Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,145,195 G→T 13.2% A89A (GCG→GCT)  argC → N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,145,1950GT13.2% 1027.6 / 85.8 296A89A (GCG→GCT) argCN‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base G (124/133);  new base T (15/24);  total (139/157)
Fisher's exact test for biased strand distribution p-value = 3.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 305 total aligned reads displayed.

GATGCGGGAAAGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTG  >  CP009273/4145046‑4145344
                                                                                                                                                     |                                                                                                                                                     
     gggAAAGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCa                                                                                                                                                  >  2:27063/1‑150 (MQ=255)
       gAAAGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGt                                                                                                                                                >  2:789419/1‑150 (MQ=255)
          aGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTc                                                                                                                                             >  2:1070068/1‑150 (MQ=255)
          aGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTc                                                                                                                                             >  1:693156/1‑150 (MQ=255)
           gTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCt                                                                                                                                            <  2:135438/150‑1 (MQ=255)
           gTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCt                                                                                                                                            >  2:4604571/1‑150 (MQ=255)
              aaTCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGa                                                                                                                                         >  2:2515602/1‑150 (MQ=255)
              aaTCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGa                                                                                                                                         >  2:3059109/1‑150 (MQ=255)
                tctcCGATTTGCATCCGCAGCTATAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAg                                                                                                                                       <  1:4011948/150‑1 (MQ=255)
                 ctcCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGc                                                                                                                                      >  2:1694819/1‑150 (MQ=255)
                    cGATTTTCATCCGCAGCTATAAGGCATCGTTGATCTGCCGTTGCTGACGATGTCGGAAATCAGCGTTTTTAGCCCTGGGGTGTACGTAGTGTTTATAGCGACGGCCTTTGAAGTTAGCCACGATTTTTCGCCGCTTTTTCTTGATGCtgg                                                                                                                                   <  2:754745/150‑1 (MQ=255)
                      aTTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCt                                                                                                                                 <  1:1725681/150‑1 (MQ=255)
                       tttGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTg                                                                                                                                <  2:2065266/150‑1 (MQ=255)
                        ttGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGc                                                                                                                               <  2:3507536/150‑1 (MQ=255)
                         tGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCg                                                                                                                              >  1:3557908/1‑150 (MQ=255)
                         tGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCg                                                                                                                              >  2:3816242/1‑150 (MQ=255)
                          gCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCgt                                                                                                                             >  1:1491676/1‑150 (MQ=255)
                                  aGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCg                                                                                                                     >  1:2385772/1‑150 (MQ=255)
                                  aGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCg                                                                                                                     >  2:608443/1‑150 (MQ=255)
                                     tAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGAcc                                                                                                                  >  2:2185403/1‑150 (MQ=255)
                                      aaaaGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCt                                                                                                                 <  1:3277168/150‑1 (MQ=255)
                                      aaaaGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCt                                                                                                                 <  1:3101616/150‑1 (MQ=255)
                                        aaGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCttt                                                                                                               >  1:4306249/1‑150 (MQ=255)
                                         aGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTc                                                                                                              >  1:34148/1‑150 (MQ=255)
                                          ggCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTcc                                                                                                             <  1:2899453/150‑1 (MQ=255)
                                                gTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGcgcg                                                                                                       >  1:403887/1‑150 (MQ=255)
                                                     tCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCg                                                                                                  <  1:2243112/150‑1 (MQ=255)
                                                     tCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCg                                                                                                  <  1:474733/150‑1 (MQ=255)
                                                       tGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCgtg                                                                                                >  1:988646/1‑150 (MQ=255)
                                                       tGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCgtg                                                                                                <  1:3894337/150‑1 (MQ=255)
                                                         ccGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGtt                                                                                              <  2:1557220/150‑1 (MQ=255)
                                                          cGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTa                                                                                             <  2:1743505/150‑1 (MQ=255)
                                                          cGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTa                                                                                             <  1:4580499/150‑1 (MQ=255)
                                                          cGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTa                                                                                             >  2:2354308/1‑150 (MQ=255)
                                                          cGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTa                                                                                             >  2:2888475/1‑150 (MQ=255)
                                                           gTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTaa                                                                                            <  2:3044464/150‑1 (MQ=255)
                                                           gTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTaa                                                                                            >  2:344484/1‑150 (MQ=255)
                                                           gTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGAGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCATTCCGGAGCTTTTCGTGTTaa                                                                                            >  2:4633296/1‑150 (MQ=255)
                                                            ttGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAac                                                                                           <  2:1251264/150‑1 (MQ=255)
                                                             tGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAacg                                                                                          >  1:1097069/1‑150 (MQ=255)
                                                             tGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAacg                                                                                          >  2:2538594/1‑150 (MQ=255)
                                                               cAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAacgac                                                                                        <  1:4537221/150‑1 (MQ=255)
                                                                aGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAacgacg                                                                                       >  2:959931/1‑150 (MQ=255)
                                                                aGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAacgacg                                                                                       >  1:1948285/1‑150 (MQ=255)
                                                                   cGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCa                                                                                    >  2:1034909/1‑150 (MQ=255)
                                                                     aTGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCAcc                                                                                  <  2:2597474/150‑1 (MQ=255)
                                                                       gTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCtt                                                                                >  1:102232/1‑150 (MQ=255)
                                                                       gTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCtt                                                                                <  1:2823456/150‑1 (MQ=255)
                                                                        tCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTc                                                                               <  1:2670091/150‑1 (MQ=255)
