Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,601,332	A→G	Q96R (CAG→CGG)	yjjQ →	putative regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,601,332	0	A	G	99.6%	850.1 / ‑4.9	248	Q96R (CAG→CGG)	yjjQ	putative regulator
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (132/115); total (133/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01

Only 100 of 254 total aligned reads displayed.

CACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCAGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCA  >  NC_000913/4601242‑4601421

cACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCggg                                                                                         >  1:1827330/1‑93 (MQ=255)

 aCGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGc                                                                                        >  1:2169541/1‑93 (MQ=255)

  cGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCa                                                                                       >  1:4544422/1‑93 (MQ=255)

   gTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAg                                                                                      <  2:728467/93‑1 (MQ=255)

   gTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAg                                                                                      >  2:3465763/1‑93 (MQ=255)

    ttCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGt                                                                                     >  1:2554291/1‑93 (MQ=255)

     tCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTa                                                                                    >  2:2948826/1‑93 (MQ=255)

     tCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTa                                                                                    <  2:5316273/93‑1 (MQ=255)

      cTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAg                                                                                   >  2:3238393/1‑93 (MQ=255)

       tGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGa                                                                                  >  2:3414254/1‑93 (MQ=255)

       tGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGa                                                                                  >  2:3633841/1‑93 (MQ=255)

        gTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGaa                                                                                 <  2:3097479/93‑1 (MQ=255)

          ttGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACt                                                                               <  1:1093660/93‑1 (MQ=255)

          ttGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACt                                                                               >  2:633037/1‑93 (MQ=255)

           tgtgAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTg                                                                              >  2:2225614/1‑93 (MQ=255)

           tgtgAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTg                                                                              >  1:990220/1‑93 (MQ=255)

            gtgAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGc                                                                             <  2:3781416/93‑1 (MQ=255)

             tgAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCt                                                                            >  2:1174424/1‑93 (MQ=255)

              gAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTc                                                                           >  1:2854343/1‑93 (MQ=255)

              gAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTc                                                                           >  2:5242506/1‑93 (MQ=255)

              gAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTc                                                                           >  2:1687865/1‑93 (MQ=255)

                 cATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCAtg                                                                        <  1:3864311/93‑1 (MQ=255)

                 cATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTATCATGGTGCCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCAtg                                                                        <  2:4457711/93‑1 (MQ=255)

                  attattattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCAtgt                                                                       <  2:556759/93‑1 (MQ=255)

                    tattattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGc                                                                     >  2:5810376/1‑93 (MQ=255)

                    tattattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGc                                                                     >  2:803051/1‑93 (MQ=255)

                      ttattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGccc                                                                   <  1:3298064/93‑1 (MQ=255)

                      ttattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGccc                                                                   >  2:2786056/1‑93 (MQ=255)

                      ttattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGccc                                                                   <  2:5750751/93‑1 (MQ=255)

                       tattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCt                                                                  <  1:2255761/93‑1 (MQ=255)

                       tattCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCt                                                                  >  1:5206390/1‑93 (MQ=255)

                         ttCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTAc                                                                <  2:4382047/93‑1 (MQ=255)

                         ttCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTAc                                                                <  2:5614904/93‑1 (MQ=255)

                          tCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACg                                                               >  1:1375325/1‑93 (MQ=255)

                          tCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACg                                                               >  1:889671/1‑93 (MQ=255)

                          tCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACg                                                               >  1:1993298/1‑93 (MQ=255)

                          tCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACg                                                               >  1:5434649/1‑93 (MQ=255)

                           cTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACgg                                                              <  1:3558584/93‑1 (MQ=255)

                           cTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACgg                                                              >  2:4402301/1‑93 (MQ=255)

                           cTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACgg                                                              <  2:5477277/93‑1 (MQ=255)

                            tttAATCTCACAATGTCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGc                                                             >  1:3920144/1‑93 (MQ=255)

                               aaTCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTGACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGAc                                                          >  1:478911/1‑93 (MQ=255)

                               aaTCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGAc                                                          <  2:6168591/93‑1 (MQ=255)

                               aaTCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGAc                                                          >  1:5009521/1‑93 (MQ=255)

                               aaTCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGAc                                                          >  1:4519067/1‑93 (MQ=255)

                                 tctcGCAATATCGGCAAATTCACTGGGTTTTCAGGTTGCCACGCTCCTGGTAGTCCCGGTCAGTAGAACTGCTCATGTGCCCTACGGCGACGt                                                        <  2:3912166/93‑1 (MQ=255)

                                 tctcACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGt                                                        >  1:2035748/1‑93 (MQ=255)

