Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,615,370 C→A 14.5% S272Y (TCT→TAT)  purM → phosphoribosylaminoimidazole synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,615,3700CA14.5% 998.6 / 93.1 298S272Y (TCT→TAT) purMphosphoribosylaminoimidazole synthetase
Reads supporting (aligned to +/- strand):  ref base C (140/114);  new base A (25/19);  total (165/133)
Fisher's exact test for biased strand distribution p-value = 8.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 301 total aligned reads displayed.

GCTGGCACCGACCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTCGCCCTGCTCAATG  >  CP009273/2615221‑2615519
                                                                                                                                                     |                                                                                                                                                     
  tgGCACCGACCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCtt                                                                                                                                                     >  1:4125590/1‑150 (MQ=255)
   ggCACCGACCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTc                                                                                                                                                    >  1:1283181/1‑150 (MQ=255)
    gCACCGACCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTcc                                                                                                                                                   >  2:2803189/1‑150 (MQ=255)
      aCCGACCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTg                                                                                                                                                 >  2:3524142/1‑150 (MQ=255)
         gACCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCa                                                                                                                                              <  1:1640022/150‑1 (MQ=255)
          aCCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAg                                                                                                                                             >  1:4000955/1‑150 (MQ=255)
            ccGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTg                                                                                                                                           <  2:2329471/150‑1 (MQ=255)
            ccGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTg                                                                                                                                           <  2:4423096/150‑1 (MQ=255)
            ccGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTg                                                                                                                                           >  2:4341397/1‑150 (MQ=255)
               cATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGcc                                                                                                                                        >  2:4539941/1‑150 (MQ=255)
               cATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGcc                                                                                                                                        >  1:2733716/1‑150 (MQ=255)
                aTTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCNGTGATTGATGAATCTTCCTGGCAGTGGCCg                                                                                                                                       <  1:4285951/150‑1 (MQ=255)
                aTTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCg                                                                                                                                       >  1:2304188/1‑150 (MQ=255)
                   tACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGaa                                                                                                                                    <  2:1062863/150‑1 (MQ=255)
                    aCGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAg                                                                                                                                   >  2:421263/1‑150 (MQ=255)
                    aCGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAg                                                                                                                                   <  1:282301/150‑1 (MQ=255)
                     cGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAgt                                                                                                                                  >  2:4036069/1‑150 (MQ=255)
                       tGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAgtgt                                                                                                                                >  1:1930941/1‑150 (MQ=255)
                         aaGTCAGTGCTTGAGTTGATTGATAAGGTCGATGTGCTTGCCATTGCGCACCTGACCGGCGGCGGCTTATGGGAAAACATTCCGCGAGTAGTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTc                                                                                                                              <  1:4516962/150‑1 (MQ=255)
                          aGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCa                                                                                                                             >  1:2245973/1‑150 (MQ=255)
                           gTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCaa                                                                                                                            >  2:4133977/1‑150 (MQ=255)
                           gTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCaa                                                                                                                            >  1:3976534/1‑150 (MQ=255)
                               gTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTgg                                                                                                                        <  1:3769783/150‑1 (MQ=255)
                                tGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGc                                                                                                                       <  2:2302638/150‑1 (MQ=255)
                                 gCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTAGTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCt                                                                                                                      <  1:3295376/150‑1 (MQ=255)
                                   tGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAACCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGc                                                                                                                    <  1:1468513/150‑1 (MQ=255)
                                      aGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCaaa                                                                                                                 >  2:1534779/1‑150 (MQ=255)
                                        ttgattgaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACg                                                                                                               >  1:1534220/1‑150 (MQ=255)
                                         tgattgaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACgg                                                                                                              >  2:3239993/1‑150 (MQ=255)
                                          gattgaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGc                                                                                                             >  1:3025379/1‑150 (MQ=255)
                                           attgaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCa                                                                                                            >  2:3069781/1‑150 (MQ=255)
                                           attgaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCa                                                                                                            <  1:382512/150‑1 (MQ=255)
