Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,636,923	T→C	W393R (TGG→CGG)	creD →	CreD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,636,923	0	T	C	100.0%	702.7 / NA	199	W393R (TGG→CGG)	creD	CreD
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (109/90); total (109/90)

Only 100 of 206 total aligned reads displayed.

ATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGT  >  NC_000913/4636833‑4637012

aTGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCgg                                                                                         >  2:2721557/1‑93 (MQ=255)

  gAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCgggg                                                                                       >  1:4865349/1‑93 (MQ=255)

  gAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCgggg                                                                                       >  2:2730910/1‑93 (MQ=255)

  gAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCgggg                                                                                       >  2:5249389/1‑93 (MQ=255)

   aaCGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGa                                                                                      >  1:4253416/1‑93 (MQ=255)

    aCGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGAc                                                                                     <  1:4364853/93‑1 (MQ=255)

     cGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACt                                                                                    >  2:3437251/1‑93 (MQ=255)

     cGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACt                                                                                    >  1:1644708/1‑93 (MQ=255)

     cGGTAGTGATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACt                                                                                    <  2:4114054/93‑1 (MQ=255)

      ggTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTg                                                                                   >  2:4415834/1‑93 (MQ=255)

       gTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGc                                                                                  >  1:1941918/1‑93 (MQ=255)

       gTATTTATTTGCAAGCGGTATTGAAAGGTTGGGGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGc                                                                                  >  2:2309787/1‑93 (MQ=255)

        tatttattTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCt                                                                                 >  1:5622769/1‑93 (MQ=255)

        tatttattTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCt                                                                                 <  1:289317/93‑1 (MQ=255)

        tatttattTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCt                                                                                 <  2:5769610/93‑1 (MQ=255)

          tttatttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCa                                                                               >  1:5274524/1‑93 (MQ=255)

            tatttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAAc                                                                             <  2:3033312/93‑1 (MQ=255)

             atttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAAct                                                                            >  1:3940671/1‑93 (MQ=255)

             atttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAAct                                                                            >  1:3589919/1‑93 (MQ=255)

              tttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAActc                                                                           <  1:1856902/93‑1 (MQ=255)

              tttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAActc                                                                           <  1:5780811/93‑1 (MQ=255)

              tttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAActc                                                                           >  2:2557009/1‑93 (MQ=255)

              tttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAActc                                                                           >  1:3375377/1‑93 (MQ=255)

              tttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAActc                                                                           >  2:4536646/1‑93 (MQ=255)

              tttGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACACTCGCGCTGTTGTTGCTGGCTGGTGTGATGCGGGGACTGCTCAActc                                                                           >  2:5226565/1‑93 (MQ=255)

                 gCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGc                                                                        <  1:2699007/93‑1 (MQ=255)

                 gCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGc                                                                        >  2:1707028/1‑93 (MQ=255)

                 gCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGc                                                                        >  2:640157/1‑93 (MQ=255)

                  cAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGcc                                                                       <  2:4201718/93‑1 (MQ=255)

                   aaGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCg                                                                      >  1:1411108/1‑93 (MQ=255)

                    aGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGa                                                                     >  2:2833793/1‑93 (MQ=255)

                    aGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGa                                                                     <  2:3614182/93‑1 (MQ=255)

                     gCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGAt                                                                    >  1:2188738/1‑93 (MQ=255)

                        gTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAgc                                                                 >  1:5456099/1‑93 (MQ=255)

                          aTTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAgcgc                                                               >  2:3834576/1‑93 (MQ=255)

                          aTTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAgcgc                                                               >  2:6097636/1‑93 (MQ=255)

                           ttGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAgcgcg                                                              >  1:1183303/1‑93 (MQ=255)

                           ttGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAgcgcg                                                              >  1:4596502/1‑93 (MQ=255)

                            tGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAgcgcgc                                                             <  1:4568677/93‑1 (MQ=255)

                            tGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAgcgcgc                                                             <  2:1196465/93‑1 (MQ=255)

                             gAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCt                                                            >  1:240624/1‑93 (MQ=255)

                             gAAAGGTTGGTGCAACAGCATGTTATTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCt                                                            >  1:6226760/1‑93 (MQ=255)

                              aaaGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCtg                                                           >  1:2020329/1‑93 (MQ=255)

