Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,741,288 C→A 18.2% intergenic (‑134/‑33) ffh ← / → ypjD Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)/cytochrome c assembly protein family inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,741,2880CA18.2% 812.8 / 115.0 269intergenic (‑134/‑33)ffh/ypjDSignal Recognition Particle (SRP) component with 4.5S RNA (ffs)/cytochrome c assembly protein family inner membrane protein
Reads supporting (aligned to +/- strand):  ref base C (113/107);  new base A (25/24);  total (138/131)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01

Only 100 of 282 total aligned reads displayed.

TTAAATTATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGT  >  CP009273/2741139‑2741436
                                                                                                                                                     |                                                                                                                                                    
  aaaTTATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTtctc                                                                                                                                                    <  2:1787394/150‑1 (MQ=255)
  aaaTTATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTtatc                                                                                                                                                    <  1:1196852/150‑1 (MQ=255)
   aaTTATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTctct                                                                                                                                                   >  1:3226413/1‑150 (MQ=255)
   aaTTATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTctct                                                                                                                                                   <  2:19669/150‑1 (MQ=255)
     ttATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCtcttt                                                                                                                                                 <  1:681602/150‑1 (MQ=255)
      tATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCtctttc                                                                                                                                                >  2:1692387/1‑150 (MQ=255)
       aTCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCtctttct                                                                                                                                               <  2:3213937/150‑1 (MQ=255)
        tCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCtctttctt                                                                                                                                              >  2:1264916/1‑150 (MQ=255)
        tCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCtctttctt                                                                                                                                              >  2:1955238/1‑150 (MQ=255)
         cAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTa                                                                                                                                             >  2:3844058/1‑150 (MQ=255)
          aaaCATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTAt                                                                                                                                            >  2:2362295/1‑150 (MQ=255)
          aaaCATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTAt                                                                                                                                            >  2:2362607/1‑150 (MQ=255)
            aCATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCACTCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTg                                                                                                                                          <  2:3924643/150‑1 (MQ=255)
            aCATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTg                                                                                                                                          >  1:3899034/1‑150 (MQ=255)
              aTTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCt                                                                                                                                        <  1:3071791/150‑1 (MQ=255)
              aTTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCt                                                                                                                                        >  2:3168855/1‑150 (MQ=255)
                tGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCa                                                                                                                                      >  1:3743824/1‑150 (MQ=255)
                tGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCa                                                                                                                                      >  1:2571268/1‑150 (MQ=255)
                  tctctcGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCaaa                                                                                                                                    <  1:4574286/150‑1 (MQ=255)
                   ctctcGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAAc                                                                                                                                   >  1:4459408/1‑150 (MQ=255)
                    tctcGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACt                                                                                                                                  >  2:3391168/1‑150 (MQ=255)
                      tcGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGt                                                                                                                                <  1:4503953/150‑1 (MQ=255)
                       cGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTc                                                                                                                               >  2:1223254/1‑150 (MQ=255)
                       cGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTc                                                                                                                               >  2:3823484/1‑150 (MQ=255)
                        gCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATAAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCg                                                                                                                              <  1:1192822/150‑1 (MQ=255)
                          cTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGAAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGAc                                                                                                                            >  2:2107260/1‑150 (MQ=255)
                               gTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCAc                                                                                                                       <  1:1518579/150‑1 (MQ=255)
                                  gAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTAt                                                                                                                    >  2:86204/1‑150 (MQ=255)
                                   aaaCGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATg                                                                                                                   >  1:354237/1‑150 (MQ=255)
                                     aCGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGcc                                                                                                                 <  2:2615431/150‑1 (MQ=255)
                                       ggTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCg                                                                                                               >  2:4284452/1‑150 (MQ=255)
                                       ggTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCg                                                                                                               >  1:3124745/1‑150 (MQ=255)
                                           ggCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGtttt                                                                                                           <  1:2416475/150‑1 (MQ=255)
                                           ggCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGATCAAACTGTCGACATCACTATGCCCGtttt                                                                                                           <  1:102492/150‑1 (MQ=255)
                                            gCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGttttt                                                                                                          >  1:2309635/1‑150 (MQ=255)
                                            gCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGttttt                                                                                                          <  2:3364523/150‑1 (MQ=255)
                                             ccGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTtg                                                                                                         >  2:3302300/1‑150 (MQ=255)
                                              cGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTtgc                                                                                                        >  1:4411134/1‑150 (MQ=255)
                                                 aaTCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTtgctct                                                                                                     >  1:3370335/1‑150 (MQ=255)
                                                  aTCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTtgctctg                                                                                                    <  1:2748636/150‑1 (MQ=255)
                                                    cgcgACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTtgctctgct                                                                                                  <  2:4352483/150‑1 (MQ=255)
                                                    cgcgACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTtgctctgct                                                                                                  >  2:1385264/1‑150 (MQ=255)
                                                       gACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTcgc                                                                                               >  1:10321/1‑150 (MQ=255)
                                                       gACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTcgc                                                                                               >  1:1351426/1‑150 (MQ=255)
                                                           catcatCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCtt                                                                                           <  1:12150/150‑1 (MQ=255)
                                                           catcatCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTAGTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCtt                                                                                           <  2:3088513/150‑1 (MQ=255)
                                                            atcatcAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTg                                                                                          <  1:2315949/150‑1 (MQ=255)
                                                             tcatcaGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGt                                                                                         >  1:4510060/1‑150 (MQ=255)
                                                                tcaGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGc                                                                                      <  1:563762/150‑1 (MQ=255)
