Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,690,778 C→A 33.9% D147Y (GAC→TAC)  tadA ← tRNA‑specific adenosine deaminase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,690,7780CA33.9% 473.5 / 239.0 262D147Y (GAC→TAC) tadAtRNA‑specific adenosine deaminase
Reads supporting (aligned to +/- strand):  ref base C (96/77);  new base A (47/42);  total (143/119)
Fisher's exact test for biased strand distribution p-value = 6.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 265 total aligned reads displayed.

GTTTCTTTCCCAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAATGCGAC  >  CP009273/2690629‑2690927
                                                                                                                                                     |                                                                                                                                                     
  ttctttcCCAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCAc                                                                                                                                                     >  2:1907510/1‑150 (MQ=255)
   tctttcCCAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACt                                                                                                                                                    <  2:3726208/150‑1 (MQ=255)
     tttcCCAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAATAGAAACATAATTAATCCTTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGa                                                                                                                                                  <  1:365897/150‑1 (MQ=255)
       tcCCAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGc                                                                                                                                                <  2:1859683/150‑1 (MQ=255)
        cccAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCa                                                                                                                                               <  1:2747648/150‑1 (MQ=255)
          cAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAAc                                                                                                                                             <  1:3398853/150‑1 (MQ=255)
          cAGTCGTCATCAAACTATTTGACACATTCTCCCTATCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATTCGAAAGAAGTCACTGAGCAAc                                                                                                                                             <  1:1834431/150‑1 (MQ=255)
                tcatcaAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCcgcg                                                                                                                                       >  2:2845267/1‑150 (MQ=255)
                  atcaAACTATTTGACCCATTCTCCCTCTCTGCTGTTTACCAGGAAAGGGAGTGAAGAGAAACAAAATAAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACAGAGCAACGCCGCGCa                                                                                                                                     >  2:3909230/1‑150 (MQ=255)
                        cTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATc                                                                                                                               >  1:555651/1‑150 (MQ=255)
                          aTTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCg                                                                                                                             <  2:1465687/150‑1 (MQ=255)
                              gACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAg                                                                                                                         >  2:4223246/1‑150 (MQ=255)
                               aCCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGt                                                                                                                        <  2:2228024/150‑1 (MQ=255)
                                cccATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTa                                                                                                                       >  2:1364003/1‑150 (MQ=255)
                                  cATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTAtt                                                                                                                     <  2:791646/150‑1 (MQ=255)
                                      ctcCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTAttcctt                                                                                                                 >  2:2557087/1‑150 (MQ=255)
                                       tcCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTAttccttc                                                                                                                <  2:354508/150‑1 (MQ=255)
                                       tcCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTAttccttc                                                                                                                >  1:2959805/1‑150 (MQ=255)
                                       tcCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTAttccttc                                                                                                                <  1:2599980/150‑1 (MQ=255)
                                             tctGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAAt                                                                                                          <  1:2015583/150‑1 (MQ=255)
                                                 ctgTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTcc                                                                                                      >  2:3427174/1‑150 (MQ=255)
                                                     tttCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTc                                                                                                  >  1:3976966/1‑150 (MQ=255)
                                                        ccAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGt                                                                                               >  1:2631849/1‑150 (MQ=255)
                                                        ccAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGt                                                                                               >  2:4401532/1‑150 (MQ=255)
                                                        ccAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGt                                                                                               <  2:1508608/150‑1 (MQ=255)
                                                          aGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGa                                                                                             >  2:1006919/1‑150 (MQ=255)
                                                            gAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGAtt                                                                                           >  1:3187230/1‑150 (MQ=255)
                                                              aaGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCa                                                                                         <  1:4516029/150‑1 (MQ=255)
                                                              aaGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCa                                                                                         <  1:1001572/150‑1 (MQ=255)
                                                                gggAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACCCGGTGAGTCATa                                                                                       >  1:1847377/1‑150 (MQ=255)
                                                                   aGTGAAGAGAAACAAAAATAATCCGTAGAGGATTGCTCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGACAGTATTCCTACCTTAATTTCCACTCGGTGATTCATAccc                                                                                    >  2:2924898/1‑150 (MQ=255)
