Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,502,680 C→T A352V (GCA→GTA)  b4279 → putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,502,6800CT99.4% 591.8 / NA 163A352V (GCA→GTA) b4279putative transport protein
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (93/68);  total (95/68)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 163 total aligned reads displayed.

GTATTGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCAT  >  NC_000913/4502590‑4502769
                                                                                          |                                                                                         
   ttGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTg                                                                                      <  2:3935868/93‑1 (MQ=255)
     gCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTgga                                                                                    >  2:5865552/1‑93 (MQ=255)
      cAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTggag                                                                                   >  1:6052171/1‑93 (MQ=255)
        gggTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTggagga                                                                                 >  1:5782032/1‑93 (MQ=255)
         ggttggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGaa                                                                                >  1:4392227/1‑93 (MQ=255)
         ggttggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGaa                                                                                <  2:6076873/93‑1 (MQ=255)
          gttggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAAt                                                                               >  2:1648307/1‑93 (MQ=255)
          gttggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAAt                                                                               <  2:6017650/93‑1 (MQ=255)
          gttggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAAt                                                                               <  2:3001464/93‑1 (MQ=255)
            tggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATgg                                                                             >  1:1533270/1‑93 (MQ=255)
             ggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGc                                                                            <  2:1707638/93‑1 (MQ=255)
             ggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGc                                                                            >  2:5307537/1‑93 (MQ=255)
             ggttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGc                                                                            >  2:3326137/1‑93 (MQ=255)
              gttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGcc                                                                           <  2:4015444/93‑1 (MQ=255)
              gttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGcc                                                                           <  2:4103906/93‑1 (MQ=255)
              gttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGcc                                                                           >  2:5270820/1‑93 (MQ=255)
              gttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGcc                                                                           <  2:709573/93‑1 (MQ=255)
               ttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTATGGGTAACTGGAGGAATGGCCg                                                                          >  1:3390050/1‑93 (MQ=255)
               ttCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCg                                                                          >  2:6167390/1‑93 (MQ=255)
                  cAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCAc                                                                       >  2:2063167/1‑93 (MQ=255)
                  cAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCAc                                                                       >  2:951056/1‑93 (MQ=255)
                  cAAAATTGATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCAc                                                                       >  1:6359980/1‑93 (MQ=255)
                   aaaaTTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCAcc                                                                      <  1:3190790/93‑1 (MQ=255)
                   aaaaTTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCAcc                                                                      <  2:6331361/93‑1 (MQ=255)
                    aaaTTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCt                                                                     >  2:896559/1‑93 (MQ=255)
                     aaTTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTg                                                                    >  2:2931599/1‑93 (MQ=255)
                           tatatGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAg                                                              <  1:1254575/93‑1 (MQ=255)
                           tatatGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAg                                                              >  1:3774485/1‑93 (MQ=255)
                            atatGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGc                                                             <  2:1021484/93‑1 (MQ=255)
                            atatGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGc                                                             <  1:6160458/93‑1 (MQ=255)
                            atatGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGc                                                             >  1:5284490/1‑93 (MQ=255)
                             tatGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCt                                                            <  2:2632629/93‑1 (MQ=255)
                             tatGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCt                                                            >  1:5193252/1‑93 (MQ=255)
                               tGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCtac                                                          <  1:515713/93‑1 (MQ=255)
                                 aTTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCtacat                                                        >  2:1906859/1‑93 (MQ=255)
                                  ttACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCtacata                                                       >  1:828281/1‑93 (MQ=255)
                                   tACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCtacatac                                                      >  1:557968/1‑93 (MQ=255)
                                   tACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCtacatac                                                      <  2:5402815/93‑1 (MQ=255)
                                   tACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCtacatac                                                      >  1:4637533/1‑93 (MQ=255)
                                    aCTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCtacataca                                                     >  2:3641312/1‑93 (MQ=255)
                                     cTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTacatacat                                                    <  2:4994891/93‑1 (MQ=255)
                                      tttCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACAtt                                                   <  1:4568405/93‑1 (MQ=255)
                                      tttCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACAtt                                                   >  2:2648285/1‑93 (MQ=255)
                                      tttCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACAtt                                                   >  2:2755440/1‑93 (MQ=255)
                                       ttCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACAttt                                                  >  2:3592526/1‑93 (MQ=255)
                                        tCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTc                                                 >  1:5167503/1‑93 (MQ=255)
                                          caacaaAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAg                                               >  2:4003241/1‑93 (MQ=255)