                                  ctcACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGtt                                                       >  1:6479364/1‑93 (MQ=255)

                                    cacaATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTAt                                                     <  1:3379005/93‑1 (MQ=255)

                                    cacaATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTAt                                                     <  1:2877511/93‑1 (MQ=255)

                                    cacaATATCGGGAAATTCACTGGGGTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTAt                                                     >  2:3178707/1‑93 (MQ=255)

                                     acaATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTAtt                                                    >  2:6236150/1‑93 (MQ=255)

                                       aaTATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGt                                                  >  2:4907211/1‑93 (MQ=255)

                                       aaTATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGt                                                  >  1:4869781/1‑93 (MQ=255)

                                        atatCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTc                                                 >  1:5485169/1‑93 (MQ=255)

                                        atatCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTc                                                 <  2:2659836/93‑1 (MQ=255)

                                        atatCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTc                                                 >  1:3675045/1‑93 (MQ=255)

                                         tatCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCt                                                >  2:5401346/1‑93 (MQ=255)

                                         tatCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCt                                                <  1:6112523/93‑1 (MQ=255)

                                         tatCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCt                                                >  1:4285775/1‑93 (MQ=255)

                                           tCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGa                                              >  2:4096519/1‑93 (MQ=255)

                                            cGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGAt                                             <  2:1103721/93‑1 (MQ=255)

                                              ggAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGt                                           >  2:135406/1‑93 (MQ=255)

                                              ggAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGt                                           <  1:2911654/93‑1 (MQ=255)

                                                 aaTTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGa                                        <  1:1070550/93‑1 (MQ=255)

                                                 aaTTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGa                                        >  1:3640697/1‑93 (MQ=255)

                                                  aTTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGaa                                       >  2:5038031/1‑93 (MQ=255)

                                                    tCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAAcc                                     >  2:6286641/1‑93 (MQ=255)

                                                     cACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAAccc                                    <  1:3727101/93‑1 (MQ=255)

                                                     cACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAAccc                                    >  2:2362612/1‑93 (MQ=255)

                                                      aCTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCa                                   >  2:6136032/1‑93 (MQ=255)

                                                       cTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAt                                  >  1:2611293/1‑93 (MQ=255)

                                                       cTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAt                                  >  2:709660/1‑93 (MQ=255)

                                                       cTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAt                                  >  1:6393107/1‑93 (MQ=255)

                                                        tGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAtt                                 <  1:6429248/93‑1 (MQ=255)

                                                         gggTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTg                                <  1:2315279/93‑1 (MQ=255)

                                                          ggTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTga                               <  1:3524267/93‑1 (MQ=255)

                                                           gTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTgag                              <  1:1161536/93‑1 (MQ=255)

                                                           gTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTgag                              <  2:3491988/93‑1 (MQ=255)

                                                            ttttCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTgaga                             <  1:5046408/93‑1 (MQ=255)

                                                             tttCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGaa                            <  2:2080205/93‑1 (MQ=255)

                                                               tCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATc                          <  1:6022016/93‑1 (MQ=255)

                                                                cATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAATGAGAATCt                         <  1:927029/93‑1 (MQ=255)

                                                                  tGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTgg                       <  1:1479026/93‑1 (MQ=255)

                                                                  tGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTgg                       >  2:2847787/1‑93 (MQ=255)

                                                                    gtgtCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGCATCTGGta                     >  2:4622675/1‑92 (MQ=255)

                                                                    gtgtCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTc                     <  1:5742448/93‑1 (MQ=255)

                                                                      gtCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCaa                   >  1:2673692/1‑93 (MQ=255)

                                                                       tCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAg                  <  2:2614169/93‑1 (MQ=255)

                                                                        cACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGa                 <  2:4158047/93‑1 (MQ=255)

                                                                        cACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGa                 <  1:5132720/93‑1 (MQ=255)

                                                                         aCGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGAc                <  2:3381086/93‑1 (MQ=255)

                                                                            cTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGt             >  2:5912045/1‑93 (MQ=255)

                                                                              ccTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTAc           >  1:2988204/1‑93 (MQ=255)

                                                                               cTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACg          >  2:6381126/1‑93 (MQ=255)

                                                                                tGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGt         <  1:2323015/93‑1 (MQ=255)

                                                                                tGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGt         <  1:4107062/93‑1 (MQ=255)

                                                                                 ggTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGtt        >  2:1767778/1‑93 (MQ=255)

                                                                                   tATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGGCCGTACGTTcc      <  2:329327/93‑1 (MQ=255)

