Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F35 I0 R1 271 8871.0 10354886 98.4% 10189207 136.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 4,615,707 A→T 24.0% E120V (GAA→GTA)  CIW80_RS23065 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226864,615,7070AT24.0% 74.1 / 7.0 71E120V (GAA→GTA) CIW80_RS23065hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (34/18);  new base T (14/2);  total (51/20)
Fisher's exact test for biased strand distribution p-value = 1.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCGGTTATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTAA  >  NZ_CP022686/4615568‑4615775
                                                                                                                                           |                                                                     
tCGGTTATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATGTGGa                                                                       >  6:770982/1‑140 (MQ=17)
tCGGTTATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATATGGa                                                                       >  4:172869/1‑140 (MQ=17)
tCGGTTATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTATTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATATGGa                                                                       >  4:865289/1‑140 (MQ=12)
 agggtctCTGTTTTTTTATATTTGGATTGGCGTTTGATAATAATCGTAATCAACTTGTTAAGAATTACTTGATCGATCTAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGaa                                                                      <  8:692452/134‑1 (MQ=11)
     tATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATTATATTGAatatt                                                                  >  8:551199/1‑139 (MQ=255)
     tATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATCTGGAatatt                                                                  >  1:326313/1‑139 (MQ=12)
     tATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTGGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAttaag                                                                  >  4:568586/1‑138 (MQ=12)
     tATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTAGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATCTGGAttatt                                                                  >  3:784844/1‑139 (MQ=255)
       tCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATCTGGAATATTGt                                                                >  3:1051640/1‑140 (MQ=12)
        cTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTGATACACTGTCGTGTTTTTTGTAATATGGTATATTGtt                                                               >  4:245892/1‑139 (MQ=11)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTAATATGGAATATgtgtat                                                             >  2:292791/1‑135 (MQ=255)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATCTGGAATAAGGTAAg                                                             >  8:394296/1‑140 (MQ=17)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTTATATGGAATATTGTaat                                                             >  3:580893/1‑139 (MQ=11)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTAAAATTGGATATGGTaat                                                             >  7:430912/1‑139 (MQ=11)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATGTGGTatattttaaa                                                             >  2:60850/1‑134 (MQ=11)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAAACTAGAAAATGGGaaa                                                             >  8:443671/1‑139 (MQ=11)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTATATTTTTTATACACTGTCGTGTTTTTTATTatatggtatatggttat                                                             >  3:716506/1‑137 (MQ=11)
          gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGAGCGATATAGTATGGTTTTTAGGTGTTGTTTTATGTTTTATACACTGTCGTTTTTTTTCGAATCTGGAATATGGGAAg                                                             >  4:940353/1‑140 (MQ=255)
          gtgtTTTTATATATGGATTGGCGTGTGATCATAATCGTAATCCCCTTGATAAGAATTACTTGATCGAAATAGTATGGTTTTTAGGTGTAGTTTTATTTTTTATACACTGTCGTGTGTTTTTAAATTAGGAatattggaaa                                                             >  8:812118/1‑134 (MQ=11)
           tgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTGTATTTTTTATACTCTGTCGTTTTTTTTTTTAAGTGGGATATTGTatgt                                                            >  7:1104731/1‑137 (MQ=11)
            gtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATATGGAATATTGTAAGaa                                                           >  8:14657/1‑139 (MQ=12)
             tttttATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATTATATGGTATATTGTAATAC‑a                                                         >  6:549364/1‑140 (MQ=11)
             tttttATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTATTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTAATATTGAATATTGttataaa                                                          >  5:99003/1‑134 (MQ=11)
                 tataTTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTAATATGGAATATTGTAATAC‑aaaaa                                                     >  5:740540/1‑140 (MQ=11)
                  atatTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTGTTTTATAATATGGAATATTGTAAGAC‑AAAAat                                                    >  6:1069623/1‑140 (MQ=255)
                     tttGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTAATCTTGTATATTGTAAGAA‑AAAAatttt                                                 >  4:846550/1‑138 (MQ=11)
                     tttGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAattat                                                 <  2:1100224/140‑1 (MQ=32)
                     tttGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATGTGTAAAAAGTTAAAAC‑aaaaaatta                                                 >  7:833252/1‑136 (MQ=11)
                     tttGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATTATCGGGAATATGGTAAGAC‑AAAAattat                                                 >  6:325417/1‑140 (MQ=255)
                     tttGGATTGGCTTTTGATCATAATCGTAAACCAATTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATGAGGAATTTTGTAATAA‑AAAAatttt                                                 >  2:737197/1‑138 (MQ=11)
                     tttGGATTGGATTTTGATCATAATCGTACTCCACTTGTTACGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTATTCTGTAATATGGTAAGAC‑AAAAattat                                                 <  4:941438/140‑1 (MQ=11)
                       tGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTGTTTTTATAATAGGGAATATGGTAAGAC‑CAAAATTAttt                                               >  4:468416/1‑140 (MQ=11)
                        ggATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTAtttt                                              <  4:470219/140‑1 (MQ=32)
                          aTTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGGTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATATTCTGGAATATGGTTAGACAAAAAATTAttttt                                             >  2:808321/1‑140 (MQ=11)
                             ggCTTTTGATCATAATCGTAATCCACTTGTTAAGAGTTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATATGGTATATGGGTTTAC‑AAAAAATATTTTTTTat                                         >  2:505711/1‑139 (MQ=11)
                              gCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTAATATGGAATATGGTTAGAC‑AAAAAATATTTTTTTaat                                        >  5:563482/1‑139 (MQ=11)
                              gCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTTATAAGGTATATGGTAAGAC‑AAAAAATtttttttttag                                        >  2:824550/1‑135 (MQ=11)
                               cTTTTGATCATAATCGTTTTCCTCTTGTTATGAATTTCTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATGTGGTATATGGTAAGAC‑AAAAATTATTTTTGTAtga                                       <  3:1004837/140‑1 (MQ=11)
                               cTTTTGATCATAATCGTAATCCACTTGTTAACAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGTATATGGTAAGAC‑AAAAATTATTTTTGTAaga                                       <  8:1017754/140‑1 (MQ=17)
                                   tGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATCTGGTATATTGGAACAC‑AAAAAATATTTTTTTTATAGAGc                                   >  3:469673/1‑140 (MQ=11)
                                   tGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATATTGAATATTGTTAGAC‑AAAAAATATTTTTTTTAGAGAGc                                   >  3:1048405/1‑140 (MQ=11)
                                            tCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATTGTTTTTAGGTGTTGTTTTATTATTTATACACTGTCGTGTTTTTTATAAACTGGCATATGGTTTTAC‑AAAAATTAATTTTTTTATAGAGCgttttttaa                          >  6:1025632/1‑138 (MQ=11)
                                                aaTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCt                      <  7:96754/140‑1 (MQ=32)
                                                aaTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCt                      <  1:119592/140‑1 (MQ=32)
                                                aaTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTTATAGATCTTTTTTTAAAcaa                      >  6:408188/1‑138 (MQ=11)
                                                 aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTAATATGGTATATGGTTAGAC‑AAAAATTATTTTTGTAAGAGAGGTTTTTTTaaaacaa                     >  6:818608/1‑136 (MQ=11)
                                                 aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTGTTTTTTAAATGAGGAATATTGTAAGCC‑AAAAATTTTTTTTTTTTAAGCGGTTTTTTTTAAccca                     >  6:517233/1‑138 (MQ=11)
                                                 aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTTATATGGTAAATGGTTAGTC‑AAAAATTATTTTTTTTATAGTGGGTTTTTTTAAACTa                     >  5:15595/1‑140 (MQ=11)
                                                 aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATATGGAATATGTTAAGAC‑AAAAATTATTTTTTTAATAGCGCTTTTTTTAAACCTa                     >  6:529431/1‑140 (MQ=11)
                                                    cACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGGGTTTTTTTTTATAGTGTATATTGTAATAA‑AAAAATTATTTTTTTAATATAGGTTTTTTTTAAACAaaaa                  >  5:1140199/1‑140 (MQ=2)
                                                      cTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAAAATGGAATATTGTAATAA‑AAAAATTATTTTTGTAATAGAGCTGTTTTTAAAACaaaaaaa                >  5:514429/1‑139 (MQ=11)