                                                                    gTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCg                                                                                   <  1:3044013/150‑1 (MQ=255)
                                                                    gTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCg                                                                                   <  1:4168194/150‑1 (MQ=255)
                                                                        agagAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGgatg                                                                               <  2:3056584/150‑1 (MQ=255)
                                                                        agagAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGgatg                                                                               <  1:4469759/150‑1 (MQ=255)
                                                                          agaAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGgatgat                                                                             <  1:1386638/150‑1 (MQ=255)
                                                                          agaAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGgatgat                                                                             >  1:612980/1‑150 (MQ=255)
                                                                           gaAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGatgatg                                                                            <  1:1256194/150‑1 (MQ=255)
                                                                           gaAACAAAATTAATCCGTCGAGGAAAGCGCTTTATTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGatgatg                                                                            >  2:1923915/1‑150 (MQ=255)
                                                                            aaaCAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATgc                                                                           >  2:2170967/1‑150 (MQ=255)
                                                                                 aaaTTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGcac                                                                      >  2:1538934/1‑150 (MQ=255)
                                                                                  aaTTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGcaca                                                                     >  1:4528574/1‑150 (MQ=255)
                                                                                  aaTTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGcaca                                                                     >  1:1451661/1‑150 (MQ=255)
                                                                                     tAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATcc                                                                  >  2:3794085/1‑150 (MQ=255)
                                                                                      aaTCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCa                                                                 >  1:2505158/1‑150 (MQ=255)
                                                                                      aaTCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCa                                                                 >  1:803951/1‑150 (MQ=255)
                                                                                      aaTCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCa                                                                 >  1:1695062/1‑150 (MQ=255)
                                                                                       aTCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCAt                                                                >  2:1597648/1‑150 (MQ=255)
                                                                                       aTCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGcaca                                                                     <  2:23428/145‑1 (MQ=255)
                                                                                       aTCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGcaca                                                                     >  1:23428/1‑145 (MQ=255)
                                                                                       aTCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCAt                                                                <  2:1725791/150‑1 (MQ=255)
                                                                                        tCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCAtt                                                               <  1:4054965/150‑1 (MQ=255)
                                                                                            tCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAg                                                           <  2:4530709/150‑1 (MQ=255)
                                                                                             cGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGa                                                          <  2:3188760/150‑1 (MQ=255)
                                                                                             cGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGa                                                          <  2:2439990/150‑1 (MQ=255)
                                                                                              gAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGAt                                                         >  2:4041583/1‑150 (MQ=255)
                                                                                              gAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGAt                                                         <  2:1872815/150‑1 (MQ=255)
                                                                                              gAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGAt                                                         >  2:1948567/1‑150 (MQ=255)
                                                                                              gAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGAt                                                         <  2:2489377/150‑1 (MQ=255)
                                                                                               aGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATc                                                        <  1:2274381/150‑1 (MQ=255)
                                                                                               aGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATc                                                        >  2:2270901/1‑150 (MQ=255)
                                                                                                  aTTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCg                                                     <  1:4431562/150‑1 (MQ=255)
                                                                                                    tGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCa                                                   >  2:89966/1‑150 (MQ=255)
                                                                                                      cgcTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAgc                                                 >  1:1145374/1‑150 (MQ=255)
                                                                                                            tttCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGt                                           <  2:218183/150‑1 (MQ=255)
                                                                                                            tttCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGt                                           >  1:129016/1‑150 (MQ=255)