                                                                                      tCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGc   >  1:5270159/1‑93 (MQ=255)

CACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCAGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCA  >  NC_000913/4601242‑4601421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCAGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCAATAC  >  NC_000913/4601239‑4601425

ATCCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCG                                                                                               <  SRR4302534.6024505/94‑1 (MQ=60)

ATCCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCG                                                                                               <  SRR4302534.1242201/94‑1 (MQ=60)

ATCCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCG                                                                                               >  SRR4302534.202928/1‑94 (MQ=60)

 TCCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGG                                                                                              >  SRR4302534.1461413/1‑94 (MQ=60)

  CCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGG                                                                                             >  SRR4302534.3972219/1‑94 (MQ=60)

  CCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGG                                                                                             >  SRR4302534.1874864/1‑94 (MQ=60)

  CCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCC‑GGC                                                                                            >  SRR4302534.2869165/1‑94 (MQ=60)

   CACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGC                                                                                            >  SRR4302534.2226848/1‑94 (MQ=60)

    ACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCA                                                                                           >  SRR4302534.4667619/1‑94 (MQ=60)

     CGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAG                                                                                          <  SRR4302534.5667631/94‑1 (MQ=60)

      GTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGT                                                                                         >  SRR4302534.2621995/1‑94 (MQ=60)

       TTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTA                                                                                        >  SRR4302534.2643327/1‑94 (MQ=60)

           GTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAAC                                                                                    >  SRR4302534.2998103/1‑94 (MQ=60)

             TTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTG                                                                                  >  SRR4302534.1015558/1‑94 (MQ=60)

             TTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTG                                                                                  >  SRR4302534.3828891/1‑94 (MQ=60)

             TTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTG                                                                                  <  SRR4302534.1122111/94‑1 (MQ=60)

             TTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCAGGCAGTAGAACTG                                                                                  >  SRR4302534.2381348/1‑94 (MQ=60)

               GTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCT                                                                                >  SRR4302534.4860057/1‑94 (MQ=60)

                TGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTC                                                                               >  SRR4302534.2929316/1‑94 (MQ=60)

                 GAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCA                                                                              <  SRR4302534.5334868/94‑1 (MQ=60)

                 GAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTAATACCGCGCAGTAGAACTGCTCA                                                                              >  SRR4302534.3596652/1‑94 (MQ=60)

                  AACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCAT                                                                             >  SRR4302534.5371643/1‑94 (MQ=60)

                  AACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCAT                                                                             >  SRR4302534.3545407/1‑94 (MQ=60)

                    CATTATTATTCTTTAATCTTACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCCTGT                                                                           <  SRR4302534.916727/94‑1 (MQ=60)

                    CATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGT                                                                           <  SRR4302534.3968067/94‑1 (MQ=60)

                        ATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCGTGTGCCC                                                                       <  SRR4302534.6205228/94‑1 (MQ=60)

                         TTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCT                                                                      <  SRR4302534.5429648/94‑1 (MQ=60)

                         TTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCT                                                                      <  SRR4302534.3386068/94‑1 (MQ=60)

                         TTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCT                                                                      >  SRR4302534.5346873/1‑94 (MQ=60)

                         TTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCT                                                                      <  SRR4302534.6620968/94‑1 (MQ=60)

                          TATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTA                                                                     <  SRR4302534.2315555/94‑1 (MQ=60)

                           ATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTAC                                                                    <  SRR4302534.2185241/94‑1 (MQ=60)

                            TTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACG                                                                   >  SRR4302534.3201221/1‑94 (MQ=60)

                            TTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACG                                                                   >  SRR4302534.5580987/1‑94 (MQ=60)

                            TTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACG                                                                   >  SRR4302534.912204/1‑94 (MQ=60)

                            TTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACG                                                                   >  SRR4302534.1411553/1‑94 (MQ=60)

                            TTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACG                                                                   <  SRR4302534.6205790/94‑1 (MQ=60)

                            TTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACG                                                                   >  SRR4302534.2045509/1‑94 (MQ=60)

                             TCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGG                                                                  <  SRR4302534.6590324/94‑1 (MQ=60)

                             TCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGG                                                                  >  SRR4302534.1709990/1‑94 (MQ=60)

                              CTTTAATCTCACAATGTCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGC                                                                 >  SRR4302534.4025195/1‑94 (MQ=60)

                              CTTTAATCTCACAATATCGGTAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGC                                                                 <  SRR4302534.2905413/94‑1 (MQ=60)

                              CTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGC                                                                 >  SRR4302534.3826845/1‑94 (MQ=60)

                              CTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGC                                                                 <  SRR4302534.3654328/94‑1 (MQ=60)