                               aaGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCtgt                                                          <  1:2362853/93‑1 (MQ=255)

                               aaGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCtgt                                                          >  2:2882214/1‑93 (MQ=255)

                                aGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCtgtt                                                         >  1:4751259/1‑93 (MQ=255)

                                   ttGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTgttgtt                                                      <  2:6320603/93‑1 (MQ=255)

                                    tGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGttgttg                                                     <  1:6168997/93‑1 (MQ=255)

                                     ggTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTgg                                                    <  2:4751806/93‑1 (MQ=255)

                                      gTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTggg                                                   >  1:1773171/1‑93 (MQ=255)

                                       tGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGa                                                  <  1:1119216/93‑1 (MQ=255)

                                       tGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGa                                                  <  2:5625308/93‑1 (MQ=255)

                                       tGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGa                                                  <  1:925058/93‑1 (MQ=255)

                                          aaCAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAAcc                                               >  2:1781687/1‑93 (MQ=255)

                                          aaCAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAAcc                                               >  1:2737727/1‑93 (MQ=255)

                                          aaCAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAAcc                                               >  2:5509480/1‑93 (MQ=255)

                                           aCAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCa                                              <  2:3652338/93‑1 (MQ=255)

                                           aCAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCa                                              <  1:3223116/93‑1 (MQ=255)

                                            cAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAg                                             <  1:4139547/93‑1 (MQ=255)

                                             aGCATGTTGTTTCCCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAgt                                            <  2:4384786/93‑1 (MQ=255)

                                             aGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAgt                                            >  1:531240/1‑93 (MQ=255)

                                              gCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAgtg                                           >  1:3762304/1‑93 (MQ=255)

                                              gCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAgtg                                           <  2:2408156/93‑1 (MQ=255)

                                              gCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAgtg                                           >  2:3315175/1‑93 (MQ=255)

                                               cATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAgtgt                                          >  1:847852/1‑93 (MQ=255)

                                                 tgttgtTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGc                                        <  1:6403736/93‑1 (MQ=255)

                                                 tgttgtTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGc                                        >  1:5817020/1‑93 (MQ=255)

                                                 tgttgtTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGc                                        >  1:1654851/1‑93 (MQ=255)

                                                  gttgttTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCt                                       <  1:3256000/93‑1 (MQ=255)

                                                    tgttTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCtgg                                     <  2:3206633/93‑1 (MQ=255)

                                                     gttTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCtggt                                    <  2:6248465/93‑1 (MQ=255)

                                                      tttACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCtggtg                                   <  2:242636/93‑1 (MQ=255)

                                                       ttACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCtggtgg                                  <  1:1826749/93‑1 (MQ=255)

                                                        tACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCtggtggt                                 <  2:3415895/93‑1 (MQ=255)

                                                        tACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCtggtggt                                 <  2:5737488/93‑1 (MQ=255)

                                                         tcccTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCtggtggtg                                <  2:5210940/92‑1 (MQ=255)

                                                            cTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGgcg                             >  1:4319245/1‑93 (MQ=255)

                                                             tCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGgcgc                            <  1:3427339/93‑1 (MQ=255)

                                                             tCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGgcgc                            >  1:5840834/1‑93 (MQ=255)

                                                             tCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGgcgc                            >  1:2068185/1‑93 (MQ=255)

                                                              cgcgCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCt                           >  2:6106808/1‑93 (MQ=255)

                                                                cgcTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTgg                         <  2:5561157/93‑1 (MQ=255)

                                                                 gcTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGc                        >  2:2449380/1‑93 (MQ=255)

                                                                  cTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGcc                       >  1:4925279/1‑93 (MQ=255)

                                                                  cTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGcc                       >  1:2814729/1‑93 (MQ=255)

                                                                      tgttgCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCa                   <  2:4898550/93‑1 (MQ=255)

                                                                      tgttgCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCa                   >  1:2307878/1‑93 (MQ=255)

                                                                      tgttgCTGGATGGTGTGATGCGGGGACGGCTCAGCTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCa                   <  1:187883/93‑1 (MQ=255)

                                                                            tGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGt             >  1:5156299/1‑93 (MQ=255)