                                                                                                            tttCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGt                                           >  1:3139142/1‑150 (MQ=255)
                                                                                                               cTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGtttt                                        <  1:3073410/150‑1 (MQ=255)
                                                                                                                tGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTc                                       <  1:2125983/150‑1 (MQ=255)
                                                                                                                tGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTc                                       <  1:2010901/150‑1 (MQ=255)
                                                                                                                 gcgcTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTcg                                      >  2:2938339/1‑150 (MQ=255)
                                                                                                                  cgcTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTcgc                                     >  1:742720/1‑150 (MQ=255)
                                                                                                                        aaTTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCAcg                               >  1:2431596/1‑150 (MQ=255)
                                                                                                                        aaTTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCAcg                               <  2:3676782/150‑1 (MQ=255)
                                                                                                                        aaTTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCAcg                               >  2:3111827/1‑150 (MQ=255)
                                                                                                                        aaTTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCAcg                               <  2:688696/150‑1 (MQ=255)
                                                                                                                        aaTTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCAcg                               <  1:1050653/150‑1 (MQ=255)
                                                                                                                          tttCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCAcgcg                             <  2:421956/150‑1 (MQ=255)
                                                                                                                            tCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCa                           >  2:337764/1‑150 (MQ=255)
                                                                                                                             ccTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCAc                          >  2:391790/1‑150 (MQ=255)
                                                                                                                             ccTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCAc                          >  2:3450993/1‑150 (MQ=255)
                                                                                                                               tGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCa                        <  1:1296923/150‑1 (MQ=255)
                                                                                                                               tGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCa                        <  1:3637139/150‑1 (MQ=255)
                                                                                                                               tGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCa                        <  2:1422053/150‑1 (MQ=255)
                                                                                                                               tGGCGGCGCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCa                        <  1:2897592/150‑1 (MQ=255)
                                                                                                                                  cggcgCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAg                     >  1:2860904/1‑150 (MQ=255)
                                                                                                                                  cggcgCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAg                     <  1:1905731/150‑1 (MQ=255)
                                                                                                                                  cggcgCATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAg                     >  1:1502677/1‑150 (MQ=255)
                                                                                                                                     cgcATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGAcc                  >  1:239277/1‑150 (MQ=255)
                                                                                                                                     cgcATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGAcc                  >  2:2699777/1‑150 (MQ=255)
                                                                                                                                      gcATGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCa                 >  1:1089379/1‑150 (MQ=255)
                                                                                                                                       cATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCAc                >  1:91597/1‑150 (MQ=255)
                                                                                                                                        aTGCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCAcg               <  2:4227200/150‑1 (MQ=255)
                                                                                                                                          gCGAAAGAAGTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCAcgcg             <  2:3347213/150‑1 (MQ=255)
                                                                                                                                                gaagTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAAt       >  1:4345937/1‑150 (MQ=255)
                                                                                                                                                gaagTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAAt       <  2:3601724/150‑1 (MQ=255)
                                                                                                                                                 aagTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAATg      >  2:4143549/1‑150 (MQ=255)
                                                                                                                                                  agTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAATGc     <  1:3565147/150‑1 (MQ=255)
                                                                                                                                                  agTAACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAATGc     >  2:2265712/1‑150 (MQ=255)
                                                                                                                                                   gTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAATGCg    >  2:356485/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GTTTCTTTCCCAGTCGTCATCAAACTATTTGACCCATTCTCCCTCTCTGCTGTTTTCCAGGAAAGGGAGTGAAGAGAAACAAAATTAATCCGTCGAGGATTGCGCTTTTTTCTGCGCTTTAATTTCCTGGCGGCGCATGCGAAAGAAGTCACTGAGCAACGCCGCGCACTCATCCGCCAGTATTCCTTCCGTAATTTCCACTCGGTGATTCATACCCGGATGATGCAGCACATCCATTAAAGATCCCGCAGCGCCAGTTTTCGCGTCACGCGCACCAAAGACCACGCGACCAATGCGAC  >  CP009273/2690629‑2690927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A