Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,790,370 G→T 36.4% I6I (ATC→ATA)  yqaE ← cyaR sRNA‑regulated protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,790,3700GT36.4% 457.1 / 297.5 294I6I (ATC→ATA) yqaEcyaR sRNA‑regulated protein
Reads supporting (aligned to +/- strand):  ref base G (92/95);  new base T (59/48);  total (151/143)
Fisher's exact test for biased strand distribution p-value = 3.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01

Only 100 of 298 total aligned reads displayed.

GCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTGGTATATG  >  CP009273/2790221‑2790519
                                                                                                                                                     |                                                                                                                                                     
     ggTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATtct                                                                                                                                                  <  1:4489247/150‑1 (MQ=255)
     ggTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCAAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATtct                                                                                                                                                  >  2:3234244/1‑150 (MQ=255)
      gTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATtctc                                                                                                                                                 <  2:4192820/150‑1 (MQ=255)
       tttAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTcc                                                                                                                                                >  2:1085889/1‑150 (MQ=255)
        ttAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCa                                                                                                                                               >  2:632953/1‑150 (MQ=255)
        ttAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCa                                                                                                                                               >  1:3155240/1‑150 (MQ=255)
            tCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGaaa                                                                                                                                           <  2:825255/150‑1 (MQ=255)
             cgcgGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAc                                                                                                                                          >  1:1693821/1‑150 (MQ=255)
               cgGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAccc                                                                                                                                        >  1:1316539/1‑150 (MQ=255)
                   tttGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCatat                                                                                                                                    <  2:3508160/150‑1 (MQ=255)
                   tttGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCatat                                                                                                                                    <  2:2793040/150‑1 (MQ=255)
                     tGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGt                                                                                                                                  <  1:3119228/150‑1 (MQ=255)
                     tGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGt                                                                                                                                  <  2:2327508/150‑1 (MQ=255)
                     tGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGt                                                                                                                                  <  2:3745056/150‑1 (MQ=255)
                      gCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTa                                                                                                                                 <  1:4146124/150‑1 (MQ=255)
                        aCCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACt                                                                                                                               >  2:1439403/1‑150 (MQ=255)
                             gAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCta                                                                                                                          >  2:119458/1‑150 (MQ=255)
                               aCGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCtata                                                                                                                        >  2:2168031/1‑150 (MQ=255)
                                 gcgTGAATCAAACCGGGGATATACCTAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGAGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAg                                                                                                                      <  2:2037048/150‑1 (MQ=255)
                                  cgTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGa                                                                                                                     <  2:931760/150‑1 (MQ=255)
                                   gTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGaa                                                                                                                    <  2:3121098/150‑1 (MQ=255)
                                     gAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGaaaa                                                                                                                  >  1:1392817/1‑150 (MQ=255)
                                       aTCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAAtt                                                                                                                >  2:1820831/1‑150 (MQ=255)
                                       aTCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAAtt                                                                                                                >  2:4009405/1‑150 (MQ=255)
                                         cAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACTCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCACTATAAGAAAATTAc                                                                                                              >  1:2170188/1‑150 (MQ=255)
                                          aaaCCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAGTGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACt                                                                                                             >  1:2428534/1‑150 (MQ=255)
                                           aaCCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTc                                                                                                            >  1:2702816/1‑150 (MQ=255)
                                            aCCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCa                                                                                                           >  2:1422956/1‑150 (MQ=255)
                                              cGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCAtt                                                                                                         >  1:3673047/1‑150 (MQ=255)
                                              cGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCAtt                                                                                                         <  2:4415/150‑1 (MQ=255)
                                                gggATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGt                                                                                                       <  1:1068601/150‑1 (MQ=255)
                                                  gagataCCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGttt                                                                                                     <  2:2316701/147‑1 (MQ=255)
                                                  gATATACACAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGttt                                                                                                     <  2:2061442/150‑1 (MQ=255)
                                                   atatACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTa                                                                                                    >  1:4391927/1‑150 (MQ=255)
                                                          cAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAagag                                                                                             <  1:3094834/150‑1 (MQ=255)
                                                           aaGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAgaga                                                                                            <  1:503230/150‑1 (MQ=255)
                                                            aGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAt                                                                                           <  2:2688318/150‑1 (MQ=255)
                                                             gCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAtt                                                                                          <  2:3939878/150‑1 (MQ=255)
                                                              cAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAttt                                                                                         <  1:1825486/150‑1 (MQ=255)
                                                              cAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAttt                                                                                         <  1:2424066/150‑1 (MQ=255)
                                                               aGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAtttt                                                                                        <  2:3359771/150‑1 (MQ=255)
                                                               aGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAtttt                                                                                        >  1:2827039/1‑150 (MQ=255)
                                                               aGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAtttt                                                                                        >  1:3105746/1‑150 (MQ=255)
                                                               aGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGAtttt                                                                                        <  2:4612938/150‑1 (MQ=255)
                                                                  gtCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTAtc                                                                                     <  2:904981/150‑1 (MQ=255)
                                                                  gtCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTAtc                                                                                     >  2:1932108/1‑150 (MQ=255)
                                                                    cAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTAtctc                                                                                   <  2:3215441/150‑1 (MQ=255)
                                                                    cAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTAtctc                                                                                   >  1:253264/1‑150 (MQ=255)
