                                                                         >  SRR4302534.6538726/1‑94 (MQ=60)

     TAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCAC                                                                                         >  SRR4302534.3658067/1‑94 (MQ=60)

       ACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTA                                                                                       >  SRR4302534.2127515/1‑94 (MQ=60)

        CTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAA                                                                                      >  SRR4302534.5534247/1‑94 (MQ=60)

        CTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAA                                                                                      >  SRR4302534.199169/1‑94 (MQ=60)

        CTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAA                                                                                      <  SRR4302534.3420136/94‑1 (MQ=60)

        CTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAA                                                                                      >  SRR4302534.6329540/1‑94 (MQ=60)

         TGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAAT                                                                                     <  SRR4302534.1461132/94‑1 (MQ=60)

         TGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAAT                                                                                     >  SRR4302534.5872843/1‑94 (MQ=60)

           AGATCTGACCTATTTCATTCAGGACCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGCCGCTCGCAGGATGAGTCAATAATTA                                                                                   >  SRR4302534.1905297/1‑94 (MQ=60)

             ATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCA                                                                                 <  SRR4302534.2971087/94‑1 (MQ=60)

             ATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCA                                                                                 <  SRR4302534.4137049/94‑1 (MQ=60)

                TGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCG                                                                              >  SRR4302534.4764754/1‑94 (MQ=60)

                GGACCTATTGCATTCAGTCCGGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGGGGCGCTCACAGGATGAGTCACTAAGTGCAGCT                                                                              <  SRR4302534.2685369/94‑1 (MQ=60)

                 GACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGA                                                                             >  SRR4302534.5506436/1‑94 (MQ=60)

                 GACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGA                                                                             >  SRR4302534.3286958/1‑94 (MQ=60)

                  ACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAG                                                                            >  SRR4302534.6322676/1‑94 (MQ=60)

                  ACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAG                                                                            <  SRR4302534.4756837/94‑1 (MQ=60)

                   CCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGG                                                                           >  SRR4302534.5535135/1‑94 (MQ=60)

                   CCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGG                                                                           <  SRR4302534.3659000/94‑1 (MQ=60)

                   CCTATTGCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGG                                                                           <  SRR4302534.509168/94‑1 (MQ=60)

                    CTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGG                                                                          <  SRR4302534.6209789/94‑1 (MQ=60)

                    CTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGG                                                                          >  SRR4302534.1365063/1‑94 (MQ=60)

                    CTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGG                                                                          <  SRR4302534.4772219/94‑1 (MQ=60)

                     TATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGT                                                                         <  SRR4302534.453920/94‑1 (MQ=60)

                      ATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTG                                                                        <  SRR4302534.1581753/94‑1 (MQ=60)

                       TTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGA                                                                       <  SRR4302534.5012118/94‑1 (MQ=60)

                        TTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAG                                                                      <  SRR4302534.2637/94‑1 (MQ=60)

                        TTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAG                                                                      <  SRR4302534.6146808/94‑1 (MQ=60)

                        TTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAG                                                                      <  SRR4302534.6151052/94‑1 (MQ=60)

                         TCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCAGTAATTGCAGCGAGGGTGAGA                                                                     >  SRR4302534.3050196/1‑94 (MQ=60)

                         TCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGG                                                                     <  SRR4302534.3857065/94‑1 (MQ=60)

                         TCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGG                                                                     >  SRR4302534.4702999/1‑94 (MQ=60)

                          CATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGC                                                                    >  SRR4302534.1851874/1‑94 (MQ=60)

                           ATTCAGGCCCGTCTCGCACTCAGCACTGGCGAATTCTCGAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGGGGCA                                                                   <  SRR4302534.6330358/94‑1 (MQ=60)

                           ATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCA                                                                   >  SRR4302534.2955345/1‑94 (MQ=60)

                           ATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCA                                                                   >  SRR4302534.3385414/1‑94 (MQ=60)

                            TTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAA                                                                  <  SRR4302534.6014798/94‑1 (MQ=60)

                            TTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAA                                                                  >  SRR4302534.3410083/1‑94 (MQ=60)

                            TTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAA                                                                  >  SRR4302534.3616845/1‑94 (MQ=60)

                            TTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGGGAGGCAA                                                                  >  SRR4302534.1882875/1‑94 (MQ=60)

                             TCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGTCTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAG                                                                 <  SRR4302534.956583/94‑1 (MQ=60)

                             TCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAG                                                                 >  SRR4302534.4920151/1‑94 (MQ=60)

                             TCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAG                                                                 <  SRR4302534.2730254/94‑1 (MQ=60)

                              CAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGT                                                                >  SRR4302534.2634670/1‑94 (MQ=60)

                              CAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGT                                                                >  SRR4302534.1581554/1‑94 (MQ=60)

                              CAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGT                                                                >  SRR4302534.4336029/1‑94 (MQ=60)

                               AGGCCCGTCGCGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTA                                                               >  SRR4302534.4780577/1‑94 (MQ=60)

                               AGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTA                                                               >  SRR4302534.60145/1‑94 (MQ=60)

                                GGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAA                                                              >  SRR4302534.5676628/1‑94 (MQ=60)

                                GGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAA                                                              >  SRR4302534.4034747/1‑94 (MQ=60)

                                 GCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAAT                                                             >  SRR4302534.6426920/1‑94 (MQ=60)

                                  CCCGTCATGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATT                                                            >  SRR4302534.841698/1‑94 (MQ=60)

                                     GTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTT                                                         <  SRR4302534.5181748/94‑1 (MQ=60)

                                     GTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTT                                                         >  SRR4302534.1921935/1‑94 (MQ=60)

                                      TCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTT                                                        <  SRR4302534.4370108/94‑1 (MQ=60)

                                      TCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTT                                                        <  SRR4302534.2622419/94‑1 (MQ=60)

                                      TCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTT                                                        <  SRR4302534.6221141/94‑1 (MQ=60)

                                       CACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTC                                                       >  SRR4302534.6389700/1‑94 (MQ=60)

                                         CGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCAT                                                     >  SRR4302534.5337150/1‑94 (MQ=60)

                                          GCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATC                                                    <  SRR4302534.2223221/94‑1 (MQ=60)

                                          GCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCAATAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATC                                                    >  SRR4302534.3224005/1‑94 (MQ=60)

                                           CAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCG                                                   <  SRR4302534.338645/94‑1 (MQ=60)

                                            AGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGT                                                  <  SRR4302534.4729536/94‑1 (MQ=60)

                                            AGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGT                                                  >  SRR4302534.5206671/1‑94 (MQ=60)

                                            AGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGT                                                  >  SRR4302534.5206670/1‑94 (MQ=60)

                                             GTCGGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTC                                                 <  SRR4302534.4112765/94‑1 (MQ=60)

                                             GTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTC                                                 <  SRR4302534.6027386/94‑1 (MQ=60)

                                              TCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCA                                                >  SRR4302534.1752612/1‑94 (MQ=60)

                                               CAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAG                                               >  SRR4302534.1970251/1‑94 (MQ=60)

                                                 GCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCT                                             <  SRR4302534.941127/94‑1 (MQ=60)

                                                  CACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTC                                            >  SRR4302534.1308578/1‑94 (MQ=60)

                                                  CACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTC                                            <  SRR4302534.6298623/94‑1 (MQ=60)

                                                    CTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCA                                          <  SRR4302534.3064639/94‑1 (MQ=60)

                                                     TGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAT                                         >  SRR4302534.813867/1‑94 (MQ=60)

                                                     TGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAT                                         <  SRR4302534.6208644/94‑1 (MQ=60)

                                                     TGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCAT                                         >  SRR4302534.6109888/1‑94 (MQ=60)

                                                        CGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTT                                      >  SRR4302534.128445/1‑94 (MQ=60)

                                                        CGAATTCTGCAGACTGGGCCGTGGCGCTCGCAGGGTGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTT                                      >  SRR4302534.3807473/1‑94 (MQ=60)

                                                         GAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTT                                     >  SRR4302534.1647030/1‑94 (MQ=60)

                                                          AATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTC                                    <  SRR4302534.5291303/94‑1 (MQ=60)

                                                          AATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTC                                    <  SRR4302534.2964873/94‑1 (MQ=60)

                                                          AATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTC                                    <  SRR4302534.1540203/94‑1 (MQ=60)

                                                             TCTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTT                                 <  SRR4302534.5806234/94‑1 (MQ=60)

                                                              CTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTT                                <  SRR4302534.3341673/94‑1 (MQ=60)

                                                              CTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTT                                <  SRR4302534.1793751/94‑1 (MQ=60)

                                                              CTGCAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTT                                >  SRR4302534.3423535/1‑94 (MQ=60)

                                                                 CAGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCC                             >  SRR4302534.4251577/1‑94 (MQ=60)

                                                                  AGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCC                            >  SRR4302534.3589010/1‑94 (MQ=60)

                                                                  AGACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCC                            >  SRR4302534.5663214/1‑94 (MQ=60)

                                                                  AGACTGTGCCGGGGAGCTCGCCGGATGAGGCACTAGTTGCAGCCTGGGTGAGGCACGTAATAGTTTCATCGTCAGCTCCATTTTTCGTTTCCTC                            >  SRR4302534.2883600/1‑94 (MQ=38)

                                                                   GACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCA                           <  SRR4302534.1671948/94‑1 (MQ=60)

                                                                   GACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCA                           <  SRR4302534.1076527/94‑1 (MQ=60)

                                                                    ACTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCAC                          >  SRR4302534.2734813/1‑94 (MQ=60)

                                                                     CTGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACA                         >  SRR4302534.2766019/1‑94 (MQ=60)

                                                                      TTTGCGGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCGTCGTCAGCTCCATTTTTCGTTTCCCCACAT                        <  SRR4302534.4722462/94‑1 (MQ=60)

                                                                      TGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACAT                        >  SRR4302534.5346037/1‑94 (MQ=60)

                                                                      TGTGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACAT                        >  SRR4302534.5863693/1‑94 (MQ=60)

                                                                        TGCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGT                      >  SRR4302534.3873044/1‑94 (MQ=60)

                                                                         GCCGTGGCGCTCGCAGGATGAGTCACTTAGTGCAGCCAGGGTGAGGCAAGTAATTGTTTAATCGTCAGCTCCATTTTTCGTTTCCCCCCATGTT                     <  SRR4302534.3223010/94‑1 (MQ=60)

                                                                         GCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTT                     <  SRR4302534.6211580/94‑1 (MQ=60)

                                                                         GCCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTT                     <  SRR4302534.5374848/94‑1 (MQ=60)

                                                                          CCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTG                    <  SRR4302534.1358500/94‑1 (MQ=60)

                                                                          CCGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTG                    <  SRR4302534.59841/94‑1 (MQ=60)

                                                                           CGTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGC                   >  SRR4302534.540657/1‑94 (MQ=60)

                                                                            GTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCA                  >  SRR4302534.1016025/1‑94 (MQ=60)

                                                                            GTGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCA                  <  SRR4302534.244734/94‑1 (MQ=60)

                                                                             TGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAG                 >  SRR4302534.1136410/1‑94 (MQ=60)

                                                                             TGGCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTACCCACATGTTTCAG                 >  SRR4302534.6213854/1‑94 (MQ=60)

                                                                               GCGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGG               >  SRR4302534.5448519/1‑94 (MQ=60)

                                                                                CGCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGC              >  SRR4302534.720963/1‑94 (MQ=60)

                                                                                 GCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCA             >  SRR4302534.5762303/1‑94 (MQ=60)

                                                                                 GCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCA             <  SRR4302534.5615468/94‑1 (MQ=60)

                                                                                 GCTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCA             >  SRR4302534.6128322/1‑94 (MQ=60)

                                                                                  CTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCAT            <  SRR4302534.2647464/94‑1 (MQ=60)

                                                                                  CTCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCAT            >  SRR4302534.1300209/1‑94 (MQ=60)

                                                                                   TCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATT           <  SRR4302534.1311088/94‑1 (MQ=60)

                                                                                   TCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATT           >  SRR4302534.2809885/1‑94 (MQ=60)

                                                                                   TCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATT           <  SRR4302534.1380202/94‑1 (MQ=60)

                                                                                   TCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATT           >  SRR4302534.4793981/1‑94 (MQ=60)

                                                                                   TCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATT           <  SRR4302534.2848694/94‑1 (MQ=60)

                                                                                   TCGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATT           >  SRR4302534.3910497/1‑94 (MQ=60)

                                                                                    CGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTC          <  SRR4302534.4151791/94‑1 (MQ=60)

                                                                                    CGCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTC          >  SRR4302534.2535009/1‑94 (MQ=60)

                                                                                     GCAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCC         >  SRR4302534.2085988/1‑94 (MQ=60)

                                                                                      CAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCA        >  SRR4302534.2778865/1‑94 (MQ=60)

                                                                                      CAGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCA        >  SRR4302534.3288738/1‑94 (MQ=60)

                                                                                       AGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCAT       >  SRR4302534.4822669/1‑94 (MQ=60)

                                                                                       AGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCAT       <  SRR4302534.4990843/94‑1 (MQ=60)

                                                                                       AGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCAT       >  SRR4302534.599360/1‑94 (MQ=60)

                                                                                       AGGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCAT       >  SRR4302534.4295322/1‑94 (MQ=60)

                                                                                        GGATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATC      >  SRR4302534.5341344/1‑94 (MQ=60)

                                                                                         GATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCG     <  SRR4302534.636966/94‑1 (MQ=60)

                                                                                         GATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCATCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCG     >  SRR4302534.4349188/1‑94 (MQ=60)

                                                                                          ATGAGTCACTAATTGTAGCGAGGGTGAGCCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGC    <  SRR4302534.3481271/94‑1 (MQ=60)

                                                                                          ATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGC    <  SRR4302534.448663/94‑1 (MQ=60)

                                                                                          ATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGC    >  SRR4302534.5873694/1‑94 (MQ=60)

                                                                                          ATGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGC    >  SRR4302534.3122176/1‑94 (MQ=60)

                                                                                           TGAGTCACTAGTTGCGGCGAGGGTGAGGCAAGTAATTGTTTCATCCTACGCTCCATTTTCCGTTGCCGCACATGTTGCAGGGCATTCCATCGCG   <  SRR4302534.6557096/94‑1 (MQ=60)

                                                                                           TGAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCG   >  SRR4302534.2227829/1‑94 (MQ=60)

                                                                                            GAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTTCCCACATGTTGCAGGGCATTCCATCGCGG  >  SRR4302534.3736644/1‑94 (MQ=60)

ATTGCTAACTGAGATCTGACCTATTTCATTCAGGCCCGTCACGCAGTCAGCACTGGCGAATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGG  >  NC_000913/4413736‑4413921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`