                                          caacaaAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAg                                               >  1:364987/1‑93 (MQ=255)
                                          caacaaAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAg                                               >  2:5953073/1‑93 (MQ=255)
                                           aacaaAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAgg                                              >  1:3552739/1‑93 (MQ=255)
                                           aacaaAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAgg                                              <  1:3462157/93‑1 (MQ=255)
                                             caaAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGat                                            >  2:253861/1‑93 (MQ=255)
                                              aaaaTTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGCAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGata                                           <  2:3447079/93‑1 (MQ=255)
                                               aaaTTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGatat                                          <  2:173957/93‑1 (MQ=255)
                                               aaaTTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGatat                                          <  1:2969337/93‑1 (MQ=255)
                                               aaaTTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGatat                                          <  1:5672266/93‑1 (MQ=255)
                                                aaTTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGAtatt                                         >  1:3313127/1‑93 (MQ=255)
                                                aaTTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGAtatt                                         <  1:1021658/93‑1 (MQ=255)
                                                  ttAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGAtattat                                       <  2:4208885/93‑1 (MQ=255)
                                                   tAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATg                                      <  1:2645996/93‑1 (MQ=255)
                                                    aaGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATgg                                     >  2:4521168/1‑93 (MQ=255)
                                                      gagGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCt                                   <  1:1330502/93‑1 (MQ=255)
                                                      gagGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCt                                   <  1:418855/93‑1 (MQ=255)
                                                       agGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCtt                                  >  2:4083001/1‑93 (MQ=255)
                                                        ggATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTa                                 >  1:2207415/1‑93 (MQ=255)
                                                         gATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAg                                >  1:1334623/1‑93 (MQ=255)
                                                          aTTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAgg                               <  2:1389586/93‑1 (MQ=255)
                                                           ttAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGgt                              >  1:5075202/1‑93 (MQ=255)
                                                            tAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGgtg                             <  1:4104336/93‑1 (MQ=255)
                                                             aGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGgtgt                            >  1:4603291/1‑93 (MQ=255)
                                                              gggACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGtt                           >  1:2552429/1‑93 (MQ=255)
                                                              gggACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGtt                           >  2:6135249/1‑93 (MQ=255)
                                                              gggACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGtt                           >  1:5198909/1‑93 (MQ=255)
                                                               ggACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGttt                          >  1:648604/1‑93 (MQ=255)
                                                               ggACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGttt                          >  1:5912087/1‑93 (MQ=255)
                                                                  ccGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCat                       >  1:283791/1‑93 (MQ=255)
                                                                   cGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCatt                      >  2:36543/1‑93 (MQ=255)
                                                                   cGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCatt                      <  2:3411678/93‑1 (MQ=255)
                                                                      tCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCattatt                   <  1:1579585/93‑1 (MQ=255)
                                                                      tCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCattatt                   >  2:1598403/1‑93 (MQ=255)
                                                                      tCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCattatt                   >  1:6007689/1‑93 (MQ=255)
                                                                        ttatttatAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCa                 >  1:3750798/1‑93 (MQ=255)
                                                                         tatttatAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCAt                <  2:6118618/93‑1 (MQ=255)
                                                                         tatttatAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCAt                >  1:2250424/1‑93 (MQ=255)
                                                                          atttatAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCAtt               >  2:4465570/1‑93 (MQ=255)
                                                                           tttatAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTg              >  1:2418505/1‑93 (MQ=255)
                                                                            ttatAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGt             <  2:2059205/93‑1 (MQ=255)
                                                                            ttatAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGt             <  1:2896353/93‑1 (MQ=255)
                                                                              ataACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTa           >  1:4445438/1‑93 (MQ=255)
                                                                              ataACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTa           >  2:1127147/1‑93 (MQ=255)
                                                                               taACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTAc          >  2:4582941/1‑93 (MQ=255)
                                                                                aaCTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACg         >  1:2938289/1‑93 (MQ=255)
                                                                                 aCTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACgg        <  1:1353980/93‑1 (MQ=255)
                                                                                    tAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTg     <  1:3988326/93‑1 (MQ=255)
                                                                                    tAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTg     >  2:2716318/1‑93 (MQ=255)
                                                                                     aGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGc    <  2:4839503/93‑1 (MQ=255)
                                                                                      ggggTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCa   <  1:1732664/93‑1 (MQ=255)