                                           attgaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTAGTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCa                                                                                                            <  1:2238006/150‑1 (MQ=255)
                                            ttgaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAg                                                                                                           >  1:2301035/1‑150 (MQ=255)
                                              gaAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGt                                                                                                         >  2:3753643/1‑150 (MQ=255)
                                                aaaGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTaa                                                                                                       >  1:505156/1‑150 (MQ=255)
                                                aaaGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTaa                                                                                                       <  2:745797/150‑1 (MQ=255)
                                                    gTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGtt                                                                                                   >  1:373112/1‑150 (MQ=255)
                                                    gTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGtt                                                                                                   <  2:2448338/150‑1 (MQ=255)
                                                      cGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGa                                                                                                 >  1:1035131/1‑150 (MQ=255)
                                                       gATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAg                                                                                                <  2:1334354/150‑1 (MQ=255)
                                                       gATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAg                                                                                                >  2:731059/1‑150 (MQ=255)
                                                       gATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAg                                                                                                >  1:4421712/1‑150 (MQ=255)
                                                       gATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAg                                                                                                >  1:3058550/1‑150 (MQ=255)
                                                        aTGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGc                                                                                               >  1:370025/1‑150 (MQ=255)
                                                          gtgCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCAc                                                                                             <  1:3193693/150‑1 (MQ=255)
                                                            gCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCa                                                                                           >  1:2350545/1‑150 (MQ=255)
                                                                  cATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAAt                                                                                     >  1:2141040/1‑150 (MQ=255)
                                                                   aTTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATACTACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATg                                                                                    <  2:4402698/150‑1 (MQ=255)
                                                                     tGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTa                                                                                  <  2:4327498/150‑1 (MQ=255)
                                                                     tGCGCACCTGACCGGCGGCGGCGTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTa                                                                                  >  2:1614766/1‑150 (MQ=255)
                                                                       cgcACCTGACCGGCGGCGGCTTCTTGGAAATCTGTCCGCGCATATTGCCATATAATTCTAAGTCAGTGATTGATGAATCTTCCTGGCTGTGGCAGGAAGTGTTCAACTGGCTGGAAACGGCATGTAACGTTGAGCACCATTAAATGTATc                                                                                <  2:665881/150‑1 (MQ=255)
                                                                       cgcACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATc                                                                                >  2:2118064/1‑150 (MQ=255)
                                                                         cACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGc                                                                              <  2:168790/150‑1 (MQ=255)
                                                                             tGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTTATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCt                                                                          <  1:259006/150‑1 (MQ=255)
                                                                             tGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTTCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATAGCACCt                                                                          >  1:2103567/1‑150 (MQ=255)
                                                                             tGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCt                                                                          >  2:1683096/1‑150 (MQ=255)
                                                                             tGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCt                                                                          <  2:3380476/150‑1 (MQ=255)
                                                                              gACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCtt                                                                         <  1:2345436/150‑1 (MQ=255)
                                                                                 cggcggcggCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCaa                                                                      >  1:3917247/1‑150 (MQ=255)
                                                                                 cggcggcggCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCaa                                                                      <  2:4608062/150‑1 (MQ=255)
                                                                                    cggcggcTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTg                                                                   <  1:952791/150‑1 (MQ=255)
                                                                                           ttCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGACTCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTc                                                            <  1:2496125/150‑1 (MQ=255)
                                                                                           ttCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTc                                                            <  1:2025039/150‑1 (MQ=255)
                                                                                            tCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCg                                                           <  1:1572176/150‑1 (MQ=255)
                                                                                              tGGGAAAACATTCCGCGCGTAGTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCggg                                                         <  1:69363/150‑1 (MQ=255)