                                                                            tGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGt             >  1:1365042/1‑93 (MQ=255)

                                                                            tGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGt             <  2:19758/93‑1 (MQ=255)

                                                                            tGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGt             <  1:5045653/93‑1 (MQ=255)

                                                                             ggATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGtt            >  2:1795155/1‑93 (MQ=255)

                                                                             ggATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGtt            >  2:6342874/1‑93 (MQ=255)

                                                                                tGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTtgt         >  2:2467123/1‑93 (MQ=255)

                                                                                tGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTtgt         <  1:3675731/93‑1 (MQ=255)

                                                                                tGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTtgt         <  2:5806693/93‑1 (MQ=255)

                                                                                 ggTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTtgtg        <  1:3107870/93‑1 (MQ=255)

                                                                                     tgATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGAccc    <  1:805898/93‑1 (MQ=255)

                                                                                     tgATGCGCGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGAccc    <  2:4932970/93‑1 (MQ=255)

ATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGT  >  NC_000913/4636833‑4637012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTA  >  NC_000913/4636830‑4637013

ATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGC                                                                                            >  SRR4302534.2138795/1‑94 (MQ=60)

 TAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCG                                                                                           >  SRR4302534.2953372/1‑94 (MQ=60)

 TAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCG                                                                                           <  SRR4302534.4947258/94‑1 (MQ=60)

  AATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGG                                                                                          >  SRR4302534.3389103/1‑94 (MQ=60)

  AATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGGGTGATGCGG                                                                                          >  SRR4302534.1881710/1‑94 (MQ=60)

    TGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGG                                                                                        >  SRR4302534.4997325/1‑94 (MQ=60)

    TGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGGGATGCGGGG                                                                                        <  SRR4302534.6464569/94‑1 (MQ=60)

     GAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGA                                                                                       >  SRR4302534.4368191/1‑94 (MQ=60)

     GAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGA                                                                                       <  SRR4302534.5425273/94‑1 (MQ=60)

     GAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGA                                                                                       >  SRR4302534.3732152/1‑94 (MQ=60)

       ACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACT                                                                                     >  SRR4302534.1687582/1‑94 (MQ=60)

       ACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACT                                                                                     <  SRR4302534.4482539/94‑1 (MQ=60)

         GGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGAGTGC                                                                                   >  SRR4302534.2404379/1‑94 (MQ=60)

         GGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGC                                                                                   >  SRR4302534.1992701/1‑94 (MQ=60)

          GTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCT                                                                                  >  SRR4302534.5774923/1‑94 (MQ=60)

           TATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTC                                                                                 <  SRR4302534.296801/94‑1 (MQ=60)

            ATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCA                                                                                >  SRR4302534.5416973/1‑94 (MQ=60)

               TATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACT                                                                             <  SRR4302534.6406945/94‑1 (MQ=60)

               TATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACT                                                                             >  SRR4302534.3686473/1‑94 (MQ=60)

               TATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACT                                                                             >  SRR4302534.4046204/1‑94 (MQ=60)

                ATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTC                                                                            >  SRR4302534.3465835/1‑94 (MQ=60)

                 TTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCT                                                                           <  SRR4302534.1930791/94‑1 (MQ=60)

                 TTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCT                                                                           <  SRR4302534.1905226/94‑1 (MQ=60)

                 TTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCT                                                                           <  SRR4302534.5937622/94‑1 (MQ=60)

                   TGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGC                                                                         <  SRR4302534.2036507/94‑1 (MQ=60)

                    GCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCC                                                                        <  SRR4302534.2770308/94‑1 (MQ=60)

                    GCAAGCGGTATTGAAAGGTTGATGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCC                                                                        >  SRR4302534.5867266/1‑94 (MQ=60)

                     CAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCG                                                                       <  SRR4302534.4329676/94‑1 (MQ=60)

                     CAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCG                                                                       >  SRR4302534.1448229/1‑94 (MQ=60)

                      AAGCGGTATTGAAAGGCTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGA                                                                      >  SRR4302534.444946/1‑94 (MQ=60)

                       AGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGAT                                                                     >  SRR4302534.2246610/1‑94 (MQ=60)

                       AGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGAT                                                                     >  SRR4302534.5368461/1‑94 (MQ=60)

