Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F224 I0 R1
|
1457 |
284.0 |
9290224 |
95.7% |
8890744 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,203,599 |
A→T |
20.5% |
W102R (TGG→AGG) |
tsaD ← |
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,203,599 | 0 | A | T | 20.5%
| 691.0
/ 177.7
| 287 | W102R (TGG→AGG) | tsaD | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
| Reads supporting (aligned to +/- strand): ref base A (127/101); new base T (34/25); total (161/126) |
| Fisher's exact test for biased strand distribution p-value = 8.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
Only 100 of 292 total aligned reads displayed.
GTACTGACCAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAACGGTACGGTTTTACGCA > CP009273/3203450‑3203748
|
gTACTGACCAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCa < 2:110705/150‑1 (MQ=255)
tACTGACCAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAg > 2:4419351/1‑150 (MQ=255)
tACTGACCAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAg > 1:4307011/1‑150 (MQ=255)
aCTGACCAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAgg > 1:1757280/1‑150 (MQ=255)
gACCAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCaa < 2:1824764/150‑1 (MQ=255)
ccAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAAc > 2:3478767/1‑150 (MQ=255)
cAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACg < 1:683380/150‑1 (MQ=255)
cAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACg > 2:1978710/1‑150 (MQ=255)
aaTGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGc > 2:4470075/1‑150 (MQ=255)
aTGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGcc > 1:3009225/1‑150 (MQ=255)
ccAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCGGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCaga < 2:4186222/150‑1 (MQ=255)
cAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCagag > 1:1139953/1‑150 (MQ=255)
cAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCagag < 1:1416636/150‑1 (MQ=255)
tCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAAc < 1:1774049/150‑1 (MQ=255)
cACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACg < 2:746475/150‑1 (MQ=255)
gCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGccc > 2:3018040/1‑150 (MQ=255)
gCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGccc < 2:1570196/150‑1 (MQ=255)
gCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGccc < 2:1691459/150‑1 (MQ=255)
aTTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACg < 1:2598088/150‑1 (MQ=255)
tAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGt > 1:402115/1‑150 (MQ=255)
tAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGt > 1:402072/1‑150 (MQ=255)
cTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTcgc < 2:2290959/150‑1 (MQ=255)
cTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTcgc > 1:1364976/1‑150 (MQ=255)
tATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCaa > 2:2468244/1‑150 (MQ=255)
aTGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAAc > 2:1006980/1‑150 (MQ=255)
aCCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAg < 1:1807091/150‑1 (MQ=255)
ccgccgGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGt > 2:3292794/1‑150 (MQ=255)
cgccgGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTa > 2:1366034/1‑150 (MQ=255)
ggAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAgcgc > 2:1213505/1‑150 (MQ=255)
aCAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCg > 1:202021/1‑150 (MQ=255)
aCAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCg > 1:3721768/1‑150 (MQ=255)
aaGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGAc > 2:3365851/1‑150 (MQ=255)
aaGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGAc > 2:3800667/1‑150 (MQ=255)
agcagcGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACt < 1:737276/150‑1 (MQ=255)
agcGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAAt < 1:872674/150‑1 (MQ=255)
agcGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAAt < 2:2496301/150‑1 (MQ=255)
gcAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCa < 1:106191/150‑1 (MQ=255)
aacaaACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAgg > 1:1936807/1‑150 (MQ=255)
aacaaACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAgg < 1:1320532/150‑1 (MQ=255)
acaaACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAggg < 1:2400957/150‑1 (MQ=255)
aaaCGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGcc < 2:863883/150‑1 (MQ=255)
cGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGc > 2:3813851/1‑150 (MQ=255)
gAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCgg > 1:4389522/1‑150 (MQ=255)
aaaTTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGt > 2:2699289/1‑150 (MQ=255)
aaaTTCCGGCGGGTTATCTTCCAGCATCGGCGCTAAAAGATGCCCTTCCATATGGTGAACAGGGAACGCCGGAACGTCCCAGGCAAAAGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGt > 1:3485296/1‑150 (MQ=255)
ttCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGtata < 2:4622477/150‑1 (MQ=255)
tCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAg < 1:4062863/150‑1 (MQ=255)
tCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAg > 1:3078249/1‑150 (MQ=255)
gcggGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCTCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCca < 2:235040/150‑1 (MQ=255)
cggGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCcac > 1:2832843/1‑150 (MQ=255)
gggTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCcaca > 1:1697048/1‑150 (MQ=255)
gggTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCcaca < 1:361678/150‑1 (MQ=255)
ggTTATCTTCCAGCATCGTCGCTAACTGATTCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACAAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAg < 1:1491505/150‑1 (MQ=255)
ggTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAg < 1:4419351/150‑1 (MQ=255)
aTCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATc < 1:1035716/150‑1 (MQ=255)
aTCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATc < 1:1636653/150‑1 (MQ=255)
ttCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAAt > 1:1288492/1‑150 (MQ=255)
ttCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAAt < 1:4123123/150‑1 (MQ=255)
tCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATg < 1:2312410/150‑1 (MQ=255)
aGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCt > 1:2847843/1‑150 (MQ=255)
gCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCtt > 2:1824353/1‑150 (MQ=255)
cATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCttt > 1:520577/1‑150 (MQ=255)
cATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCttt > 1:2094468/1‑150 (MQ=255)
aTCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCtttt < 2:2991069/150‑1 (MQ=255)
aTCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCtttt < 2:2340267/150‑1 (MQ=255)
tCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTg > 1:3427961/1‑150 (MQ=255)
tCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTg > 1:3844034/1‑150 (MQ=255)
cGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGc > 2:1317336/1‑150 (MQ=255)
cgcTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGt < 2:3242910/150‑1 (MQ=255)
cgcTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGt > 2:2048154/1‑150 (MQ=255)
cgcTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGt > 1:2950484/1‑150 (MQ=255)
gcTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACACCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGtt > 2:2866868/1‑150 (MQ=255)
cTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTa < 1:4607709/150‑1 (MQ=255)
cAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAAcc > 2:3637569/1‑150 (MQ=255)
gATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAg < 1:1162895/150‑1 (MQ=255)
gCCCTGCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACt < 1:3112474/150‑1 (MQ=255)
ccTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTcc > 1:4489218/1‑150 (MQ=255)
ccTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTcc < 2:3076894/150‑1 (MQ=255)
tCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCttt > 1:314976/1‑150 (MQ=255)
atatGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAgc > 2:4575504/1‑150 (MQ=255)
atatGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAgc < 2:3027607/150‑1 (MQ=255)
tatGGTGTACAGGGATCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAgcg < 1:3320370/150‑1 (MQ=255)
tatGGTGTACAGGGATCGCCAGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAgcg < 1:624681/150‑1 (MQ=255)
tGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGcgcc < 2:1626245/150‑1 (MQ=255)
tGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGcgcc < 2:4299616/150‑1 (MQ=255)
ggTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGcgccg > 1:2776280/1‑150 (MQ=255)
gtACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCTCAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCt < 2:2503106/150‑1 (MQ=255)
aGGGATCGCCGGAACGACCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGAt > 2:4127802/1‑150 (MQ=255)
ggATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCa > 1:2161563/1‑150 (MQ=255)
aTCGCCGGAACGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAac < 2:1139963/150‑1 (MQ=255)
cGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAacggtac > 2:257031/1‑150 (MQ=255)
cGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAacggtac < 2:563494/150‑1 (MQ=255)
cGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAacggtac < 1:3522566/150‑1 (MQ=255)
ggAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAacggtacg > 1:2044985/1‑150 (MQ=255)
ggAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAacggtacg < 2:3734205/150‑1 (MQ=255)
ggAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAacggtacg > 1:2644932/1‑150 (MQ=255)
cGTCCCTGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAACGGTACGGttt < 2:3071830/150‑1 (MQ=255)
gTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAACGGTACGGtttt < 2:4532097/150‑1 (MQ=255)
tCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGTGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAACGGTACGGTTTTa < 2:3703304/150‑1 (MQ=255)
cAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAACGGTACGGTTTTACGc > 1:1738453/1‑150 (MQ=255)
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GTACTGACCAATGCCAGTCACGCTGATTAACTGCGTATGACCGCCGGAAACAAGCAGCGCAACAAACGGAAATTCCGGCGGGTTATCTTCCAGCATCGGCGCTAACAGATGCCCTTCCATATGGTGTACAGGGATCGCCGGAACGTCCCAGGCAAACGCCAGAGAACGCCCCACGGTCGCGCCAACCAGTAGCGCGCCGACTAATCCAGGGCCTGCGGTATAGGCCACAGCATCAATGTCTTTTGCCGTTAAACCAGACTCCTTTAGCGCCGCCTGGATCAACGGTACGGTTTTACGCA > CP009273/3203450‑3203748
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
