Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F224 I0 R1
|
1457 |
284.0 |
9290224 |
95.7% |
8890744 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,214,709 |
C→A |
18.4% |
intergenic (‑103/‑116) |
ygjH ← / → ebgR |
putative tRNA binding protein; putative tRNA corner chaperone/transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,214,709 | 0 | C | A | 18.4%
| 716.6
/ 105.4
| 239 | intergenic (‑103/‑116) | ygjH/ebgR | putative tRNA binding protein; putative tRNA corner chaperone/transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (102/93); new base A (22/22); total (124/115) |
| Fisher's exact test for biased strand distribution p-value = 8.68e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01 |
Only 100 of 242 total aligned reads displayed.
CGCGCATTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCGCAATCGAAGCT > CP009273/3214561‑3214857
|
cgcgCATTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCg > 1:4349821/1‑150 (MQ=255)
cgcgCATTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCg < 1:4577025/150‑1 (MQ=255)
cgcgCATTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCg < 1:940091/150‑1 (MQ=255)
gcATTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCtg < 2:3410379/150‑1 (MQ=255)
cATTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTAGAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCtgt < 2:125505/150‑1 (MQ=255)
aTTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCtgtg > 2:4279068/1‑150 (MQ=255)
aTTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCtgtg > 2:2905452/1‑150 (MQ=255)
cAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTAcc > 1:1469885/1‑150 (MQ=255)
aGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCg > 1:105321/1‑150 (MQ=255)
aGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCg > 1:3720790/1‑150 (MQ=255)
aGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCg > 1:2550519/1‑150 (MQ=255)
aGACGTGCAAAAACAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTTTAGGCTAAAAATGGAGAATGAAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCg > 1:3721133/1‑150 (MQ=255)
aCGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGtt < 1:3090463/150‑1 (MQ=255)
gTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTAc < 2:4060778/150‑1 (MQ=255)
gTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTAc > 1:3514173/1‑150 (MQ=255)
tGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACa < 1:1720576/150‑1 (MQ=255)
gCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAg < 2:3966792/150‑1 (MQ=255)
aaaTCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGt < 2:419536/150‑1 (MQ=255)
aaaTCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGt < 2:3372564/150‑1 (MQ=255)
cAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCaaa > 1:3123725/1‑150 (MQ=255)
aGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAg > 1:1710734/1‑150 (MQ=255)
gCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGa < 1:152069/150‑1 (MQ=255)
cGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTACACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGaa < 1:1251066/150‑1 (MQ=255)
tAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAAc < 1:2954163/150‑1 (MQ=255)
aaGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAAcg > 2:3199476/1‑150 (MQ=255)
cACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCt < 1:4186690/150‑1 (MQ=255)
cACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCt < 1:3658617/150‑1 (MQ=255)
ggTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCttta > 2:542057/1‑150 (MQ=255)
ttCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCtttattt < 1:2181933/150‑1 (MQ=255)
ccATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTAc < 2:217566/150‑1 (MQ=255)
aTTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTg > 2:3135415/1‑150 (MQ=255)
cTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGaaaa < 2:852061/150‑1 (MQ=255)
cTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGaaaa < 2:2892699/150‑1 (MQ=255)
cctccCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAg > 1:3104611/1‑150 (MQ=255)
cctccCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAg < 1:327498/150‑1 (MQ=255)
cctccCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAg > 2:2507788/1‑150 (MQ=255)
cctccCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAg > 2:2508147/1‑150 (MQ=255)
ctccCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAgg > 2:1674237/1‑150 (MQ=255)
ctccCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAgg > 2:2259121/1‑150 (MQ=255)
tccCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGt > 2:1572996/1‑150 (MQ=255)
cccTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTg > 1:4080114/1‑150 (MQ=255)
ttAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGAcc < 2:4638866/150‑1 (MQ=255)
gggTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGa > 1:3763654/1‑150 (MQ=255)
gTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATa > 1:195521/1‑150 (MQ=255)
tAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATaa > 2:4496757/1‑150 (MQ=255)
aaaaTTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAg > 1:4017070/1‑150 (MQ=255)
aaaTTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGc < 1:2283935/150‑1 (MQ=255)
aTTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCAc < 1:4272488/150‑1 (MQ=255)
aCTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCct > 2:2533081/1‑150 (MQ=255)
cTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCctc > 2:41303/1‑150 (MQ=255)
aaCTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTAc < 2:935029/150‑1 (MQ=255)
aaCTAGAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTAc < 2:3877871/150‑1 (MQ=255)
aCTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACa > 1:1333528/1‑150 (MQ=255)
aCTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACa < 2:1775994/150‑1 (MQ=255)
aCTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACa < 1:889489/150‑1 (MQ=255)
taGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATgg > 1:689681/1‑150 (MQ=255)
taGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATgg > 1:367617/1‑150 (MQ=255)
taGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTAACGTAACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGAAAAGCACTTCCTCTACaaatg > 2:3526811/1‑147 (MQ=255)
cAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATggggg < 1:2681086/150‑1 (MQ=255)
cAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATggggg > 1:2197698/1‑150 (MQ=255)
cAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATggggg < 1:85203/150‑1 (MQ=255)
aaaaGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGgc > 1:3945889/1‑150 (MQ=255)
ttCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGAGTCAAAGAAACGCGCTTTATTTACTGTAAACAGGTGACCCGATAAGCACTTCCTCGACAATGGGGGCGCACATCa < 2:1163016/150‑1 (MQ=255)
ttCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCa < 2:165751/150‑1 (MQ=255)
tctcAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAg > 2:1812004/1‑150 (MQ=255)
tctcAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAg < 2:3781603/150‑1 (MQ=255)
aTCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGaaa > 1:1001710/1‑150 (MQ=255)
tCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAg > 1:4416042/1‑150 (MQ=255)
cTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTa > 1:2843410/1‑150 (MQ=255)
tGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTaa < 1:403840/150‑1 (MQ=255)
tGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTaa > 1:227811/1‑150 (MQ=255)
gTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTaaa > 1:1326648/1‑150 (MQ=255)
tAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTaaaa > 2:4173811/1‑150 (MQ=255)
aGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTaaaaa > 2:2562304/1‑150 (MQ=255)
gCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAg > 1:1842807/1‑150 (MQ=255)
gCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAg > 1:3690574/1‑150 (MQ=255)
tAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGt > 2:378392/1‑150 (MQ=255)
tAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCACTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGt > 1:3613825/1‑150 (MQ=255)
aaaaTGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTaa > 2:3266218/1‑150 (MQ=255)
aaaTGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTaaa > 2:2138772/1‑150 (MQ=255)
aaaTGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTaaa < 1:3398170/150‑1 (MQ=255)
tGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACAt < 1:812783/150‑1 (MQ=255)
ggAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATg < 2:2638780/150‑1 (MQ=255)
gagaATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATgg < 2:3603917/150‑1 (MQ=255)
gagaATGCAGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATgg > 1:2489035/1‑150 (MQ=255)
agaATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGc > 1:2370203/1‑150 (MQ=255)
gaATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGTCGCACATCAGTGAAATTAAAAAAGGTAAACATGGCa < 2:127754/150‑1 (MQ=255)
aTGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAac < 1:520389/150‑1 (MQ=255)
tGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAaca < 2:3018684/150‑1 (MQ=255)
tGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAaca < 2:4429253/150‑1 (MQ=255)
gCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAacac < 1:2058155/150‑1 (MQ=255)
aGGCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTa > 1:747096/1‑150 (MQ=255)
gCGTGATCACATTCGTGAGCAGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTaaa > 2:3692700/1‑150 (MQ=255)
cGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTaaaa > 2:2063958/1‑150 (MQ=255)
acaTTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCg > 1:2622376/1‑150 (MQ=255)
acaTTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCg < 2:3048530/150‑1 (MQ=255)
tCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCGCAAt < 2:97933/150‑1 (MQ=255)
aGCCGCTGTGTTACCTTTACAGCGTCAAAGAAACGAGATTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCGCAATCGAAg < 1:4431908/150‑1 (MQ=255)
gCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCGCAATCGAAGc < 1:1572996/150‑1 (MQ=255)
ccGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCGCAATCGAAGCt < 2:2209615/150‑1 (MQ=255)
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CGCGCATTTCCAGACGTGCAAAATCAGCGTAAGCCACGGTTTCCATTGCTTCCTCCCTTAGGGTAAAATTTTACTAAACTATAGCAAAAGTTTTTCTCAATCCTGTAGGCTAAAAATGGAGAATGCAGGCGTGATCACATTCGTGAGCCGCTGTGTTACCGTTACAGCGTCAAAGAAACGCGCTTTATTTACTGAAAACAGGTGACCCGATAAGCACTTCCTCTACAATGGGGGCGCACATCAGGGAAAGTAAAAAAGGTAAACATGGCAACACTAAAAGACATCGCAATCGAAGCT > CP009273/3214561‑3214857
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