                                                                tcaGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGc                                                                                      >  2:3292041/1‑150 (MQ=255)
                                                                  aGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCt                                                                                    <  1:2864758/150‑1 (MQ=255)
                                                                    tATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTAc                                                                                  >  2:1358345/1‑150 (MQ=255)
                                                                        ttGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCg                                                                              <  1:2501195/150‑1 (MQ=255)
                                                                          gCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTc                                                                            >  1:1837740/1‑150 (MQ=255)
                                                                            cGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAg                                                                          >  2:3677003/1‑150 (MQ=255)
                                                                            cGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAg                                                                          >  1:827001/1‑150 (MQ=255)
                                                                            cGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAg                                                                          >  2:3015018/1‑150 (MQ=255)
                                                                             gCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGt                                                                         >  2:411899/1‑150 (MQ=255)
                                                                              cAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTc                                                                        <  1:1142799/150‑1 (MQ=255)
                                                                                  ataACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTgc                                                                    <  1:2904544/150‑1 (MQ=255)
                                                                                  ataACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTgc                                                                    >  1:3824191/1‑150 (MQ=255)
                                                                                     ccATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTAGTGCTCAACCTGTCGACATCACTAGGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCt                                                                 <  2:245806/149‑1 (MQ=255)
                                                                                      cATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTg                                                                >  2:608633/1‑150 (MQ=255)
                                                                                      cATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTg                                                                >  1:2048597/1‑150 (MQ=255)
                                                                                         gAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGAtt                                                             >  1:2503444/1‑150 (MQ=255)
                                                                                         gAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGAtt                                                             <  2:2650362/150‑1 (MQ=255)
                                                                                         gAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGAtt                                                             >  2:2023841/1‑150 (MQ=255)
                                                                                           aGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCGTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGt                                                           <  1:4193660/150‑1 (MQ=255)
                                                                                              cGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTcc                                                        <  1:1465033/150‑1 (MQ=255)
                                                                                               gTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTccc                                                       <  2:71346/150‑1 (MQ=255)
                                                                                               gTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTccc                                                       >  2:1042458/1‑150 (MQ=255)
                                                                                                tCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCg                                                      >  2:485991/1‑150 (MQ=255)
                                                                                                 cTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCgg                                                     >  1:597362/1‑150 (MQ=255)
                                                                                                  tttGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGt                                                    >  2:283767/1‑150 (MQ=255)
                                                                                                    tgttgtTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTct                                                  <  2:2465169/150‑1 (MQ=255)
                                                                                                    tgttgtTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTct                                                  <  2:4063515/150‑1 (MQ=255)
                                                                                                       tgttATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCTGGTctgct                                               <  1:2621710/150‑1 (MQ=255)
                                                                                                        gttATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTctgctg                                              <  2:4586079/150‑1 (MQ=255)
                                                                                                               aaCGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCaaaaaa                                       >  2:1103435/1‑150 (MQ=255)
                                                                                                               aaCGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCaaaaaa                                       >  2:4228605/1‑150 (MQ=255)
                                                                                                               aaCGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCaaaaaa                                       <  2:1888324/150‑1 (MQ=255)
                                                                                                                 cGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCaaaaaaaa                                     >  1:4241297/1‑149 (MQ=255)
                                                                                                                     tGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAAcggcg                                 >  1:1739996/1‑150 (MQ=255)
                                                                                                                     tGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAAcggcg                                 >  1:1998988/1‑150 (MQ=255)
                                                                                                                      ggAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAAcggcgg                                >  1:2641183/1‑150 (MQ=255)
                                                                                                                        agcagcGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCt                              >  1:2242547/1‑150 (MQ=255)
                                                                                                                         gcagcGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCCGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTg                             >  2:2996864/1‑150 (MQ=255)
                                                                                                                           agcGTTCACCTGACGCTATACTGCTTATCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTggc                           >  2:1491899/1‑150 (MQ=255)
                                                                                                                            gcGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTggcg                          <  2:2257229/150‑1 (MQ=255)
                                                                                                                              gTTCACCTGACGCTATACTGCTTCTCATTCTTAGTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTggcggc                        <  2:3520716/150‑1 (MQ=255)
                                                                                                                                tCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGACAGTCTTGAGCTGATTGTTCCCGGACTGCTGCAAAAAAACGGCGGCTGGCGgcgc                      >  1:331648/1‑150 (MQ=255)
                                                                                                                                   ccTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATg                   <  2:3742858/150‑1 (MQ=255)
                                                                                                                                    cTGACGCTATACTGCTTCTCTTTCTTATTGCTCAACCTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTTATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATgg                  <  1:3300049/150‑1 (MQ=255)
                                                                                                                                      gACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCt                <  2:4469307/150‑1 (MQ=255)
                                                                                                                                      gACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCt                <  1:3431194/150‑1 (MQ=255)
                                                                                                                                      gACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTAGGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCt                <  1:4324153/150‑1 (MQ=255)
                                                                                                                                       aCGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCta               <  2:419226/150‑1 (MQ=255)
                                                                                                                                        cGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCtat              <  1:1106155/150‑1 (MQ=255)
                                                                                                                                           tataCTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCtattat           <  1:421203/150‑1 (MQ=255)
                                                                                                                                                   ttCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCgg   <  1:1044511/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TTAAATTATCAAACATTGTCTCTCGCCTGGGGTGGAAACGGTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGT  >  CP009273/2741139‑2741436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A