Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,544,521 G→T 14.2% H438N (CAC→AAC)  malP ← maltodextrin phosphorylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,544,5210GT14.2% 1033.8 / 95.4 306H438N (CAC→AAC) malPmaltodextrin phosphorylase
Reads supporting (aligned to +/- strand):  ref base G (139/123);  new base T (27/17);  total (166/140)
Fisher's exact test for biased strand distribution p-value = 3.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 309 total aligned reads displayed.

GATTGATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACTTTTTCATCGCCCG  >  CP009273/3544374‑3544670
                                                                                                                                                   |                                                                                                                                                     
gATTGATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGat                                                                                                                                                     <  1:1503158/150‑1 (MQ=255)
gATTGATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGat                                                                                                                                                     >  2:2163521/1‑150 (MQ=255)
   tGATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATAtt                                                                                                                                                  <  1:979014/150‑1 (MQ=255)
   tGATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATAtt                                                                                                                                                  >  1:3090594/1‑150 (MQ=255)
    gATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTc                                                                                                                                                 >  1:2706130/1‑150 (MQ=255)
    gATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTc                                                                                                                                                 >  1:4595484/1‑150 (MQ=255)
       cAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCgg                                                                                                                                              >  1:2504758/1‑150 (MQ=255)
       cAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCgg                                                                                                                                              >  2:762184/1‑150 (MQ=255)
       cAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCgg                                                                                                                                              <  2:44712/150‑1 (MQ=255)
       cAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGAGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCgg                                                                                                                                              >  2:4515546/1‑150 (MQ=255)
        aGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCggg                                                                                                                                             <  1:1333582/150‑1 (MQ=255)
          cTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGaa                                                                                                                                           <  2:2959517/150‑1 (MQ=255)
          cTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGaa                                                                                                                                           >  2:4285898/1‑150 (MQ=255)
           tGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCCTCGCTGGTGATATTCCGGGAAc                                                                                                                                          >  2:1600219/1‑150 (MQ=255)
           tGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAAc                                                                                                                                          <  2:1327312/150‑1 (MQ=255)
            gATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACa                                                                                                                                         <  2:3165465/150‑1 (MQ=255)
            gATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACa                                                                                                                                         <  2:1489112/150‑1 (MQ=255)
             aTCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAg                                                                                                                                        >  1:299178/1‑150 (MQ=255)
             aTCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAg                                                                                                                                        <  2:2983963/150‑1 (MQ=255)
               cgtgaTCGTTAGCCCTCTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCATTGCCGGGTTGCACTGTTTGATCCAGCGACGTTGGGTAATACCGTTGTTGACGTTATGGAATTTGTTCTGCCATAGCTGGTGATATTCCGGGAACAGAt                                                                                                                                      <  2:1533162/147‑1 (MQ=255)
               cGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGAt                                                                                                                                      >  2:137801/1‑150 (MQ=255)
                gagaTCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATc                                                                                                                                     >  2:1305383/1‑150 (MQ=255)
                gagaTCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATc                                                                                                                                     >  2:4080742/1‑150 (MQ=255)
                  gaTCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCtt                                                                                                                                   >  1:445444/1‑150 (MQ=255)
                  gaTCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCtt                                                                                                                                   >  1:1059151/1‑150 (MQ=255)
                  gaTCGTTAGCCCAATCTTTTTGCAGTTATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCtt                                                                                                                                   >  2:3363909/1‑150 (MQ=255)
                   aTCGTTAGCCCACTCTTTTTGCAGTGATTTATCCCACCGTGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGAAGTGTGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGCACAGATCttt                                                                                                                                  <  1:71296/150‑1 (MQ=255)
                   aTCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCttt                                                                                                                                  >  2:286601/1‑150 (MQ=255)
                   aTCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCttt                                                                                                                                  >  2:814030/1‑150 (MQ=255)
                    tctttAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTc                                                                                                                                 <  1:3593698/147‑1 (MQ=255)
                      gTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTcac                                                                                                                               >  1:3701445/1‑150 (MQ=255)