                        GCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATA                                                                    >  SRR4302534.2926933/1‑94 (MQ=60)

                          GGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGC                                                                  >  SRR4302534.5603124/1‑94 (MQ=60)

                           GTATTGAAAGGTTGGTGCAACAGCATGCTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCG                                                                 <  SRR4302534.1697618/94‑1 (MQ=60)

                            TATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGC                                                                <  SRR4302534.3660727/94‑1 (MQ=60)

                            TATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGC                                                                >  SRR4302534.1641141/1‑94 (MQ=60)

                             ATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCG                                                               >  SRR4302534.4721249/1‑94 (MQ=60)

                             ATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCG                                                               >  SRR4302534.1214401/1‑94 (MQ=60)

                               TGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCT                                                             >  SRR4302534.246917/1‑94 (MQ=60)

                               TGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCT                                                             <  SRR4302534.4496094/94‑1 (MQ=60)

                               TGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCT                                                             <  SRR4302534.4692538/94‑1 (MQ=60)

                               TGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCT                                                             <  SRR4302534.5543531/94‑1 (MQ=60)

                               TGAAAGGTTGGTGCAACAGCATGTTATTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCT                                                             >  SRR4302534.6395813/1‑94 (MQ=60)

                                GAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTG                                                            >  SRR4302534.2073190/1‑94 (MQ=60)

                                  AAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTT                                                          >  SRR4302534.4880236/1‑94 (MQ=60)

                                  AAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTT                                                          >  SRR4302534.1208737/1‑94 (MQ=60)

                                  AAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTT                                                          >  SRR4302534.18329/1‑94 (MQ=60)

                                  AAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTT                                                          <  SRR4302534.2425572/94‑1 (MQ=60)

                                    GGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGT                                                        <  SRR4302534.5036072/94‑1 (MQ=60)

                                       TGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGG                                                     <  SRR4302534.6336781/94‑1 (MQ=60)

                                       TGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGG                                                     >  SRR4302534.3800405/1‑94 (MQ=60)

                                        GGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGG                                                    >  SRR4302534.1819196/1‑94 (MQ=60)

                                          TGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAA                                                  <  SRR4302534.948617/94‑1 (MQ=60)

                                          TGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAA                                                  <  SRR4302534.1148453/94‑1 (MQ=60)

                                          TGCAACAGCATGTTGTTTACCCTCGCGCTGTGGTTGGTCGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAA                                                  <  SRR4302534.473175/94‑1 (MQ=60)

                                          TACAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAA                                                  >  SRR4302534.72758/1‑94 (MQ=60)

                                           GCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAAC                                                 >  SRR4302534.2458874/1‑94 (MQ=60)

                                            CAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACC                                                >  SRR4302534.2809882/1‑94 (MQ=60)

                                             AACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCA                                               <  SRR4302534.2092494/94‑1 (MQ=60)

                                             AACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCA                                               >  SRR4302534.179796/1‑94 (MQ=60)

                                             AACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCA                                               >  SRR4302534.3868387/1‑94 (MQ=60)

                                              ACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAG                                              <  SRR4302534.3308712/94‑1 (MQ=60)

                                               CAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGT                                             <  SRR4302534.4251262/94‑1 (MQ=60)

                                               CAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGT                                             >  SRR4302534.544431/1‑94 (MQ=60)

                                                AGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTG                                            >  SRR4302534.3863316/1‑94 (MQ=60)

                                                AGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTG                                            <  SRR4302534.832480/94‑1 (MQ=60)

                                                 GCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGT                                           >  SRR4302534.869219/1‑94 (MQ=60)

                                                 GCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGT                                           >  SRR4302534.3259585/1‑94 (MQ=60)

                                                  CATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTG                                          <  SRR4302534.5671100/94‑1 (MQ=60)

                                                  CATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTG                                          >  SRR4302534.4714651/1‑94 (MQ=60)

                                                   ATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGC                                         >  SRR4302534.1697980/1‑94 (MQ=60)

                                                   ATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGC                                         >  SRR4302534.5974904/1‑94 (MQ=60)

                                                    TGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCT                                        <  SRR4302534.282071/94‑1 (MQ=60)

                                                    TGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCT                                        <  SRR4302534.6576611/94‑1 (MQ=60)

                                                     GTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG                                       <  SRR4302534.2284832/94‑1 (MQ=60)

