Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F527 I0 R1 1651 322.4 10661268 95.2% 10149527 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,691,904 T→A 27.8% A2A (GCA→GCT)  pgpC ← phosphatidylglycerophosphatase C, membrane bound

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,691,9040TA27.8% 531.9 / 244.0 313A2A (GCA→GCT) pgpCphosphatidylglycerophosphatase C, membrane bound
Reads supporting (aligned to +/- strand):  ref base T (114/112);  new base A (51/36);  total (165/148)
Fisher's exact test for biased strand distribution p-value = 2.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 318 total aligned reads displayed.

AACGCAATGGCTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCAATGGAATA  >  CP009273/2691755‑2692053
                                                                                                                                                     |                                                                                                                                                     
    cAATGGCTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCa                                                                                                                                                   >  2:429882/1‑150 (MQ=255)
      aTGGCTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCaaa                                                                                                                                                 >  1:552582/1‑150 (MQ=255)
      aTGGCTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCaaa                                                                                                                                                 >  1:977339/1‑150 (MQ=255)
        ggCTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACTTATCCTGCTGATGCAATGTTCCATCTATGTCAAAAAACACCACACGACGCTCGTGAGTTGCCattcc                                                                                                                                               <  2:4860801/150‑5 (MQ=255)
        ggCTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAAcc                                                                                                                                               <  1:2459694/150‑1 (MQ=255)
          cTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCAt                                                                                                                                             <  2:2846036/150‑1 (MQ=255)
           tataATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATa                                                                                                                                            >  2:427196/1‑150 (MQ=255)
           tataATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATa                                                                                                                                            >  2:2387993/1‑150 (MQ=255)
           tataATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATa                                                                                                                                            >  1:2788948/1‑150 (MQ=255)
           gataATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATa                                                                                                                                            >  2:4905344/2‑150 (MQ=255)
                  ggTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCctct                                                                                                                                     <  1:1704977/150‑1 (MQ=255)
                  ggTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCctct                                                                                                                                     <  1:1383238/150‑1 (MQ=255)
                  ggTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCctct                                                                                                                                     <  2:5058118/150‑1 (MQ=255)
                  ggTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCctct                                                                                                                                     >  1:4138749/1‑150 (MQ=255)
                    tAACAACGGCAGGACAAGTAACGCATTCAGCGGTAGGCGACGTAGTAAATAGCGCAGAAAAATGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAATCACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTgg                                                                                                                                   <  2:3529870/150‑1 (MQ=255)
                       caacGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACt                                                                                                                                <  2:582981/150‑1 (MQ=255)
                          ccgCAGGACAAGTCACGCACTCAGCGGCTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACCTAGCCCGCGGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGaa                                                                                                                             <  2:1758106/148‑1 (MQ=255)
                            gCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAAc                                                                                                                           >  2:2308200/1‑150 (MQ=255)
                              aGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACAt                                                                                                                         >  1:4344978/1‑150 (MQ=255)
                              aGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACAt                                                                                                                         <  1:838483/150‑1 (MQ=255)
                              aGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACAt                                                                                                                         >  2:1081253/1‑150 (MQ=255)
                                gACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATCTCCTGCTGATGCAATTTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATcc                                                                                                                       <  1:4557208/150‑1 (MQ=255)
                                gACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATcc                                                                                                                       >  2:3112438/1‑150 (MQ=255)
                                    aGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGAt                                                                                                                   >  1:2434866/1‑150 (MQ=255)
                                    aGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGAt                                                                                                                   <  2:715818/150‑1 (MQ=255)
                                     gTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGAtt                                                                                                                  <  2:217203/150‑1 (MQ=255)
                                         cGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAAtt                                                                                                              <  2:129834/150‑1 (MQ=255)
                                         cGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAAtt                                                                                                              >  1:5224011/1‑150 (MQ=255)
                                         cGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAAtt                                                                                                              >  1:5159955/1‑150 (MQ=255)
                                          gCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAAttt                                                                                                             <  1:2528809/150‑1 (MQ=255)
                                          gCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAAttt                                                                                                             <  2:156011/150‑1 (MQ=255)