                                                                     aaCAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATctct                                                                                  >  2:1861330/1‑150 (MQ=255)
                                                                     aaCAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATctct                                                                                  >  2:3577201/1‑150 (MQ=255)
                                                                       cAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTa                                                                                >  1:894006/1‑150 (MQ=255)
                                                                         gAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAg                                                                              <  2:1759280/150‑1 (MQ=255)
                                                                         gAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAg                                                                              >  1:3724678/1‑150 (MQ=255)
                                                                         gAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAg                                                                              >  1:3391022/1‑150 (MQ=255)
                                                                             atTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCgta                                                                          <  1:3432352/150‑1 (MQ=255)
                                                                              ttAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCgtag                                                                         >  2:3913169/1‑150 (MQ=255)
                                                                               taataaTGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCgtagt                                                                        <  2:1995322/150‑1 (MQ=255)
                                                                                aataatGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCgtagta                                                                       >  2:3081731/1‑150 (MQ=255)
                                                                                 atactGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTaa                                                                      <  2:2050142/150‑1 (MQ=255)
                                                                                 ataatGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTaa                                                                      >  1:1449092/1‑150 (MQ=255)
                                                                                 ataatGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTaa                                                                      >  2:2389407/1‑150 (MQ=255)
                                                                                   aatGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAAtt                                                                    <  1:2340990/150‑1 (MQ=255)
                                                                                    atGAACGCCCAACCGAACCCTTTACCGAGCAGCACGTCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAAttt                                                                   <  1:3246399/150‑1 (MQ=255)
                                                                                    atGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAAttt                                                                   <  2:730918/150‑1 (MQ=255)
                                                                                    atGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAAttt                                                                   <  2:7043/150‑1 (MQ=255)
                                                                                    atGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAAttt                                                                   >  1:1203290/1‑150 (MQ=255)
                                                                                      gAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTa                                                                 >  1:3858581/1‑150 (MQ=255)
                                                                                             cAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGc                                                          >  2:133761/1‑150 (MQ=255)
                                                                                               aCCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCt                                                        >  2:4062152/1‑150 (MQ=255)
                                                                                                ccGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTg                                                       >  1:2088794/1‑150 (MQ=255)
                                                                                                   aaCCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCa                                                    <  2:3987988/150‑1 (MQ=255)
                                                                                                   aaCCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCa                                                    >  2:2924136/1‑150 (MQ=255)
                                                                                                    aCCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAg                                                   >  2:22469/1‑150 (MQ=255)
                                                                                                     cccTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGt                                                  >  2:2425584/1‑150 (MQ=255)
                                                                                                      ccTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGtt                                                 <  1:1644760/150‑1 (MQ=255)
                                                                                                      ccTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGtt                                                 >  2:1515756/1‑150 (MQ=255)
                                                                                                         ttACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCa                                              >  1:451688/1‑150 (MQ=255)
                                                                                                         ttACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCa                                              >  1:1378030/1‑150 (MQ=255)
                                                                                                             cGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCtt                                          <  1:2206280/150‑1 (MQ=255)
                                                                                                                  agcaCGCCGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCt                                     <  1:2005331/150‑1 (MQ=255)
                                                                                                                  agcaCGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCt                                     <  2:3155240/150‑1 (MQ=255)
                                                                                                                  agcaCGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCt                                     >  1:41594/1‑150 (MQ=255)
                                                                                                                  agcaCGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGGACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCt                                     <  1:329776/150‑1 (MQ=255)
                                                                                                                   gcaCGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCtt                                    >  2:2982752/1‑150 (MQ=255)
                                                                                                                         cGAGCGGCGGCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTActc                              >  2:1560798/1‑150 (MQ=255)
                                                                                                                             cggcggCAGAATGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCAt                          >  2:2592761/1‑150 (MQ=255)
                                                                                                                              ggcggcAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCAtt                         <  2:2428534/150‑1 (MQ=255)
                                                                                                                              ggcggcAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCAtt                         <  2:4585496/150‑1 (MQ=255)
                                                                                                                                   cAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACgc                    >  2:1040638/1‑150 (MQ=255)
                                                                                                                                      aaTGATGGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACgctgc                 >  2:3916302/1‑150 (MQ=255)
                                                                                                                                       atgatgGTGATGACTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACgctgct                <  1:2727747/150‑1 (MQ=255)
                                                                                                                                          atgGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAg             >  1:1948961/1‑150 (MQ=255)
                                                                                                                                           tgGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAgg            >  2:519810/1‑150 (MQ=255)
                                                                                                                                           tgGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAgg            <  1:3936302/150‑1 (MQ=255)
                                                                                                                                             gTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCt          <  1:1932141/150‑1 (MQ=255)
                                                                                                                                               gatgaCGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTgg        >  1:1029450/1‑150 (MQ=255)
                                                                                                                                                 tgaCTATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTGGta      <  2:3695441/150‑1 (MQ=255)
                                                                                                                                                  gaCGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTGGtat     <  2:3949109/150‑1 (MQ=255)
                                                                                                                                                    cGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTGGTatat   >  1:724139/1‑150 (MQ=255)
                                                                                                                                                     gATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTGGTATATg  <  1:4586380/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAATTACTCATTGTTTAAAAAGAGATTTTATCTCTTAAGCGTAGTAATTTTAGCGGAGCCTGCCAGTTTCAGCTTACGCTTTTACTCTCATTTACGCTGCTGAGGCTGGTATATG  >  CP009273/2790221‑2790519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A