                                                     GTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTG                                       <  SRR4302534.3342717/94‑1 (MQ=60)

                                                       TGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGT                                     <  SRR4302534.3317233/94‑1 (MQ=60)

                                                        GTTTTCCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTG                                    <  SRR4302534.4430537/94‑1 (MQ=60)

                                                        GTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTG                                    >  SRR4302534.5948935/1‑94 (MQ=60)

                                                          TTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGT                                  <  SRR4302534.1874264/94‑1 (MQ=60)

                                                           TACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTG                                 <  SRR4302534.4855756/94‑1 (MQ=60)

                                                           TACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTG                                 <  SRR4302534.904440/94‑1 (MQ=60)

                                                           TACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTG                                 >  SRR4302534.3490168/1‑94 (MQ=60)

                                                            TCCCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGG                                <  SRR4302534.2729820/94‑1 (MQ=60)

                                                             CCCTCGCGCTGTTGTTGCTGGATGGGGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGC                               >  SRR4302534.1353668/1‑94 (MQ=60)

                                                             CCCTCGCGCTGTTGTTGCTGGATGGCGAGATGCGGGGCCTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGcggg                               >  SRR4302534.2768045/1‑90 (MQ=60)

                                                              CCTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCG                              >  SRR4302534.4436168/1‑94 (MQ=60)

                                                               CTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGC                             >  SRR4302534.2122277/1‑94 (MQ=60)

                                                               CTCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGC                             >  SRR4302534.5999386/1‑94 (MQ=60)

                                                                TCGCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCT                            <  SRR4302534.3519412/94‑1 (MQ=60)

                                                                 CGCGTTGTTGTTGCTGGATTGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTG                           <  SRR4302534.2782088/94‑1 (MQ=60)

                                                                  GCGCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGG                          <  SRR4302534.3044773/94‑1 (MQ=60)

                                                                    GCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCC                        >  SRR4302534.4968597/1‑94 (MQ=60)

                                                                    GCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCC                        >  SRR4302534.5058761/1‑94 (MQ=60)

                                                                    GCTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCC                        >  SRR4302534.2888731/1‑94 (MQ=60)

                                                                     CTGTTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCG                       <  SRR4302534.2186989/94‑1 (MQ=60)

                                                                        TTGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCA                    >  SRR4302534.2369135/1‑94 (MQ=60)

                                                                         TGTTGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCAT                   >  SRR4302534.4673615/1‑94 (MQ=60)

                                                                         TGTTGCTGGATGGTGTGATGCGGGGACGGCTCAGCTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCAT                   <  SRR4302534.192824/94‑1 (MQ=60)

                                                                            TGCTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGAT                >  SRR4302534.5992326/1‑94 (MQ=60)

                                                                              CTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGT              <  SRR4302534.6275707/94‑1 (MQ=60)

                                                                              CTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGT              >  SRR4302534.1400998/1‑94 (MQ=60)

                                                                              CTGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGT              >  SRR4302534.5295345/1‑94 (MQ=60)

                                                                               TGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTT             <  SRR4302534.5181901/94‑1 (MQ=60)

                                                                               TGGATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTT             <  SRR4302534.5181902/94‑1 (MQ=60)

                                                                                 GATGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTG           <  SRR4302534.5095378/94‑1 (MQ=60)

                                                                                   TGGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTG         <  SRR4302534.3774537/94‑1 (MQ=60)

                                                                                    GGTGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGA        <  SRR4302534.3189596/94‑1 (MQ=60)

                                                                                      TGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACC      >  SRR4302534.4095086/1‑94 (MQ=60)

                                                                                      TGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACC      >  SRR4302534.6352073/1‑94 (MQ=60)

                                                                                      TGTGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACC      <  SRR4302534.1425540/94‑1 (MQ=60)

                                                                                        TGATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCG    <  SRR4302534.826146/94‑1 (MQ=60)

                                                                                         GATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGT   >  SRR4302534.1927606/1‑94 (MQ=60)

                                                                                          ATGCGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTA  >  SRR4302534.2872102/1‑94 (MQ=60)

ATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGATGGTGTGATGTGGGGACTGCTCAACTCTGCCGATAGCGCGCTGTTGTTGGGAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTA  >  NC_000913/4636830‑4637013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`