                               TTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCCGGCAGTAGAACTGCTCATGTGCCCTACGGCA                                                                >  SRR4302534.1502788/1‑94 (MQ=60)

                                TTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGA                                                               <  SRR4302534.3805605/94‑1 (MQ=60)

                                TTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGA                                                               <  SRR4302534.6337651/94‑1 (MQ=60)

                                 TAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTGACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGAC                                                              >  SRR4302534.490941/1‑94 (MQ=60)

                                 TAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGAC                                                              >  SRR4302534.4641485/1‑94 (MQ=60)

                                 TAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGAC                                                              >  SRR4302534.5144923/1‑94 (MQ=60)

                                  AATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACG                                                             <  SRR4302534.364739/94‑1 (MQ=60)

                                   ATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGT                                                            >  SRR4302534.2088978/1‑94 (MQ=60)

                                    TCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTT                                                           >  SRR4302534.6654003/1‑94 (MQ=60)

                                     CTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTA                                                          >  SRR4302534.2351478/1‑94 (MQ=60)

                                       CACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATT                                                        >  SRR4302534.2621375/1‑94 (MQ=60)

                                       CACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATT                                                        <  SRR4302534.2636923/94‑1 (MQ=60)

                                       CACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATT                                                        <  SRR4302534.2953046/94‑1 (MQ=60)

                                       CACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATT                                                        <  SRR4302534.2968093/94‑1 (MQ=60)

                                       CACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATT                                                        <  SRR4302534.3469580/94‑1 (MQ=60)

                                       CACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATT                                                        <  SRR4302534.3137269/94‑1 (MQ=60)

                                        ACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTG                                                       <  SRR4302534.5468373/94‑1 (MQ=60)

                                        ACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTG                                                       >  SRR4302534.2332956/1‑94 (MQ=60)

                                        ACAATATCGGGAAAGTCACTGGGTTTTCATGGTCTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCTCTACGGCGACGTTAgtt                                                       >  SRR4302534.2575971/1‑91 (MQ=60)

                                         CAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGT                                                      <  SRR4302534.4544301/94‑1 (MQ=60)

                                         CAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGT                                                      >  SRR4302534.5001865/1‑94 (MQ=60)

                                          AATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTC                                                     >  SRR4302534.5633106/1‑94 (MQ=60)

                                          AATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTC                                                     >  SRR4302534.749572/1‑94 (MQ=60)

                                          AATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTC                                                     >  SRR4302534.3773833/1‑94 (MQ=60)

                                          AATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTC                                                     >  SRR4302534.6588916/1‑94 (MQ=60)

                                           ATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCT                                                    <  SRR4302534.1298870/94‑1 (MQ=60)

                                           ATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCT                                                    >  SRR4302534.4401872/1‑94 (MQ=60)

                                            TATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTG                                                   <  SRR4302534.2029179/94‑1 (MQ=60)

                                            TATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTG                                                   <  SRR4302534.6278804/94‑1 (MQ=60)

                                             ATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGA                                                  >  SRR4302534.3740342/1‑94 (MQ=60)

                                              TCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGAT                                                 <  SRR4302534.6069837/94‑1 (MQ=60)

                                              TCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGAT                                                 >  SRR4302534.5208758/1‑94 (MQ=60)

                                               CGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATG                                                >  SRR4302534.5181441/1‑94 (MQ=60)

                                               CGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATG                                                >  SRR4302534.2972096/1‑94 (MQ=60)

                                               CGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATG                                                >  SRR4302534.4916510/1‑94 (MQ=60)

                                                 GGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTT                                              <  SRR4302534.2988082/94‑1 (MQ=60)

                                                   AAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGA                                            >  SRR4302534.3738544/1‑94 (MQ=60)

                                                    AATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAA                                           <  SRR4302534.1098320/94‑1 (MQ=60)

                                                    AATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAA                                           <  SRR4302534.5582036/94‑1 (MQ=60)

                                                    AATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAA                                           >  SRR4302534.4393443/1‑94 (MQ=60)

                                                     ATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAAC                                          <  SRR4302534.1481567/94‑1 (MQ=60)

                                                      TTCACTGGGTTTTCATGGTGCCACGCTCCTGGTATTCCCGGGCAGTAGACCTGCGCATGTGCCCTACGGCAACGTTATTGTCTGATGTTGATCC                                         <  SRR4302534.2324090/94‑1 (MQ=60)

                                                        CACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCA                                       <  SRR4302534.3827273/94‑1 (MQ=60)

                                                         ACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAT                                      >  SRR4302534.2680383/1‑94 (MQ=60)

                                                         ACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAT                                      >  SRR4302534.6565772/1‑94 (MQ=60)