                        tAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTcacca                                                                                                                             >  1:2187327/1‑150 (MQ=255)
                        tAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTcacca                                                                                                                             >  1:2095796/1‑150 (MQ=255)
                         aGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTcaccac                                                                                                                            >  1:2636450/1‑150 (MQ=255)
                         aGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTcaccac                                                                                                                            >  1:4081573/1‑150 (MQ=255)
                             cACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGa                                                                                                                        >  1:2006436/1‑150 (MQ=255)
                              aCTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGAt                                                                                                                       <  2:59326/150‑1 (MQ=255)
                                tctTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATAtt                                                                                                                                                  <  1:167326/121‑1 (MQ=255)
                                tctTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATcc                                                                                                                     >  2:4270676/1‑150 (MQ=255)
                                 ctTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCg                                                                                                                    >  2:327426/1‑150 (MQ=255)
                                   ttttGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAg                                                                                                                  >  1:1843849/1‑150 (MQ=255)
                                    tttGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGt                                                                                                                 <  1:1817358/150‑1 (MQ=255)
                                    tttGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGt                                                                                                                 >  2:2188716/1‑150 (MQ=255)
                                    tttGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGt                                                                                                                 <  1:4147433/150‑1 (MQ=255)
                                      tGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGAGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGc                                                                                                               <  1:224509/150‑1 (MQ=255)
                                        cAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAg                                                                                                             >  2:3504662/1‑150 (MQ=255)
                                        cAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAg                                                                                                             >  1:3631255/1‑150 (MQ=255)
                                          gTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAgcg                                                                                                           >  1:4308877/1‑150 (MQ=255)
                                           tGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAgcgc                                                                                                          >  1:2052744/1‑150 (MQ=255)
                                            gATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGcgcc                                                                                                         >  1:46935/1‑150 (MQ=255)
                                             aTTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGcgccg                                                                                                        >  2:3781160/1‑150 (MQ=255)
                                             aTTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGcgccg                                                                                                        <  2:1971465/150‑1 (MQ=255)
                                               ttATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCa                                                                                                      >  2:2936742/1‑150 (MQ=255)
                                                  tCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAaca                                                                                                   <  2:516060/150‑1 (MQ=255)
                                                       cAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGtt                                                                                              >  1:3334451/1‑150 (MQ=255)
                                                       cAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGtt                                                                                              <  1:2103976/150‑1 (MQ=255)
                                                        agagCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTc                                                                                             <  2:2565782/150‑1 (MQ=255)
                                                        agagCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTc                                                                                             <  1:1962637/150‑1 (MQ=255)
                                                        agagCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTc                                                                                             <  1:1568854/150‑1 (MQ=255)
                                                           gccgccAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCAcc                                                                                          <  1:1490569/150‑1 (MQ=255)
                                                              gccAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACcgcg                                                                                       >  2:3110825/1‑150 (MQ=255)
                                                                cAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGaa                                                                                     >  1:865455/1‑150 (MQ=255)
                                                                   tGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAAcc                                                                                  <  1:952605/150‑1 (MQ=255)
                                                                    gCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGGTCACCGCGAAACCg                                                                                 >  2:2498644/1‑150 (MQ=255)
                                                                       gggTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCa                                                                              >  2:1229411/1‑150 (MQ=255)
                                                                       gggTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCa                                                                              >  2:3811543/1‑150 (MQ=255)
                                                                           tGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACca                                                                          <  1:112094/150‑1 (MQ=255)