                                            aTTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTc                                                                                                           >  1:1487661/1‑150 (MQ=255)
                                              tCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGc                                                                                                         >  2:2676171/1‑150 (MQ=255)
                                                 gCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGctac                                                                                                      <  2:28907/150‑1 (MQ=255)
                                                      tGGAGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACAt                                                                                                 >  2:2044937/1‑150 (MQ=255)
                                                       ggCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATa                                                                                                >  1:122635/1‑150 (MQ=255)
                                                       ggCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATa                                                                                                <  1:3875893/150‑1 (MQ=255)
                                                        gCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAg                                                                                               >  1:66859/1‑150 (MQ=255)
                                                        gCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAg                                                                                               <  1:5266173/150‑1 (MQ=255)
                                                        gCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAg                                                                                               <  2:2794673/150‑1 (MQ=255)
                                                         cGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGc                                                                                              <  2:1925690/150‑1 (MQ=255)
                                                          gACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGcc                                                                                             >  2:3578112/1‑150 (MQ=255)
                                                           aCGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCt                                                                                            <  1:1033831/150‑1 (MQ=255)
                                                             gtagtaAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTaa                                                                                          >  1:332758/1‑150 (MQ=255)
                                                              tagtaAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAAc                                                                                         <  1:1617693/150‑1 (MQ=255)
                                                               agtaAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACa                                                                                        >  1:767506/1‑150 (MQ=255)
                                                                gtaAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACag                                                                                       >  1:3695614/1‑150 (MQ=255)
                                                                gtaAATAGCGCAGAAAACTGCCGAACATATCATGATGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGAGAGTTGCCAAACCAAAAACCACTGGACTGAAACATCCTGATTAATTTTCGCTACTACATATCCTAACag                                                                                       >  1:5096730/1‑150 (MQ=255)
                                                                      aGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACagatagat                                                                                 <  1:2311831/150‑1 (MQ=255)
                                                                         gcAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGatcat                                                                              >  2:2540575/1‑150 (MQ=255)
                                                                         gcAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGatcat                                                                              <  1:4953849/150‑1 (MQ=255)
                                                                         gcAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGatcat                                                                              <  1:4167489/150‑1 (MQ=255)
                                                                         gcAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGatcat                                                                              <  2:2009033/150‑1 (MQ=255)
                                                                          cAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGatcatc                                                                             <  1:1839512/150‑1 (MQ=255)
                                                                          cAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGatcatc                                                                             <  2:4624793/150‑1 (MQ=255)
                                                                           aGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGAtcatca                                                                            >  2:4110226/1‑150 (MQ=255)
                                                                             aaaaCTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACt                                                                          >  1:1298965/1‑150 (MQ=255)
                                                                              aaaCTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACtt                                                                         >  1:3251122/1‑150 (MQ=255)
                                                                                 cTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTc                                                                      >  1:3786232/1‑150 (MQ=255)
                                                                                    ccGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCgg                                                                   >  1:2157194/1‑150 (MQ=255)
                                                                                        aCATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGcaac                                                               <  2:3775905/150‑1 (MQ=255)
                                                                                          atatCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGcaacac                                                             >  2:4410812/1‑149 (MQ=255)
                                                                                          atatCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGcaacaa                                                             >  2:2856059/1‑150 (MQ=255)
                                                                                          atatCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGACTAACAGATAGATCATCACTTTTCCGGcaacaa                                                             >  2:4493692/1‑150 (MQ=255)
                                                                                           tatCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAAt                                                            >  1:3554248/1‑150 (MQ=255)
                                                                                             tCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCg                                                          <  1:4905344/150‑1 (MQ=255)
                                                                                               ctgctgATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCACCAATCGAc                                                        >  1:3161567/1‑150 (MQ=255)