                                                                                      ggggTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCa   >  1:5647724/1‑93 (MQ=255)
                                                                                       gggTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCAt  >  1:2382171/1‑93 (MQ=255)
                                                                                       gggTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCAt  <  2:3028835/93‑1 (MQ=255)
                                                                                          |                                                                                         
GTATTGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCAT  >  NC_000913/4502590‑4502769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGGTATTGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTC  >  NC_000913/4502588‑4502773
                                                                                            |                                                                                             
AGGTATTGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTA                                                                                              <  SRR4302534.4885383/94‑1 (MQ=60)
 GGTATTGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAA                                                                                             >  SRR4302534.2670547/1‑94 (MQ=60)
       GCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAG                                                                                       >  SRR4302534.6216749/1‑94 (MQ=60)
         AGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGA                                                                                     >  SRR4302534.5938875/1‑94 (MQ=60)
         AGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGA                                                                                     <  SRR4302534.1929682/94‑1 (MQ=60)
          GGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAA                                                                                    >  SRR4302534.4510681/1‑94 (MQ=60)
          GGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAA                                                                                    >  SRR4302534.6285055/1‑94 (MQ=60)
          GGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAA                                                                                    >  SRR4302534.5308553/1‑94 (MQ=60)
           GGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAAT                                                                                   <  SRR4302534.77813/94‑1 (MQ=60)
             TTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGG                                                                                 <  SRR4302534.2438875/94‑1 (MQ=60)
             TTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGG                                                                                 >  SRR4302534.1573485/1‑94 (MQ=60)
               GGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCC                                                                               >  SRR4302534.3537140/1‑94 (MQ=60)
                GTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTATGGGTAACTGGAGGAATGGCCG                                                                              >  SRR4302534.3480979/1‑94 (MQ=60)
                  TCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCA                                                                            <  SRR4302534.3417135/94‑1 (MQ=60)
                   CCAAAATTGATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCAC                                                                           >  SRR4302534.6531738/1‑94 (MQ=60)
                     AAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCT                                                                         <  SRR4302534.3275273/94‑1 (MQ=60)
                       AATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGT                                                                       <  SRR4302534.5883619/94‑1 (MQ=60)
                       AATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGT                                                                       <  SRR4302534.5413249/94‑1 (MQ=60)
                            ATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAG                                                                  >  SRR4302534.3875825/1‑94 (MQ=60)
                             TATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGC                                                                 >  SRR4302534.5427149/1‑94 (MQ=60)
                             TATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGC                                                                 <  SRR4302534.1287642/94‑1 (MQ=60)
                              ATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCT                                                                >  SRR4302534.5333268/1‑94 (MQ=60)
                              ATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCT                                                                <  SRR4302534.6328017/94‑1 (MQ=60)
                                ATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGGCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTAC                                                              >  SRR4302534.5662033/1‑94 (MQ=60)
                                 TGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACA                                                             <  SRR4302534.528540/94‑1 (MQ=60)
                                 TGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACA                                                             >  SRR4302534.5817043/1‑94 (MQ=60)
                                   ATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATA                                                           <  SRR4302534.4096839/94‑1 (MQ=60)
                                   ATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATA                                                           >  SRR4302534.849125/1‑94 (MQ=60)
                                   ATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATA                                                           <  SRR4302534.1467812/94‑1 (MQ=60)
                                    TTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATAC                                                          >  SRR4302534.4763361/1‑94 (MQ=60)
                                    TTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATAC                                                          >  SRR4302534.571726/1‑94 (MQ=60)
                                    TTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATAC                                                          <  SRR4302534.4621946/94‑1 (MQ=60)
                                     TACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA                                                         <  SRR4302534.3670246/94‑1 (MQ=60)
                                       CTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATT                                                       <  SRR4302534.296826/94‑1 (MQ=60)
                                        TTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTT                                                      <  SRR4302534.4692260/94‑1 (MQ=60)
                                         TTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTC                                                     >  SRR4302534.5306789/1‑94 (MQ=60)
                                          TCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCA                                                    <  SRR4302534.3912673/94‑1 (MQ=60)
                                           CCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAG                                                   >  SRR4302534.374303/1‑94 (MQ=60)
                                            CAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGG                                                  >  SRR4302534.3648283/1‑94 (MQ=60)
                                             AACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGA                                                 <  SRR4302534.3555232/94‑1 (MQ=60)
                                                 AAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATT                                             <  SRR4302534.3047092/94‑1 (MQ=60)
                                                 AAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATT                                             <  SRR4302534.3818639/94‑1 (MQ=60)