                                                                             cACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACcaca                                                                        >  1:2940383/1‑150 (MQ=255)
                                                                                  tttGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAg                                                                   <  2:961879/150‑1 (MQ=255)
                                                                                       tCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCg                                                              >  1:899659/1‑150 (MQ=255)
                                                                                              aCGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATg                                                       <  1:1164745/150‑1 (MQ=255)
                                                                                                    ggTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACttg                                                 <  2:901462/150‑1 (MQ=255)
                                                                                                     gTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACttgt                                                >  1:3156515/1‑150 (MQ=255)
                                                                                                     gTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACttgt                                                <  1:3783679/150‑1 (MQ=255)
                                                                                                       aaTACCGTTGGTGACGTTATGGAATTTTTTCGGCAATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACttgttt                                              <  1:1155678/150‑1 (MQ=255)
                                                                                                         tACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACttgtttgt                                            >  1:3268598/1‑150 (MQ=255)
                                                                                                            cattGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGt                                         <  1:2694721/148‑1 (MQ=255)
                                                                                                            cGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGt                                         >  1:4263846/1‑150 (MQ=255)
                                                                                                            cGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGt                                         >  2:3438347/1‑150 (MQ=255)
                                                                                                               tGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGca                                      <  1:666644/150‑1 (MQ=255)
                                                                                                               tGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGca                                      >  2:854968/1‑150 (MQ=255)
                                                                                                                 gTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACCGGTTCGCCATATGCACTTGTTTGTCGTGcacc                                    <  2:2350197/150‑1 (MQ=255)
                                                                                                                  tGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGcacca                                   <  1:2854666/150‑1 (MQ=255)
                                                                                                                    aCGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCaccacc                                 <  1:3031057/150‑1 (MQ=255)
                                                                                                                     cGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCg                                <  1:1606713/150‑1 (MQ=255)
                                                                                                                        tATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCa                             >  2:2038841/1‑150 (MQ=255)
                                                                                                                         attgtaTTTGTTCGGCCTTATCTGGTTATATTCCGGGAACAGATATTTCTCCACCAGTTCCGATTGCAGCGCCGAAACACCGTTCAACGCGAAAACGCAAACCACACACAGGTTCTCCATATGCTCTTGTTTGTCGTGCACCACCGACAg                            <  2:2618720/145‑1 (MQ=255)
                                                                                                                         aTGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAg                            >  2:300190/1‑150 (MQ=255)
                                                                                                                         aTGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAg                            >  2:2787473/1‑150 (MQ=255)
                                                                                                                          tGGAATTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGt                           <  1:818096/150‑1 (MQ=255)
                                                                                                                              aTTTGTTCGGCCATAGCTGGTTATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTgg                       <  2:3198563/150‑1 (MQ=255)
                                                                                                                                  gTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCca                   >  2:3986800/1‑150 (MQ=255)
                                                                                                                                     cGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCacac                >  2:3706359/1‑150 (MQ=255)
                                                                                                                                      ggCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACt               <  2:1720187/150‑1 (MQ=255)
                                                                                                                                         cATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACtttt            <  1:762199/150‑1 (MQ=255)
                                                                                                                                          aTAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACttttt           <  1:2764750/150‑1 (MQ=255)
                                                                                                                                           tAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACTTTTTc          >  1:3957254/1‑150 (MQ=255)
                                                                                                                                               tGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACTTTTTCATCg      <  2:2706253/150‑1 (MQ=255)
                                                                                                                                                  tGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACTTTTTCATCGccc   <  2:2320443/150‑1 (MQ=255)
                                                                                                                                                   gATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACTTTTTCATCGCCCg  <  1:3364008/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
GATTGATCAGCTGATCGAGATCGTTAGCCCACTCTTTTTGCAGTGATTTATCCAACAGAGCCGCCAGTGCCGGGTTGCACTGTTTGATCCAGCGACGTGGGGTAATACCGTTGGTGACGTTATGGAATTTGTTCGGCCATAGCTGGTGATATTCCGGGAACAGATCTTTCACCACCAGATCCGAGTGCAGCGCCGCAACACCGTTCACCGCGAAACCGCCAACCACACACAGGTTCGCCATATGCACTTGTTTGTCGTGCACCACCGCCAGTTTGGCCCACACTTTTTCATCGCCCG  >  CP009273/3544374‑3544670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A