Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,144,163 C→A 22.1% A205S (GCT→TCT)  argE ← acetylornithine deacetylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,144,1630CA22.1% 817.9 / 166.8 303A205S (GCT→TCT) argEacetylornithine deacetylase
Reads supporting (aligned to +/- strand):  ref base C (117/119);  new base A (24/43);  total (141/162)
Fisher's exact test for biased strand distribution p-value = 5.25e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

Only 100 of 307 total aligned reads displayed.

GCAAATACGGTTAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCGGGCGCAGGGCGGTAGTTTCGG  >  CP009273/4144014‑4144312
                                                                                                                                                     |                                                                                                                                                     
gcAAATACGGTTAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGc                                                                                                                                                       >  1:1533453/1‑150 (MQ=255)
 cAAATACGGTTAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCg                                                                                                                                                      <  2:1739155/150‑1 (MQ=255)
    aTACGGTTAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTa                                                                                                                                                   <  1:3457679/150‑1 (MQ=255)
        ggTTAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTc                                                                                                                                               >  1:4580541/1‑150 (MQ=255)
        ggTTAGAAGCGTCGCCAACGTGAATATGCCCGAGGTTGAGCGTAGGGTATTGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGAAATTGCAAAATATGTCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTc                                                                                                                                               <  2:789520/150‑1 (MQ=255)
         gTTAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTcc                                                                                                                                              >  1:1114738/1‑150 (MQ=255)
          ttAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCcg                                                                                                                                             >  1:2669558/1‑150 (MQ=255)
            aGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCcgcg                                                                                                                                           <  1:4274263/150‑1 (MQ=255)
              aaGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTg                                                                                                                                         >  2:2706477/1‑150 (MQ=255)
              aaGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTg                                                                                                                                         <  1:627253/150‑1 (MQ=255)
               aGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGc                                                                                                                                        >  1:3742179/1‑150 (MQ=255)
                 cGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTg                                                                                                                                      >  1:4478295/1‑150 (MQ=255)
                  gTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTgg                                                                                                                                     >  1:4201597/1‑150 (MQ=255)
                   tCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCACTTGCAAAATATGCCCGATGGCGTCGTGCAGTAGTTCGATAGCGTTAACTCCGCGTGCTGGa                                                                                                                                    >  2:2052936/1‑150 (MQ=255)
                   tCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGa                                                                                                                                    >  2:157144/1‑150 (MQ=255)
                     gCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATc                                                                                                                                  <  2:3546828/150‑1 (MQ=255)
                       cACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGc                                                                                                                                >  2:3032153/1‑150 (MQ=255)
                        aCCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCt                                                                                                                               <  1:3877029/150‑1 (MQ=255)
                          cGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTgg                                                                                                                             >  1:3082942/1‑150 (MQ=255)
                              aaTATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTg                                                                                                                         >  1:4565231/1‑150 (MQ=255)
                               atatGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGc                                                                                                                        <  1:103560/150‑1 (MQ=255)
                               atatGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGc                                                                                                                        <  1:3896184/150‑1 (MQ=255)
                                  tGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGcccc                                                                                                                     <  1:4374209/150‑1 (MQ=255)
                                  tGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGcccc                                                                                                                     <  2:376647/150‑1 (MQ=255)
                                   gCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCg                                                                                                                    >  2:2115591/1‑150 (MQ=255)
                                   gCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCg                                                                                                                    <  2:181706/150‑1 (MQ=255)
                                     ccGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGAc                                                                                                                  >  2:3363097/1‑150 (MQ=255)
                                     ccGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGAc                                                                                                                  >  2:1038010/1‑150 (MQ=255)
                                             gAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTg                                                                                                          >  2:1844298/1‑150 (MQ=255)
                                             gAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTg                                                                                                          <  1:1879892/150‑1 (MQ=255)
                                             gAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTg                                                                                                          >  2:3698970/1‑150 (MQ=255)
                                              aGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGa                                                                                                         <  1:683104/150‑1 (MQ=255)
                                              aGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGa                                                                                                         <  1:2160414/150‑1 (MQ=255)
                                                cGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAAt                                                                                                       >  1:3184746/1‑150 (MQ=255)
                                                  tAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATAc                                                                                                     <  2:1983361/150‑1 (MQ=255)
                                                    gggTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACgg                                                                                                   <  1:2409910/150‑1 (MQ=255)
                                                      gTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGAt                                                                                                 <  1:564721/150‑1 (MQ=255)
                                                       tATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTGTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATg                                                                                                <  2:4595419/150‑1 (MQ=255)
                                                        aTGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATgg                                                                                               >  2:265457/1‑150 (MQ=255)
                                                         tGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGc                                                                                              >  1:4349689/1‑150 (MQ=255)
                                                             aCGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTa                                                                                          <  1:3568500/150‑1 (MQ=255)
                                                                  aaaCGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGat                                                                                     >  1:2279894/1‑150 (MQ=255)
                                                                    aCGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGatat                                                                                   <  2:3928049/150‑1 (MQ=255)
                                                                     cGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATg                                                                                  <  2:2634102/150‑1 (MQ=255)
                                                                          cGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCtt                                                                             >  1:1757266/1‑150 (MQ=255)
                                                                          cGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCtt                                                                             <  1:1939501/150‑1 (MQ=255)
                                                                            tAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTa                                                                           >  1:1587913/1‑150 (MQ=255)
                                                                             aGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTAt                                                                          <  1:1189482/150‑1 (MQ=255)
                                                                              gTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGTTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTAtg                                                                         >  1:4099497/1‑150 (MQ=255)