                                                         ACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGCTGAACCCAT                                      >  SRR4302534.110069/1‑94 (MQ=60)

                                                         ACTGGGTTTTCATGGTGTCACGCTCCTGGCATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAT                                      >  SRR4302534.2052630/1‑94 (MQ=60)

                                                          CTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATT                                     >  SRR4302534.2740603/1‑94 (MQ=60)

                                                          CTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATT                                     <  SRR4302534.4992786/94‑1 (MQ=60)

                                                          CTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATT                                     <  SRR4302534.5402253/94‑1 (MQ=60)

                                                           TGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTG                                    <  SRR4302534.3660744/94‑1 (MQ=60)

                                                           TGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTG                                    <  SRR4302534.6602600/94‑1 (MQ=60)

                                                            GGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGA                                   <  SRR4302534.2376717/94‑1 (MQ=60)

                                                            GGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGA                                   >  SRR4302534.5745174/1‑94 (MQ=60)

                                                            GGGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGA                                   <  SRR4302534.3680456/94‑1 (MQ=60)

                                                             GGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTTAG                                  <  SRR4302534.4166076/94‑1 (MQ=60)

                                                             GGTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAG                                  <  SRR4302534.3619058/94‑1 (MQ=60)

                                                              GTTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGA                                 <  SRR4302534.1192022/94‑1 (MQ=60)

                                                               TTTTCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAA                                <  SRR4302534.5182669/94‑1 (MQ=60)

                                                                  TCATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCT                             <  SRR4302534.6185680/94‑1 (MQ=60)

                                                                   CATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTG                            <  SRR4302534.3957664/94‑1 (MQ=60)

                                                                   CATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTG                            >  SRR4302534.4116006/1‑94 (MQ=60)

                                                                   CATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTG                            <  SRR4302534.1181200/94‑1 (MQ=60)

                                                                   CATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCAATGAGAATCTG                            <  SRR4302534.950628/94‑1 (MQ=60)

                                                                    ATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACGCATTGAGAATCTGT                           >  SRR4302534.2935546/1‑94 (MQ=60)

                                                                    ATGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGG                           >  SRR4302534.5029673/1‑94 (MQ=60)

                                                                     TGGTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGT                          <  SRR4302534.1517917/94‑1 (MQ=60)

                                                                       GTGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCA                        <  SRR4302534.5898131/94‑1 (MQ=60)

                                                                        TGTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAA                       >  SRR4302534.2744358/1‑94 (MQ=60)

                                                                         GTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAG                      <  SRR4302534.4659078/94‑1 (MQ=60)

                                                                         GTCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAG                      <  SRR4302534.5120864/94‑1 (MQ=60)

                                                                          TCACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGA                     <  SRR4302534.4530480/94‑1 (MQ=60)

                                                                           CACGCTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGAC                    <  SRR4302534.5271283/94‑1 (MQ=60)

                                                                               CTCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTA                >  SRR4302534.52673/1‑94 (MQ=60)

                                                                                TCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTAC               <  SRR4302534.213455/94‑1 (MQ=60)

                                                                                TCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTAC               >  SRR4302534.3066340/1‑94 (MQ=60)

                                                                                TCCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTAC               <  SRR4302534.2038590/94‑1 (MQ=60)

                                                                                 CCTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACG              <  SRR4302534.3435570/94‑1 (MQ=60)

                                                                                  CTGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGT             <  SRR4302534.996685/94‑1 (MQ=60)

                                                                                   TGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAGCCCATTGAGAATCTGGTCAAGACCGTACGTT            <  SRR4302534.752286/94‑1 (MQ=60)

                                                                                   TGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTT            <  SRR4302534.2309129/94‑1 (MQ=60)

                                                                                   TGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTT            <  SRR4302534.4217523/94‑1 (MQ=60)

                                                                                   TGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTT            <  SRR4302534.1172709/94‑1 (MQ=60)

                                                                                   TGGTATTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTT            <  SRR4302534.2384668/94‑1 (MQ=60)

                                                                                        TTCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGC       >  SRR4302534.5412519/1‑94 (MQ=60)

                                                                                         TCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCA      <  SRR4302534.283783/94‑1 (MQ=60)

                                                                                         TCCCGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCA      >  SRR4302534.990706/1‑94 (MQ=60)

                                                                                            CGGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCAATA   >  SRR4302534.574696/1‑94 (MQ=60)

                                                                                             GGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCAATAC  <  SRR4302534.4652440/94‑1 (MQ=60)

ATCCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATATCGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCAGGCAGTAGAACTGCTCATGTGCCCTACGGCGACGTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCAATAC  >  NC_000913/4601239‑4601425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`