                                                 AAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATT                                             <  SRR4302534.5825847/94‑1 (MQ=60)
                                                 AAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATT                                             >  SRR4302534.3401637/1‑94 (MQ=60)
                                                  AATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTA                                            >  SRR4302534.2560287/1‑94 (MQ=60)
                                                  AATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTA                                            <  SRR4302534.1047969/94‑1 (MQ=60)
                                                   ATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTAT                                           >  SRR4302534.1385423/1‑94 (MQ=60)
                                                     TAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGG                                         >  SRR4302534.300257/1‑94 (MQ=60)
                                                     TAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGG                                         <  SRR4302534.2715965/94‑1 (MQ=60)
                                                        GAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTT                                      <  SRR4302534.429567/94‑1 (MQ=60)
                                                        GAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTT                                      <  SRR4302534.1365575/94‑1 (MQ=60)
                                                         AGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTA                                     <  SRR4302534.1641779/94‑1 (MQ=60)
                                                         AGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTA                                     >  SRR4302534.2265850/1‑94 (MQ=60)
                                                         AGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTA                                     >  SRR4302534.6108731/1‑94 (MQ=60)
                                                         AGGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTA                                     >  SRR4302534.519642/1‑94 (MQ=60)
                                                          GGATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAG                                    >  SRR4302534.1369797/1‑94 (MQ=60)
                                                            ATTAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGT                                  >  SRR4302534.5212200/1‑94 (MQ=60)
                                                              TAGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGT                                <  SRR4302534.4214715/94‑1 (MQ=60)
                                                              TAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGT                                >  SRR4302534.4728216/1‑94 (MQ=60)
                                                               AGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTT                               >  SRR4302534.2620095/1‑94 (MQ=60)
                                                               AGGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTT                               >  SRR4302534.5339147/1‑94 (MQ=60)
                                                                GGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTT                              >  SRR4302534.664331/1‑94 (MQ=60)
                                                                GGGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTT                              >  SRR4302534.6072634/1‑94 (MQ=60)
                                                                 GGACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATATATTTCAGGATATTATGGCTTAGGTGTTTC                             <  SRR4302534.3208255/94‑1 (MQ=60)
                                                                   ACCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCAT                           >  SRR4302534.291124/1‑94 (MQ=60)
                                                                    CCGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATT                          >  SRR4302534.5241051/1‑94 (MQ=60)
                                                                     CGGTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTA                         >  SRR4302534.6527553/1‑94 (MQ=60)
                                                                       GTCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATT                       >  SRR4302534.6170912/1‑94 (MQ=60)
                                                                        TCTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTC                      <  SRR4302534.1620906/94‑1 (MQ=60)
                                                                         CTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCA                     >  SRR4302534.3851534/1‑94 (MQ=60)
                                                                         CTTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCA                     >  SRR4302534.468520/1‑94 (MQ=60)
                                                                          TTATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCAT                    >  SRR4302534.2310077/1‑94 (MQ=60)
                                                                            ATTTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTG                  >  SRR4302534.2482824/1‑94 (MQ=60)
                                                                              TTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTT                <  SRR4302534.2972378/94‑1 (MQ=60)
                                                                              TTATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTT                <  SRR4302534.884075/94‑1 (MQ=60)
                                                                               TATAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTA               >  SRR4302534.4565547/1‑94 (MQ=60)
                                                                                 TAACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACG             >  SRR4302534.3015406/1‑94 (MQ=60)
                                                                                  AACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGG            >  SRR4302534.4310687/1‑94 (MQ=60)
                                                                                   ACTTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGT           <  SRR4302534.1389669/94‑1 (MQ=60)
                                                                                     TTAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTG         <  SRR4302534.1317188/94‑1 (MQ=60)
                                                                                      TAGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGC        <  SRR4302534.4095032/94‑1 (MQ=60)
                                                                                       AGGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCA       >  SRR4302534.5800609/1‑94 (MQ=60)
                                                                                        GGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCAT      >  SRR4302534.2445468/1‑94 (MQ=60)
                                                                                        GGGGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCAT      <  SRR4302534.1777667/94‑1 (MQ=60)
                                                                                          GGTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTC    <  SRR4302534.4819158/94‑1 (MQ=60)
                                                                                           GTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCT   >  SRR4302534.5350280/1‑94 (MQ=60)
                                                                                           GTAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCT   >  SRR4302534.503335/1‑94 (MQ=60)
                                                                                            TAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTC  >  SRR4302534.5148351/1‑94 (MQ=60)
                                                                                            |                                                                                             
AGGTATTGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTC  >  NC_000913/4502588‑4502773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: