Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F2 I207 R1
|
218 |
45.0 |
2482936 |
97.1% |
2410930 |
86.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
3,624,386 |
T→C |
E522G (GAA→GGA) |
yhiJ ← |
YhiJ/YhiL family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 3,624,386 | 0 | T | C | 98.8%
| 277.6
/ ‑5.4
| 81 | E522G (GAA→GGA) | yhiJ | YhiJ/YhiL family protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (50/30); total (51/30) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTTCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCA > NZ_CP009273/3624299‑3624472
|
gTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCa > 2:465490/1‑90 (MQ=255)
gTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCa > 1:604698/1‑90 (MQ=255)
aaCATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑Tg > 1:1002063/1‑90 (MQ=255)
aaCATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑Tg > 2:1053810/1‑90 (MQ=255)
aCATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGc < 1:1039498/90‑1 (MQ=255)
aaTATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTa < 1:53846/90‑1 (MQ=255)
tatTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAg < 1:1098539/90‑1 (MQ=255)
ttCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGAc < 1:1056122/90‑1 (MQ=255)
tCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTTCATTGCTGGGAAGAc > 2:629774/1‑90 (MQ=255)
cATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAg > 2:2791/1‑86 (MQ=255)
cATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAg < 1:2791/86‑1 (MQ=255)
cATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACtt > 2:1048651/1‑90 (MQ=255)
cATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACtt > 2:464703/1‑90 (MQ=255)
gtCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAggg > 2:1070010/1‑90 (MQ=255)
cTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAg > 2:578921/1‑90 (MQ=255)
cTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAg < 1:398397/90‑1 (MQ=255)
ggTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAGGGCATAAGTCGATTTCTGATTTTTCCA‑TGCCGGTAAGGCTTCAAGGGAGTGGt > 1:77913/1‑90 (MQ=255)
ggTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGt < 2:756116/90‑1 (MQ=255)
gTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAGGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGtt < 2:771561/90‑1 (MQ=255)
gTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGtt < 1:739347/90‑1 (MQ=255)
ttCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTa < 1:983920/90‑1 (MQ=255)
tCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTAt > 2:54087/1‑90 (MQ=255)
gagCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑Tg > 1:785446/1‑60 (MQ=255)
gagCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑Tg < 2:785446/60‑1 (MQ=255)
gagCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTAtctc > 2:546586/1‑90 (MQ=255)
gagCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTAtctc > 1:69244/1‑90 (MQ=255)
gagCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTAtctc > 2:102058/1‑90 (MQ=255)
gagCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTAtctc > 1:360811/1‑90 (MQ=255)
gagCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTAtctc > 1:454926/1‑90 (MQ=255)
tGTTACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTTTTTTTTCCA‑ATCTGGTAAGGCTTCCAGGGAGTGGTTATCTCAGGc < 1:464703/90‑1 (MQ=255)
tGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGc < 1:1238978/90‑1 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAg > 1:670348/1‑75 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAg < 2:670348/75‑1 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGtt > 2:89310/1‑80 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGt < 1:410453/79‑1 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGt > 2:410453/1‑79 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTa < 1:1074068/81‑1 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTa > 2:1074068/1‑81 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGcc > 2:853433/1‑90 (MQ=255)
gTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGcc > 1:544094/1‑90 (MQ=255)
gTAACATTGTGCCCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCCGGTAAGACTTCCAGGGAGTGGtt < 1:89310/80‑1 (MQ=255)
tAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGccc < 2:1209206/90‑1 (MQ=255)
aTTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCa < 2:465476/48‑1 (MQ=255)
aTTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCa > 2:905314/1‑90 (MQ=255)
aTTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCa > 1:1069744/1‑90 (MQ=255)
ttGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAc > 2:518078/1‑90 (MQ=255)
ttGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAc < 1:1037350/90‑1 (MQ=255)
ttGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAc < 2:174217/90‑1 (MQ=255)
ttGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAc > 1:635019/1‑90 (MQ=255)
tgtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAggg < 2:1219907/66‑1 (MQ=255)
tgtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAggg > 1:1219907/1‑66 (MQ=255)
tgtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAcc > 2:149389/1‑90 (MQ=255)
tgtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAcc < 1:927842/90‑1 (MQ=255)
tgtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAcc > 2:897516/1‑90 (MQ=255)
gtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCa > 2:453340/1‑90 (MQ=255)
gtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCa > 2:912420/1‑90 (MQ=255)
gtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCa > 2:78407/1‑90 (MQ=255)
gtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCa > 2:507050/1‑90 (MQ=255)
gtgCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCa > 1:561633/1‑90 (MQ=255)
gcgcCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAggg > 1:619751/1‑63 (MQ=255)
gcgcCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAggg < 2:619751/63‑1 (MQ=255)
gcgcCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAgg > 2:204140/1‑90 (MQ=255)
gcgcCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAgg > 1:347835/1‑90 (MQ=255)
gcgcCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAgg > 2:624356/1‑90 (MQ=255)
gcgcCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAgg > 2:525763/1‑90 (MQ=255)
ttCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTaa > 2:1134850/1‑90 (MQ=255)
aaGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAg < 2:978218/51‑1 (MQ=255)
aaGGCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAg > 1:978218/1‑51 (MQ=255)
gCATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTat > 2:620050/1‑90 (MQ=255)
cATAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTatg < 1:373048/90‑1 (MQ=255)
aTAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGc < 1:499416/65‑1 (MQ=255)
aTAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGc > 2:499416/1‑65 (MQ=255)
aTAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTatgc > 2:768111/1‑90 (MQ=255)
aTAAGTCCATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTatgc > 1:212333/1‑90 (MQ=255)
cATTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGa < 1:26525/90‑1 (MQ=255)
aTTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTatg < 2:1219038/81‑1 (MQ=255)
aTTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTatg > 1:1219038/1‑81 (MQ=255)
aTTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGaa > 1:666472/1‑90 (MQ=255)
aTTTCTGTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGaa > 2:222901/1‑90 (MQ=255)
gTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAcc < 1:802983/54‑1 (MQ=255)
gTTTTTTCCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAcc > 2:802983/1‑54 (MQ=255)
ttttttcCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACAttctt < 1:507050/90‑1 (MQ=255)
tttcCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCa < 2:778047/90‑1 (MQ=255)
tttcCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCa < 1:825264/90‑1 (MQ=255)
tttcCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCa < 2:604369/90‑1 (MQ=255)
|
GTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTTCA‑TGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCA > NZ_CP009273/3624299‑3624472
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAACCAGATAGTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTTCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGT > NZ_CP009273/3624289‑3624485
|
CAACCAGATAGTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCA > SRR3722089.612172/1‑100 (MQ=60)
ACCAGATAGTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATG > SRR3722089.1016963/1‑100 (MQ=60)
TAGTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTA < SRR3722089.15608/100‑1 (MQ=60)
ACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACT < SRR3722089.1055056/100‑1 (MQ=60)
AATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAG < SRR3722089.54515/100‑1 (MQ=60)
TATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGG < SRR3722089.1115133/100‑1 (MQ=60)
TATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGG < SRR3722089.2816/100‑1 (MQ=60)
TTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAG < SRR3722089.1071978/100‑1 (MQ=60)
TGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAGGGCATAAGTCGATTTCTGATTTTTCCATGCCGGTAAGGCTTCAAGGGAGTGGT > SRR3722089.78866/1‑100 (MQ=60)
CTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACctgtctcttatacacatctg > SRR3722089.796194/1‑80 (MQ=60)
CTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTC > SRR3722089.460372/1‑100 (MQ=60)
CTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTC < SRR3722089.403240/100‑1 (MQ=60)
CTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTC > SRR3722089.365260/1‑100 (MQ=60)
CTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTC > SRR3722089.70080/1‑100 (MQ=60)
GGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGC < SRR3722089.415419/100‑1 (MQ=60)
GTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCctgtc > SRR3722089.679025/1‑95 (MQ=60)
GTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCC > SRR3722089.550428/1‑100 (MQ=60)
GTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCC < SRR3722089.749026/100‑1 (MQ=60)
GTTCAGAGCTGTAACATTGTGCCCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCCGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCC < SRR3722089.90412/100‑1 (MQ=60)
TTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCC < SRR3722089.1090211/100‑1 (MQ=60)
TTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCC < SRR3722089.998507/100‑1 (MQ=60)
GAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGctgtctcttatacacatctgacgctgccgacg > SRR3722089.471039/1‑68 (MQ=60)
GAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCA > SRR3722089.1085808/1‑100 (MQ=60)
AGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCAC > SRR3722089.643103/1‑100 (MQ=60)
GCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCctgtctcttataca > SRR3722089.1238464/1‑86 (MQ=60)
CTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCA > SRR3722089.568198/1‑100 (MQ=60)
TGTTACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTTTTTTTTCCAATCTGGTAAGGCTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAG < SRR3722089.470253/100‑1 (MQ=60)
TGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAG < SRR3722089.1257829/100‑1 (MQ=60)
GTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCctgtctcttatacacat > SRR3722089.627533/1‑83 (MQ=60)
GTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGG > SRR3722089.352158/1‑100 (MQ=60)
gtgtataagagacagAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTA < SRR3722089.505324/85‑1 (MQ=60)
TTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAAT < SRR3722089.1052870/100‑1 (MQ=60)
cagcgtcagatgtgtataagagacagGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATT < SRR3722089.814129/74‑1 (MQ=60)
TGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATT < SRR3722089.941380/100‑1 (MQ=60)
CTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCctgtctcttatacacatctgacgctgccg > SRR3722089.992688/1‑71 (MQ=60)
AATCAAAGGCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGC > SRR3722089.215011/1‑100 (MQ=60)
GCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAA > SRR3722089.675082/1‑100 (MQ=60)
GCATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAA > SRR3722089.1237582/1‑100 (MQ=60)
CATAAGTCCATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAAC < SRR3722089.377622/100‑1 (MQ=60)
CATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGtctcttatacacatctgacgctgccgacgaccatcttagtgta > SRR3722089.871165/1‑57 (MQ=60)
CATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCC < SRR3722089.26846/100‑1 (MQ=60)
ATTTCTGTTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCA > SRR3722089.1137982/1‑100 (MQ=60)
TTTTTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTT < SRR3722089.513030/100‑1 (MQ=60)
TTTCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTAC < SRR3722089.836895/100‑1 (MQ=60)
TCCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTG < SRR3722089.627848/100‑1 (MQ=60)
CCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGT < SRR3722089.363706/100‑1 (MQ=60)
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CAACCAGATAGTAACATTAATATTCATGTTGTCTATGGTTCAGAGCTGTAACATTGTGCGCCTTCTAATCAAAGGCATAAGTCCATTTCTGTTTTTTTCATGCTGGTAAGACTTCCAGGGAGTGGTTATCTCAGGCCCTGCACCAGGGTTAATTTGGCAATTATGCATGCTGAACATTCTTCCAGCATGTTTACTGT > NZ_CP009273/3624289‑3624485
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
