Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F121 I0 R1
|
856 |
273.6 |
9081716 |
94.1% |
8545894 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,570,684 |
A→T |
20.1% |
I351I (ATT→ATA) |
maeB ← |
malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,570,684 | 0 | A | T | 20.1%
| 758.0
/ 175.8
| 298 | I351I (ATT→ATA) | maeB | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| Reads supporting (aligned to +/- strand): ref base A (118/119); new base T (25/34); total (144/154) |
| Fisher's exact test for biased strand distribution p-value = 3.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 304 total aligned reads displayed.
ATCGCGGCTTTAGCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAATGATGGCATCCGGAC > CP009273/2570535‑2570832
|
aTCGCGGCTTTAGCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCa > 1:2403568/1‑150 (MQ=255)
gcgGCTTTAGCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATc < 1:1621013/150‑1 (MQ=255)
cTTTAGCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCAc < 1:3358179/150‑1 (MQ=255)
aGCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTAc > 1:2256772/1‑150 (MQ=255)
aGCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCAGCATGGGCGAGTTCTGCAATCGCACGTAc > 1:1059718/1‑150 (MQ=255)
gCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTAcc < 1:519492/150‑1 (MQ=255)
gCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTAcc < 2:614375/150‑1 (MQ=255)
cGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTAccg > 1:2664843/1‑150 (MQ=255)
gCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCgccgcc < 1:4298584/150‑1 (MQ=255)
aGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAg < 1:2356414/150‑1 (MQ=255)
ggAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGt < 2:3784640/150‑1 (MQ=255)
aGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGttt > 1:297944/1‑150 (MQ=255)
gCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTc > 1:1602524/1‑150 (MQ=255)
ttAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATctct < 1:3405613/150‑1 (MQ=255)
tAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCtt < 2:1612350/150‑1 (MQ=255)
aaCGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTc < 1:2733521/150‑1 (MQ=255)
cGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGt > 2:5042/1‑150 (MQ=255)
cGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGt > 1:2531296/1‑150 (MQ=255)
aTCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTg > 1:349211/1‑150 (MQ=255)
cAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGAt > 2:1191424/1‑150 (MQ=255)
aGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATgg < 1:1929443/150‑1 (MQ=255)
aGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATgg > 1:766236/1‑150 (MQ=255)
cgcgGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTAGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCg > 2:691580/1‑150 (MQ=255)
ggATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGtt > 1:2826835/1‑150 (MQ=255)
ggATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGtt > 1:563818/1‑150 (MQ=255)
aaaCGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGcc < 2:4447777/150‑1 (MQ=255)
aaaCGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGcc > 1:934338/1‑150 (MQ=255)
aaCGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCa > 1:1499077/1‑150 (MQ=255)
aCGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCaa < 2:1787963/150‑1 (MQ=255)
ggTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACg > 1:3055299/1‑150 (MQ=255)
ttGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCa < 1:1877746/150‑1 (MQ=255)
ttGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCa < 1:1877916/150‑1 (MQ=255)
tGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAg > 1:1021420/1‑150 (MQ=255)
gAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAgcg > 2:4357406/1‑150 (MQ=255)
aaTGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAgcgc > 1:4311202/1‑150 (MQ=255)
atgatgTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAgcgcg < 2:2909313/150‑1 (MQ=255)
gTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACg < 1:3722366/150‑1 (MQ=255)
ttCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGaa > 2:2798893/1‑150 (MQ=255)
tCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAg < 2:2233438/150‑1 (MQ=255)
gACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGa < 2:1458759/150‑1 (MQ=255)
aCCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGaa > 2:1515587/1‑150 (MQ=255)
ccAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAAc > 2:2716283/1‑150 (MQ=255)
cAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACg < 2:728832/150‑1 (MQ=255)
aaGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACggg > 2:380450/1‑150 (MQ=255)
aaGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACggg > 2:1943286/1‑150 (MQ=255)
aaGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACggg > 1:176980/1‑150 (MQ=255)
aGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGa < 2:1895755/150‑1 (MQ=255)
aGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGa > 2:2430390/1‑150 (MQ=255)
tCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGc < 1:3863866/150‑1 (MQ=255)
aGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGcac > 2:363009/1‑150 (MQ=255)
aGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGcac > 2:2989512/1‑150 (MQ=255)
aGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGcac > 2:2344794/1‑150 (MQ=255)
gATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGcaca < 1:1810074/150‑1 (MQ=255)
gATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGcaca < 2:3377588/150‑1 (MQ=255)
gATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGcaca < 2:1404512/150‑1 (MQ=255)
aTCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAg > 2:3852536/1‑150 (MQ=255)
aTCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCCATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAg < 2:4179003/150‑1 (MQ=255)
aTCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAg > 2:4515524/1‑150 (MQ=255)
ccTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGa > 2:2950130/1‑150 (MQ=255)
ccTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGa > 2:2871085/1‑150 (MQ=255)
cATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCa > 2:4101114/1‑150 (MQ=255)
cATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCa > 2:335136/1‑150 (MQ=255)
tACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCAcc < 1:2785891/150‑1 (MQ=255)
ccGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCt < 2:4039574/149‑1 (MQ=255)
aCGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCt < 2:1064342/150‑1 (MQ=255)
aCGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCt > 2:3746483/1‑150 (MQ=255)
aCGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCt < 1:4487059/150‑1 (MQ=255)
aCGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCAGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGATGATGAACGGGAAGCACAGGACGTTGTTCACCt < 2:2218629/150‑1 (MQ=255)
cGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTg < 1:958070/150‑1 (MQ=255)
cTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGt > 2:3439818/1‑150 (MQ=255)
gCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGa > 1:3630482/1‑150 (MQ=255)
ccaccaCTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGAt < 2:2399887/150‑1 (MQ=255)
caccacTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATa > 2:2567844/1‑150 (MQ=255)
accacTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAg > 2:3511825/1‑150 (MQ=255)
accacTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAg > 1:2918987/1‑150 (MQ=255)
ccacTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGt < 1:1484297/150‑1 (MQ=255)
cacGTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTc < 2:1746844/150‑1 (MQ=255)
acTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCa < 2:1435074/150‑1 (MQ=255)
acTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCa < 2:2967370/150‑1 (MQ=255)
cTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAg > 1:3908872/1‑150 (MQ=255)
cGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAAc < 2:2619321/150‑1 (MQ=255)
cGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAAc > 1:1755511/1‑150 (MQ=255)
gCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACg > 1:3787257/1‑150 (MQ=255)
ctctGTTCCGCATGGGCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGa > 2:4480435/1‑150 (MQ=255)
ctctGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGa > 2:3454669/1‑150 (MQ=255)
tctGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGAc > 1:3307236/1‑150 (MQ=255)
ttCCGCTTGGGCGTTTTCTGAAAGCGCACTTACCGCCGCCATTTTCATCTCTTCGTTGATGGCGTTTGCGCCAACGTCCAGCGCGCCACGGAAGTTTAACGGTAAGCACAGGAGGTTGTTCACCTGGTTCGTATAGTCAGAACGACCGGt < 2:2299782/150‑1 (MQ=255)
cGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGACCGACCGGTGCa > 2:925986/1‑150 (MQ=255)
cGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCa > 1:2574539/1‑150 (MQ=255)
aTGGGCGAGTTCTGCTATCGCACTTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATTAACGGGAAGCACAGGACTTTTTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAat < 2:4316293/150‑1 (MQ=255)
tGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAatg > 1:3980820/1‑150 (MQ=255)
ggggtgTTCTGCTATCGCCCGTACCGCCGCCAGTTTAATCTCTTCGTTGTTGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAatgat < 1:4531264/145‑1 (MQ=255)
ggCGAGTTCTGCTATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAatgat < 2:2156390/150‑1 (MQ=255)
aGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAATGATGGCa < 2:2032947/150‑1 (MQ=255)
aGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAATGATGGCa > 2:3664472/1‑150 (MQ=255)
tttCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAATATGAACGGTAAGCACAGGACGTTGTTCACCTGGTTCGGATCGTCAGAACGACCGGTGCAAATGATGGCAt < 1:715501/149‑1 (MQ=255)
gTTCTGCATTCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGTTGGCGGTTGCGCCAACGTCCCGCGCGCCACGGAATATGAAGGGGACGCACTGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAATGATGGCAt < 1:319653/150‑1 (MQ=255)
gTTCTCAAATCGCACTTACCGCCGCCAGTTTAATCTCTTCGTTGATGGCGGTTGCGCAAACGACCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGTATAGACAGAACGACCGGTGCAAATGATGGCAt < 2:1222183/150‑1 (MQ=255)
cAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGACCGACCGGTGCAAATGATGGCATCCGGAc > 2:3088050/1‑150 (MQ=255)
aaaTCGCACGTACCGCCGCCAGTTTCATCTCTTCTTTTTTGGGGGTTGCGCCAACGTCCCGCGCGCCCCGGAAGATGAAGGGGAAGCACAGGAGTTTGTTCACCTGGTTCGTATAGTCAGAACGACCGGTGCAAATGATGGCATCCGGAc < 1:2304235/149‑1 (MQ=255)
|
ATCGCGGCTTTAGCGACCGCAGGAGCGATCTTAACGATCAAGCGCGGATCAAACGGTTTTGGAATGATGTATTCCGGACCAAAGCTCAGATCCTGATCGCCATACGCTGAAGCCACCACTTCGCTCTGTTCCGCATGGGCGAGTTCTGCAATCGCACGTACCGCCGCCAGTTTCATCTCTTCGTTGATGGCGGTTGCGCCAACGTCCAGCGCGCCACGGAAGATGAACGGGAAGCACAGGACGTTGTTCACCTGGTTCGGATAGTCAGAACGACCGGTGCAAATGATGGCATCCGGAC > CP009273/2570535‑2570832
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