                                                                        tCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTc                                                                               >  1:3334206/1‑150 (MQ=255)
                                                                          ggATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTa                                                                             <  1:3769883/150‑1 (MQ=255)
                                                                            atatCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATg                                                                           >  1:531441/1‑150 (MQ=255)
                                                                            atatCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATg                                                                           <  2:683760/150‑1 (MQ=255)
                                                                             tatCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGa                                                                          <  2:3654478/150‑1 (MQ=255)
                                                                                 aGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGaaaaa                                                                      >  2:4445653/1‑150 (MQ=255)
                                                                                       tttAGCCCAGGTGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTAc                                                                <  1:263242/150‑1 (MQ=255)
                                                                                        ttAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACg                                                               <  1:2935711/150‑1 (MQ=255)
                                                                                         tAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACgg                                                              >  1:3148420/1‑150 (MQ=255)
                                                                                         tAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACgg                                                              >  2:3592522/1‑150 (MQ=255)
                                                                                          aGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGc                                                             >  1:1804153/1‑150 (MQ=255)
                                                                                              cAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTa                                                         <  1:3455994/150‑1 (MQ=255)
                                                                                               aGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTAc                                                        <  2:4271588/150‑1 (MQ=255)
                                                                                                ggggTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTAcc                                                       >  1:2154333/1‑150 (MQ=255)
                                                                                                ggggTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTAcc                                                       <  2:32590/150‑1 (MQ=255)
                                                                                                  ggTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCa                                                     <  1:1658028/150‑1 (MQ=255)
                                                                                                    tGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATc                                                   >  2:1497270/1‑150 (MQ=255)
                                                                                                     ggACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCa                                                  <  1:3396754/150‑1 (MQ=255)
                                                                                                       aCGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAAt                                                <  1:4144946/150‑1 (MQ=255)
                                                                                                        cGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATa                                               >  1:2694251/1‑150 (MQ=255)
                                                                                                         gTAGTGTTTATCGCCACCCCCCATGAAGTTAGCCACGATTTATCGCCGCAGTTTATTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAAAGACGCCACCATCTATGAAAAATATTACGGCTTTAACCAACAATaa                                              >  2:4496216/1‑149 (MQ=255)
                                                                                                           aGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATAccc                                            >  1:3836791/1‑150 (MQ=255)
                                                                                                           aGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATAccc                                            >  1:1509904/1‑150 (MQ=255)
                                                                                                              gtTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGa                                         >  1:4269037/1‑150 (MQ=255)
                                                                                                              gtTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGa                                         <  1:3234694/150‑1 (MQ=255)
                                                                                                                 tctcGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACt                                      >  2:2171522/1‑150 (MQ=255)
                                                                                                                  ctcGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTg                                     <  2:517110/150‑1 (MQ=255)
                                                                                                                   tcGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGt                                    <  2:2970564/150‑1 (MQ=255)
                                                                                                                   tcGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGt                                    >  1:1936605/1‑150 (MQ=255)
                                                                                                                     gCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTg                                  >  2:274605/1‑150 (MQ=255)
                                                                                                                       cACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGa                                <  1:912323/150‑1 (MQ=255)
                                                                                                                         ccGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAAc                              <  2:3696871/150‑1 (MQ=255)
                                                                                                                          cGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACa                             <  2:1286519/150‑1 (MQ=255)
                                                                                                                          cGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACa                             >  1:1973401/1‑150 (MQ=255)
                                                                                                                           gCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAg                            >  1:2661843/1‑150 (MQ=255)
                                                                                                                             ccATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGc                          >  1:437938/1‑150 (MQ=255)
                                                                                                                              cATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCa                         <  1:1631042/150‑1 (MQ=255)
                                                                                                                               aTGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAg                        <  2:2259257/150‑1 (MQ=255)
                                                                                                                                tGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGc                       >  1:953413/1‑150 (MQ=255)
                                                                                                                                 gAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGcc                      >  1:598538/1‑150 (MQ=255)
                                                                                                                                     ttAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACg                  <  2:885143/150‑1 (MQ=255)
                                                                                                                                     ttAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACg                  <  1:789419/150‑1 (MQ=255)
                                                                                                                                      tAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACgg                 >  1:1919602/1‑150 (MQ=255)
                                                                                                                                      tAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACgg                 >  1:3478118/1‑150 (MQ=255)
                                                                                                                                         ccACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCt              <  2:2451680/150‑1 (MQ=255)
                                                                                                                                          cACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTg             <  2:2271418/150‑1 (MQ=255)
                                                                                                                                          cACGATTTAGCGCCGCAGTTTCTTGAAGCGGGATGTGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTg             >  2:4328461/1‑150 (MQ=255)
                                                                                                                                              aTTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCgg         <  2:4043064/150‑1 (MQ=255)
                                                                                                                                              aTTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCgg         >  1:3960190/1‑150 (MQ=255)
                                                                                                                                                    cgccgcAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgtggt   <  1:3632849/150‑1 (MQ=255)
                                                                                                                                                    cgccgcAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgtggt   <  1:2264618/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GATGCGGGAAAGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTG  >  CP009273/4145046‑4145344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A