                                                                               tGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATCTGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTAtgt                                                                        <  2:4279895/150‑1 (MQ=255)
                                                                               tGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTAtgt                                                                        <  2:4626243/150‑1 (MQ=255)
                                                                                 aTAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTgc                                                                      >  2:1240510/1‑150 (MQ=255)
                                                                                 aTAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTgc                                                                      >  1:1645093/1‑150 (MQ=255)
                                                                                  tAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTgcg                                                                     <  1:3029185/150‑1 (MQ=255)
                                                                                  tAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTgcg                                                                     <  1:2374024/150‑1 (MQ=255)
                                                                                    aCGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGcgcg                                                                   <  1:1594535/150‑1 (MQ=255)
                                                                                    aCGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGcgcg                                                                   >  2:146027/1‑150 (MQ=255)
                                                                                    aCGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGcgcg                                                                   <  1:3489850/150‑1 (MQ=255)
                                                                                       ttCTTTCAGGTTATCGCGCAATTGCAGAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTAc                                                                >  1:2072011/1‑150 (MQ=255)
                                                                                       ttCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGACCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTAc                                                                <  2:242733/150‑1 (MQ=255)
                                                                                        tCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTAcc                                                               >  1:1206700/1‑150 (MQ=255)
                                                                                        tCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTAcc                                                               >  2:4207490/1‑150 (MQ=255)
                                                                                         cTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCg                                                              >  2:2919239/1‑150 (MQ=255)
                                                                                         cTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCCGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCg                                                              >  1:4411694/1‑150 (MQ=255)
                                                                                           ttCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGt                                                            <  2:3458686/150‑1 (MQ=255)
                                                                                             cAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTg                                                          >  1:1010848/1‑150 (MQ=255)
                                                                                               ggTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTa                                                        >  1:4007865/1‑150 (MQ=255)
                                                                                                 ttATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGt                                                      <  1:4075050/150‑1 (MQ=255)
                                                                                                  tATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTg                                                     >  1:2727389/1‑150 (MQ=255)
                                                                                                   aTCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGa                                                    <  2:1200330/150‑1 (MQ=255)
                                                                                                   aTCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGa                                                    >  2:148414/1‑150 (MQ=255)
                                                                                                    tCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGAc                                                   <  2:3159008/150‑1 (MQ=255)
                                                                                                    tCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGAc                                                   >  1:3900428/1‑150 (MQ=255)
                                                                                                    tCGCGCAATTGCAAAATATGCCCGAAGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCAGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATTACCTTTATGTGCGCGTACCGGTTGTAGTGAc                                                   >  1:1839816/1‑150 (MQ=255)
                                                                                                     cgcgCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACg                                                  <  2:1451397/150‑1 (MQ=255)
                                                                                                      gcgcAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGt                                                 <  1:4223468/150‑1 (MQ=255)
                                                                                                        gcAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCg                                               >  2:2271833/1‑150 (MQ=255)
                                                                                                          aaTTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGt                                             <  1:336351/150‑1 (MQ=255)
                                                                                                           aTTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGtt                                            >  2:4473532/1‑150 (MQ=255)
                                                                                                            ttGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTc                                           <  2:2423723/150‑1 (MQ=255)
                                                                                                            ttGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTc                                           <  1:1333133/150‑1 (MQ=255)
                                                                                                             tGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCg                                          >  1:2805772/1‑150 (MQ=255)
                                                                                                             tGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCg                                          >  1:486869/1‑150 (MQ=255)
                                                                                                               cAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGcc                                        >  1:3563855/1‑150 (MQ=255)
                                                                                                                aaaaTATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCa                                       >  2:365756/1‑150 (MQ=255)
                                                                                                                aaaaTATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCa                                       >  2:2453877/1‑150 (MQ=255)
                                                                                                                 aaaTATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCGTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCaa                                      >  2:683624/1‑150 (MQ=255)
                                                                                                                      tGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAatgatg                                 >  2:2886277/1‑150 (MQ=255)
                                                                                                                      tGCCCGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAatgatg                                 <  1:124976/150‑1 (MQ=255)
                                                                                                                        cccGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGgc                               >  2:639478/1‑150 (MQ=255)
                                                                                                                          cGATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGgcgc                             >  1:1390009/1‑150 (MQ=255)
                                                                                                                           gATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCa                            >  1:3790331/1‑150 (MQ=255)
                                                                                                                           gATGGCGTCGTGCATTAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCa                            <  2:3786344/150‑1 (MQ=255)
                                                                                                                             tGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAAt                          >  1:769811/1‑150 (MQ=255)
                                                                                                                                  tcgtGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCggg                     <  1:1039583/150‑1 (MQ=255)
                                                                                                                                       cATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCGGGCGCAg                >  1:1701829/1‑150 (MQ=255)
                                                                                                                                         ttAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCGGGCGCAggg              >  1:4404984/1‑150 (MQ=255)
                                                                                                                                          tAGTTCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTGGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCGGGCGCAGGGc             <  2:405217/150‑1 (MQ=255)
                                                                                                                                           aGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCGGGCGCAGGGCg            >  2:1648864/1‑150 (MQ=255)
                                                                                                                                             ttCGATAGAGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCGGGCGCAGGGCGGt          <  1:3287016/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GCAAATACGGTTAGAAGCGTCGCCACCGTGAATATGCCCGAGGTTGAGCGTAGGGTATGGCACGGTAAACGCTTCGTAGTGATAACGTTCTTTCAGGTTATCGCGCAATTGCAAAATATGCCCGATGGCGTCGTGCATTAGTTCGATAGCGTTAACTCCGCGTGCTGGATCGCTGGAGTGCCCCGACTGGCCCTGAATACGGATGGCGTTAGAGATATGACCTTTATGTGCGCGTACCGGTTGTAGTGACGTCGGTTCGCCAATGATGGCGCAATCCGGGCGCAGGGCGGTAGTTTCGG  >  CP009273/4144014‑4144312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A