                                                      cTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATAAACTGTCGTTTTTTTTGTTATAAGGAATATGGTTATAC‑AAAAATTATTTTTGTAATATTGATTTTTTTGAACCTAAAAAt                >  8:746162/1‑140 (MQ=11)
                                                       ttGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTAATGAGGAATTTTGTAATAC‑AAAAATTAATTTTTTAAGAAACCTTTTTTTTAACCTAAAAATa               >  2:241051/1‑140 (MQ=11)
                                                       ttGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTTATGTGGTATATGGTTATAC‑AAAAAATATTTTTGTTAGAGTGCTTTTTTTAAAACAAAAAATa               >  5:834113/1‑140 (MQ=11)
                                                       ttGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAAAAAGGTATATTGTTAGAA‑AAAAAATATTTTTTGTAGAGCTCGTTTTTTGAACCCAAAAATa               >  8:506161/1‑140 (MQ=2)
                                                          ttAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTAATATGGAATATTGTGAGTC‑AAAAAATATTTTTGTAATAGATCTTTTTTTAAACCAAAAAATaaaa            >  2:1304973/1‑140 (MQ=11)
                                                          ttAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGGTTTTTTGTATCATGATTATTTTTAGAC‑AAAAATTAATTTTTTAAAAGAGCTTTTTTTATAACAaaaaaaaaaa            >  7:177753/1‑140 (MQ=2)
                                                            tataaTTACTTGATCTATATAGTATGGTTTTTAGGTGTTTTTTTATTTTTTATACACTTTATGTTTTTTTCTAATCTTGAATATGGTAAGAA‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACt          <  3:224092/137‑1 (MQ=11)
                                                            aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACt          <  1:968875/140‑1 (MQ=32)
                                                            aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACt          <  1:744761/140‑1 (MQ=32)
                                                            aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACt          <  6:194028/140‑1 (MQ=32)
                                                            aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACt          <  4:27433/140‑1 (MQ=32)
                                                            aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACt          <  2:304649/140‑1 (MQ=32)
                                                            aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACt          <  2:1056477/140‑1 (MQ=32)
                                                            aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATATGGAATATTGTAAGAC‑AAAAATTATTTTTTTTATTGAGGATTTTTTAAACaaaaaaaaaaaaaa          >  5:1267502/1‑138 (MQ=11)
                                                                 ttACTTGATCGATATAGTATGGTTTTTATGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGt     <  1:969270/140‑1 (MQ=17)
                                                                 ttACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTAATCTGGTATATGGGAAGAC‑CAAAATTTTTTTTGTATGAGAGCTTTTTTTGAACCTAAAAATAAAACTAAGGt     >  8:983008/1‑140 (MQ=11)
                                                                 ttACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTTATAGAGCTTTTTTTAAAACTAAAAATAAAACTAAGGt     >  4:689659/1‑140 (MQ=11)
                                                                 ttACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATTATGTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGATCGCTTTTTTTGAACCAAAAAAAAAAAAAAAGGt     >  8:608364/1‑140 (MQ=11)
                                                                    cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTTTTATGGAATATGGTTATAC‑AAAAATTTTTTTTTTTTGAGAGCTTTTTTTGAAACTAAAAAAAAAAAAAAAGTTaa  >  5:681162/1‑140 (MQ=11)
                                                                    cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTaa  <  7:277071/140‑1 (MQ=32)
                                                                    cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTaa  <  7:247879/140‑1 (MQ=32)
                                                                    cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTaa  <  6:342672/140‑1 (MQ=32)
                                                                    cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTAATATGTGGTATATTGTTATAC‑AAAAAATAATTTTTTAAGTGAGATTTTTTTAAAACAAAAAATTAAAAAAAAGTTaa  >  5:610413/1‑140 (MQ=2)
                                                                    cTTGATCGATATAGTATGGTATTTAGGTGTTGTATTATTTTTTATACACTGTCGTATTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTaa  <  2:183360/140‑1 (MQ=12)
                                                                    attGATCGATATAGTATTGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATTGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTaa  <  2:1141887/139‑1 (MQ=12)
                                                                                                                                           |                                                                     
TCGGTTATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGGAATATGGTAAGAC‑AAAAATTATTTTTGTAAGAGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTAA  >  NZ_CP022686/4615568‑4615775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A