                                                                                                tgctgATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTGTCCGGCAACAATCGAcc                                                       <  2:5326034/150‑1 (MQ=255)
                                                                                                      tGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGcatca                                                 <  1:1280921/150‑1 (MQ=255)
                                                                                                      tGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGcatca                                                 >  1:3469187/1‑150 (MQ=255)
                                                                                                        cAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATg                                               >  2:2057407/1‑150 (MQ=255)
                                                                                                            gTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTa                                           >  2:4798383/1‑150 (MQ=255)
                                                                                                            gTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTa                                           >  2:3284872/1‑150 (MQ=255)
                                                                                                               ccATCTAATAAAAAAAACACCACCCGACGCTGGTGAGTTGCAAAACCATACTCCTCTGTACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACCGATAGATCATCACTTTCCCGGAAACAATCGACCGCATCATGGCTAACt                                        <  1:2353124/150‑1 (MQ=255)
                                                                                                                   cTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGaa                                    >  1:3965365/1‑150 (MQ=255)
                                                                                                                     aaGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAAtt                                  <  1:426618/150‑1 (MQ=255)
                                                                                                                        tCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAAttttt                               <  1:166112/150‑1 (MQ=255)
                                                                                                                           aaaaaCACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAAt                            <  2:1347574/150‑1 (MQ=255)
                                                                                                                            aaaaCACCCCCCGACGCTCGTGAGTAGCCAAACCATACTCATCTGGACTGAAACATCCTTATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAAtt                           <  2:2256718/150‑1 (MQ=255)
                                                                                                                            aaaaCACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAAtt                           >  1:410838/1‑150 (MQ=255)
                                                                                                                            aaaaCACCACACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAAtt                           <  2:225417/150‑1 (MQ=255)
                                                                                                                             aaaCACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTc                          <  2:3723747/150‑1 (MQ=255)
                                                                                                                             aaaCACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCAACACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTc                          <  1:2850884/150‑1 (MQ=255)
                                                                                                                                caccacACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATg                       <  2:3880933/150‑1 (MQ=255)
                                                                                                                                caccacACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATg                       >  2:5288610/1‑150 (MQ=255)
                                                                                                                                 accacACGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATgg                      >  1:2751653/1‑150 (MQ=255)
                                                                                                                                   cacaCGACGCTCGTGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCa                    <  1:4853414/150‑1 (MQ=255)
                                                                                                                                     cccgacgCTCGTGAGTTGCCAAACCATACGCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGAGCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAAt                  <  2:5025670/148‑1 (MQ=255)
                                                                                                                                        gacgCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAg               >  1:5075463/1‑150 (MQ=255)
                                                                                                                                         acgCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGAACATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGc              <  1:3360268/150‑1 (MQ=255)
                                                                                                                                           gCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCgg            >  1:3582925/1‑150 (MQ=255)
                                                                                                                                            ctgttGAGTAGCCAAACCATACTCCTCTGTACTTAAACAACATTTTTAATTTACGCTAATAAATAGCCTAACATATCGAACATCACTTTACCGGAAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGc           <  1:29973/146‑1 (MQ=255)
                                                                                                                                            cTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGc           >  1:2048744/1‑150 (MQ=255)
                                                                                                                                              cGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCaa         >  1:533903/1‑150 (MQ=255)
                                                                                                                                                tGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCAATg       >  2:3983784/1‑150 (MQ=255)
                                                                                                                                                tGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCAATg       <  2:5159812/150‑1 (MQ=255)
                                                                                                                                                tGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCAATg       <  2:5224011/150‑1 (MQ=255)
                                                                                                                                                tGAGTAGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGAAACAAACGACCGCATCATGGATAACTGGAATTTTTAATTCATGGCAATTTGCGGCAATg       >  2:4098805/1‑150 (MQ=255)
                                                                                                                                                 gAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCAATgg      <  1:429882/150‑1 (MQ=255)
                                                                                                                                                     tGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCAATGGAata  <  2:3398673/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AACGCAATGGCTATAATCGGTAACAACGGCAGGACAAGTAACGCATTCAGCGGTTGGCGACGTAGTAAATAGCGCAGAAAACTGCCGAACATATCCTGCTGATGCAATGTTCCATCTAAGTCAAAAAACACCACACGACGCTCGTGAGTTGCCAAACCATACTCCTCTGGACTGAAACATCCTGATTAATTTTCGCTACTACATAGCCTAACAGATAGATCATCACTTTTCCGGCAACAATCGACCGCATCATGGCTAACTGGAATTTTTAATTCATGGCAATTAGCGGCAATGGAATA  >  CP009273/2691755‑2692053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A