Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,145,195 G→T 37.9% A89A (GCG→GCT)  argC → N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,145,1950GT37.9% 371.2 / 283.9 261A89A (GCG→GCT) argCN‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base G (77/85);  new base T (57/42);  total (134/127)
Fisher's exact test for biased strand distribution p-value = 1.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 268 total aligned reads displayed.

GATGCGGGAAAGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTG  >  CP009273/4145046‑4145344
                                                                                                                                                     |                                                                                                                                                     
       gAAAGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGt                                                                                                                                                >  2:2821087/1‑150 (MQ=255)
        aaaGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGtt                                                                                                                                               <  1:2061882/150‑1 (MQ=255)
        aaaGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGtt                                                                                                                                               <  1:893279/150‑1 (MQ=255)
               aTCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGaa                                                                                                                                        >  2:1542987/1‑150 (MQ=255)
                tctcCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAg                                                                                                                                       <  1:4115963/150‑1 (MQ=255)
                 ctcCGATGTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGc                                                                                                                                      <  1:3637084/150‑1 (MQ=255)
                  tcCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCg                                                                                                                                     >  1:3789604/1‑150 (MQ=255)
                     gATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGc                                                                                                                                  >  1:139368/1‑150 (MQ=255)
                     gATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGc                                                                                                                                  >  1:551274/1‑150 (MQ=255)
                      aTTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCt                                                                                                                                 >  1:1298233/1‑150 (MQ=255)
                      aTTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCt                                                                                                                                 <  2:1012876/150‑1 (MQ=255)
                       tttGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTg                                                                                                                                >  2:555253/1‑150 (MQ=255)
                         tGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCg                                                                                                                              >  1:3801465/1‑150 (MQ=255)
                           cATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCgtg                                                                                                                            >  2:2523164/1‑150 (MQ=255)
                           cATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCgtg                                                                                                                            <  1:807065/150‑1 (MQ=255)
                            aTCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCgtgg                                                                                                                           <  1:3708566/150‑1 (MQ=255)
                            aTCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCgtgg                                                                                                                           >  1:4043413/1‑150 (MQ=255)
                                 cAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTc                                                                                                                      >  1:1887680/1‑150 (MQ=255)
                                 cAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTc                                                                                                                      <  1:2191446/150‑1 (MQ=255)
                                 cAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTc                                                                                                                      <  1:2655800/150‑1 (MQ=255)
                                  aGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCg                                                                                                                     >  2:3935793/1‑150 (MQ=255)
                                  aGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCg                                                                                                                     >  2:698558/1‑150 (MQ=255)
                                    cTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGAc                                                                                                                   >  1:2141475/1‑150 (MQ=255)
                                    cTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGAc                                                                                                                   >  1:1550283/1‑150 (MQ=255)
                                     tAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGAcc                                                                                                                  >  1:3083017/1‑150 (MQ=255)
                                      aaaaGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCt                                                                                                                 >  2:1102159/1‑150 (MQ=255)
                                      aaaaGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCt                                                                                                                 <  2:2670673/150‑1 (MQ=255)
                                        aaGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCttt                                                                                                               >  1:2490702/1‑150 (MQ=255)
                                             aTCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGgc                                                                                                          <  2:701456/150‑1 (MQ=255)
                                              tCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGCTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGgcg                                                                                                         <  2:299449/150‑1 (MQ=255)
                                               cGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGgcgc                                                                                                        <  2:3816988/150‑1 (MQ=255)
                                               cGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTGTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGgcgc                                                                                                        >  2:1427088/1‑150 (MQ=255)
                                                      cTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCgt                                                                                                 >  2:530252/1‑150 (MQ=255)
                                                       tGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCgtg                                                                                                <  1:3720692/150‑1 (MQ=255)
                                                         ccGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGtt                                                                                              <  2:4176043/150‑1 (MQ=255)
                                                            ttGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAac                                                                                           <  1:1835468/150‑1 (MQ=255)
                                                               cAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAacgac                                                                                        >  2:3147/1‑150 (MQ=255)
                                                                 gCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGc                                                                                      <  2:465410/150‑1 (MQ=255)
                                                                  ccGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGcc                                                                                     >  2:486266/1‑150 (MQ=255)
                                                                  ccGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGcc                                                                                     <  1:1339904/150‑1 (MQ=255)
                                                                  ccGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGcc                                                                                     <  2:3127170/150‑1 (MQ=255)
                                                                   cGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCa                                                                                    <  1:392986/150‑1 (MQ=255)
                                                                    gATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCAc                                                                                   >  2:2059554/1‑150 (MQ=255)
                                                                      tGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCt                                                                                 >  1:3016009/1‑150 (MQ=255)
                                                                         cGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCt                                                                              <  1:3124481/150‑1 (MQ=255)
                                                                          ggATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCTCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTa                                                                             <  2:3023186/150‑1 (MQ=255)
                                                                          ggATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTa                                                                             <  1:587437/150‑1 (MQ=255)
                                                                           gATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGGTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTAt                                                                            <  2:3766059/150‑1 (MQ=255)
                                                                            atatCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATg                                                                           <  1:150605/150‑1 (MQ=255)
                                                                              atCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTTTTAACGACGCCACCTTCTATGaa                                                                         >  1:2845589/1‑150 (MQ=255)
                                                                                cAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGaaaa                                                                       <  1:489491/150‑1 (MQ=255)
                                                                                cAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGaaaa                                                                       >  1:3369455/1‑150 (MQ=255)
                                                                                 aGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGaaaaa                                                                      >  1:329503/1‑150 (MQ=255)
                                                                                   cGAGTTTAGCCCAGGGGTGGACTTAGTTTTTCTCGCCACCGCCCATGATGTTAGCCACGATTTATCGCCGCAGTTTATTTAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTTTTAACGACGCCACCTTCTATGAAAAata                                                                    <  1:1963675/150‑1 (MQ=255)
                                                                                      gTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTa                                                                 >  1:476777/1‑150 (MQ=255)
                                                                                       tttAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTAc                                                                >  1:1155092/1‑150 (MQ=255)
                                                                                       tttAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTAc                                                                <  2:3328432/150‑1 (MQ=255)
                                                                                       tttAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTAc                                                                <  2:237746/150‑1 (MQ=255)
                                                                                        ttAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACg                                                               >  1:3284956/1‑150 (MQ=255)
                                                                                         tAGCGCAGGGGTGGACGTAGTGTTTCTCTCCACCGCGGATGATGTTAGCCTCGATTTAGCGCCTCAGTTTCTTGTAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTTTGAATAATATTACgg                                                              <  2:3070598/150‑1 (MQ=255)
                                                                                          aGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGc                                                             <  2:2399217/150‑1 (MQ=255)
                                                                                           gCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCt                                                            <  2:1386566/150‑1 (MQ=255)
                                                                                             ccAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCttt                                                          >  2:1492081/1‑150 (MQ=255)
                                                                                              cAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTa                                                         <  2:784513/150‑1 (MQ=255)
                                                                                                ggggTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTAcc                                                       >  1:2449148/1‑150 (MQ=255)
                                                                                                     ggACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCa                                                  >  1:741068/1‑150 (MQ=255)
                                                                                                       aCGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTGCTATGAAAAATATGACGGCTTTACCCCTCaag                                                >  2:4079157/1‑149 (MQ=255)
                                                                                                         gTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATAc                                              >  1:536833/1‑150 (MQ=255)
                                                                                                          tAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATAcc                                             >  2:3254541/1‑150 (MQ=255)
                                                                                                           aGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATAccc                                            >  1:2107475/1‑150 (MQ=255)
                                                                                                              gtTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGa                                         >  1:3466103/1‑150 (MQ=255)
                                                                                                               tttCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGaa                                        <  2:216819/150‑1 (MQ=255)
                                                                                                                   tcGCCACCGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGt                                    <  2:1919204/150‑1 (MQ=255)
                                                                                                                     gCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTg                                  <  1:1049322/150‑1 (MQ=255)
                                                                                                                     gCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTg                                  <  2:1565350/150‑1 (MQ=255)
                                                                                                                         ccGCCCATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAAc                              >  2:1640547/1‑150 (MQ=255)
                                                                                                                           gCCCATGAAGTGAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAg                            <  2:1110490/150‑1 (MQ=255)
                                                                                                                              cATGAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCa                         <  1:1808164/150‑1 (MQ=255)
                                                                                                                              cATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCa                         >  2:1230879/1‑150 (MQ=255)
                                                                                                                                 gAAGTTAGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGcc                      >  1:3760572/1‑150 (MQ=255)
                                                                                                                                       aGCCACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGt                >  1:2054796/1‑150 (MQ=255)
                                                                                                                                       aGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGt                >  1:1363131/1‑150 (MQ=255)
                                                                                                                                        gCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTc               >  2:2744659/1‑150 (MQ=255)
                                                                                                                                         ccACGATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCt              <  2:3967070/150‑1 (MQ=255)
                                                                                                                                           aCGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTgg            <  2:763774/150‑1 (MQ=255)
                                                                                                                                            cGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGc           <  1:2234973/150‑1 (MQ=255)
                                                                                                                                            cGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGc           >  1:1691688/1‑150 (MQ=255)
                                                                                                                                             gATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCg          <  2:1845842/150‑1 (MQ=255)
                                                                                                                                             gATTTAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCg          >  2:624292/1‑150 (MQ=255)
                                                                                                                                              aTTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCgg         <  2:3026258/150‑1 (MQ=255)
                                                                                                                                               tttAGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGa        >  2:1315443/1‑150 (MQ=255)
                                                                                                                                               tttAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGa        <  1:3079282/150‑1 (MQ=255)
                                                                                                                                                 tAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgt      <  1:1902023/150‑1 (MQ=255)
                                                                                                                                                 tAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgt      <  1:3259667/150‑1 (MQ=255)
                                                                                                                                                 tAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgt      <  1:1235109/150‑1 (MQ=255)
                                                                                                                                                  aGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgtg     >  2:3579675/1‑150 (MQ=255)
                                                                                                                                                  aGCTCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgtg     <  2:54987/150‑1 (MQ=255)
                                                                                                                                                  aGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgtg     <  1:559215/150‑1 (MQ=255)
                                                                                                                                                  aGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgtg     >  2:2953005/1‑150 (MQ=255)
                                                                                                                                                     gccgcAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTGTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAgtggtg  <  2:2017027/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GATGCGGGAAAGTTAATCTCCGATTTGCATCCGCAGCTAAAAGGCATCGTTGATCTGCCGTTGCAGCCGATGTCGGATATCAGCGAGTTTAGCCCAGGGGTGGACGTAGTGTTTCTCGCCACCGCCCATGAAGTTAGCCACGATTTAGCGCCGCAGTTTCTTGAAGCGGGCTGCGTGGTGTTCGACCTTTCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTG  >  CP009273/4145046‑4145344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A