                                                                                                ggAAAACATTCCGCGCATATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGgat                                                       <  2:2597242/150‑1 (MQ=255)
                                                                                                  aaaaCATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGgatga                                                     >  1:267966/1‑150 (MQ=255)
                                                                                                     aCATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGatta                                                  >  1:1332624/1‑150 (MQ=255)
                                                                                                       aTTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGattatt                                                >  2:1302352/1‑150 (MQ=255)
                                                                                                           cgcgcgTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGccc                                            >  1:1476834/1‑150 (MQ=255)
                                                                                                            gcgcgTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCcct                                           >  2:1375410/1‑150 (MQ=255)
                                                                                                             cgcgTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCcctg                                          >  1:463290/1‑150 (MQ=255)
                                                                                                             cgcgTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCcctg                                          >  1:4531220/1‑150 (MQ=255)
                                                                                                                gTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCcctgcct                                       >  2:3903471/1‑150 (MQ=255)
                                                                                                                gTAGTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCcctgcct                                       <  1:2951256/150‑1 (MQ=255)
                                                                                                                 tATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCcctgcctg                                      >  1:883824/1‑150 (MQ=255)
                                                                                                                 tATTGCCAGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCcctgcctg                                      <  2:1558928/150‑1 (MQ=255)
                                                                                                                        aGATAATACTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGa                               >  2:1213715/1‑150 (MQ=255)
                                                                                                                         gATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGAAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATAATTGCCCTGCCTGCTCCGGaa                              >  2:2731067/1‑150 (MQ=255)
                                                                                                                            aataCTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTg                           >  1:4351514/1‑150 (MQ=255)
                                                                                                                            aataCTCAGGCAGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTg                           >  1:3965001/1‑150 (MQ=255)
                                                                                                                             ataCTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTgg                          <  2:1936187/150‑1 (MQ=255)
                                                                                                                                  cAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACaaa                     >  2:3231701/1‑150 (MQ=255)
                                                                                                                                   aGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAg                    >  1:54817/1‑150 (MQ=255)
                                                                                                                                    ggCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGc                   <  2:3953447/150‑1 (MQ=255)
                                                                                                                                    ggCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGc                   <  2:19202/150‑1 (MQ=255)
                                                                                                                                    ggCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGc                   <  1:3993788/150‑1 (MQ=255)
                                                                                                                                     gCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGcc                  <  2:4125590/150‑1 (MQ=255)
                                                                                                                                     gCAGTGATTGATGAATCGTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGcc                  <  2:3011222/150‑1 (MQ=255)
                                                                                                                                       aGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCt                >  2:491146/1‑150 (MQ=255)
                                                                                                                                       aGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCt                >  1:3247771/1‑150 (MQ=255)
                                                                                                                                       aGTGATTGATGAATATTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCt                <  2:293908/150‑1 (MQ=255)
                                                                                                                                        gTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTc               >  2:3810742/1‑150 (MQ=255)
                                                                                                                                        gTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTc               <  2:3724820/150‑1 (MQ=255)
                                                                                                                                             tgatgaATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTCGCCCt          <  1:935730/150‑1 (MQ=255)
                                                                                                                                             tgatgaATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGAGGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTCGCCCt          >  1:4208306/1‑150 (MQ=255)
                                                                                                                                                tgaATAGTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTCGCCCTGCt       <  1:1718900/150‑1 (MQ=255)
                                                                                                                                                 gaATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTCGCCCTGCTc      <  1:3542685/150‑1 (MQ=255)
                                                                                                                                                   aTCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTCGCCCTGCTCaa    >  1:1048134/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GCTGGCACCGACCCGCATTTACGTGAAGTCAGTGCTGGAGTTGATTGAAAAGGTCGATGTGCATGCCATTGCGCACCTGACCGGCGGCGGCTTCTGGGAAAACATTCCGCGCGTATTGCCAGATAATACTCAGGCAGTGATTGATGAATCTTCCTGGCAGTGGCCGGAAGTGTTCAACTGGCTGCAAACGGCAGGTAACGTTGAGCACCATGAAATGTATCGCACCTTCAACTGCGGCGTCGGGATGATTATTGCCCTGCCTGCTCCGGAAGTGGACAAAGCCCTCGCCCTGCTCAATG  >  CP009273/2615221‑2615519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A