Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F52 I0 R1
|
779 |
320.1 |
10410758 |
96.6% |
10056792 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,983,868 |
G→T |
19.2% |
intergenic (‑149/‑45) |
yqeK ← / → ygeF |
uncharacterized protein/pseudogene |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,983,868 | 0 | G | T | 19.2%
| 696.8
/ 138.3
| 250 | intergenic (‑149/‑45) | yqeK/ygeF | uncharacterized protein/pseudogene |
| Reads supporting (aligned to +/- strand): ref base G (97/105); new base T (25/23); total (122/128) |
| Fisher's exact test for biased strand distribution p-value = 6.33e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.32e-01 |
Only 100 of 252 total aligned reads displayed.
TGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTAATCCAGTTA > CP009273/2983720‑2984015
|
tGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg < 2:3981910/149‑1 (MQ=255)
tGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg < 2:1385161/149‑1 (MQ=255)
tataCCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATCAGGTGATATTTGACATTATCAGACGCt > 2:1126539/1‑149 (MQ=255)
tataCCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCt > 2:3722606/1‑149 (MQ=255)
taCCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGc > 2:319069/1‑149 (MQ=255)
taCCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGc < 1:3246262/149‑1 (MQ=255)
ccTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGa > 1:135853/1‑149 (MQ=255)
cTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGaa < 1:748469/149‑1 (MQ=255)
cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAAtt < 1:4799181/149‑1 (MQ=255)
caTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCg > 1:1302739/1‑149 (MQ=255)
aTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGTGAATTCgg > 2:2046250/1‑149 (MQ=255)
aTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCgg > 2:4887551/1‑149 (MQ=255)
aTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCgg > 1:2759115/1‑149 (MQ=255)
tttACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGAtt < 2:1840720/149‑1 (MQ=255)
tttACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAtt < 1:3088266/149‑1 (MQ=255)
ttACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAttt < 1:4972901/149‑1 (MQ=255)
cGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGct < 2:901969/149‑1 (MQ=255)
gTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGctc < 1:1237022/149‑1 (MQ=255)
aCTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTaa < 2:2200263/149‑1 (MQ=255)
aCTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTaa > 1:599166/1‑149 (MQ=255)
gATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCaa < 2:5040295/149‑1 (MQ=255)
aTGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCaaa > 2:188693/1‑149 (MQ=255)
aTGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCaaa < 1:5175330/149‑1 (MQ=255)
tGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAGAt > 2:4701929/1‑149 (MQ=255)
tGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAAt < 2:2744017/149‑1 (MQ=255)
gTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATg > 2:3244293/1‑149 (MQ=255)
aCTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATgaga > 1:3462872/1‑149 (MQ=255)
cTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTATACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATgagag < 2:3574696/149‑1 (MQ=255)
tGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATgagaga > 2:1069200/1‑149 (MQ=255)
tGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATgagaga < 1:1253791/149‑1 (MQ=255)
gTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGaa < 2:1900900/149‑1 (MQ=255)
ttCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGaaa < 2:1960963/149‑1 (MQ=255)
cAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATg < 1:2941412/149‑1 (MQ=255)
taatCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTaa < 2:1101934/149‑1 (MQ=255)
aatCACCTTACATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTaaa < 2:5114129/149‑1 (MQ=255)
ttCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGc > 2:697175/1‑149 (MQ=255)
aTACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAat < 1:2902051/149‑1 (MQ=255)
tACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAata < 1:2612069/149‑1 (MQ=255)
aCTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAatat < 1:3878694/149‑1 (MQ=255)
cTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATAtt < 2:4483564/149‑1 (MQ=255)
aaaaTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaa < 1:798178/149‑1 (MQ=255)
aaaaTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaa < 1:4119361/149‑1 (MQ=255)
aaaTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaat < 1:5017111/149‑1 (MQ=255)
aaTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaata > 1:2137025/1‑149 (MQ=255)
aTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa > 2:158442/1‑149 (MQ=255)
aTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa > 1:4227245/1‑149 (MQ=255)
aTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa < 1:1690171/149‑1 (MQ=255)
aTTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa > 2:4382805/1‑149 (MQ=255)
tAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAataata < 2:1330271/149‑1 (MQ=255)
aTACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGc > 1:4027733/1‑149 (MQ=255)
aTACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGc > 1:1064328/1‑149 (MQ=255)
tACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGcc < 1:1331984/149‑1 (MQ=255)
cccTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTAc < 1:3395889/149‑1 (MQ=255)
tAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCAc < 1:2153708/149‑1 (MQ=255)
gtgCCGATGACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCa > 1:3566774/1‑149 (MQ=255)
gCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAAc > 1:3789995/1‑149 (MQ=255)
ccGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAAcc < 1:188693/149‑1 (MQ=255)
gATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCAt > 2:1475573/1‑149 (MQ=255)
aTAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCAtt > 1:1198165/1‑149 (MQ=255)
tAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTa < 1:4495484/149‑1 (MQ=255)
aaCAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAg > 2:4138495/1‑149 (MQ=255)
aCAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGt < 2:2175466/149‑1 (MQ=255)
taGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGAt < 2:5135641/149‑1 (MQ=255)
aGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATc < 2:5191499/149‑1 (MQ=255)
gTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCa < 1:2371417/149‑1 (MQ=255)
tCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATATTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAg > 2:1477581/1‑149 (MQ=255)
ttCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGgag < 2:159882/149‑1 (MQ=255)
tACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAAc > 1:1804537/1‑149 (MQ=255)
cGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACaa < 2:4732256/149‑1 (MQ=255)
tAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACaaaa < 2:3311150/149‑1 (MQ=255)
aCGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAAt < 2:755834/149‑1 (MQ=255)
gTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATaa < 2:552552/149‑1 (MQ=255)
gTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATaa < 2:4686732/149‑1 (MQ=255)
caccATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGa > 2:1699000/3‑149 (MQ=255)
tcCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGaa > 1:4325894/1‑149 (MQ=255)
aTAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGaaaaa < 1:1513353/149‑1 (MQ=255)
ttattttatatTTGACATTATCAGAAGCTGAGAATTCTGATTTTTCTCTAATAAAATGAGAGATATGTAAAATGAAGCCACTAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAAt < 2:3791094/142‑1 (MQ=255)
aaGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATg > 1:1921015/1‑149 (MQ=255)
aGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGa > 1:3354277/1‑149 (MQ=255)
aGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCCACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGa < 1:2005599/149‑1 (MQ=255)
gATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAagag > 1:3018286/1‑149 (MQ=255)
gATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAagag < 1:5105649/149‑1 (MQ=255)
atatTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAgaga < 2:3054833/149‑1 (MQ=255)
tttGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAAt < 2:3442224/149‑1 (MQ=255)
tttGACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAAt < 2:2947276/149‑1 (MQ=255)
ttGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATc < 2:3566774/149‑1 (MQ=255)
tGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATcc > 2:2892527/1‑149 (MQ=255)
tGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATcc < 2:4704084/149‑1 (MQ=255)
gACATTATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCg < 2:418045/149‑1 (MQ=255)
gACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCg < 1:3076075/149‑1 (MQ=255)
gACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCg > 1:1989110/1‑149 (MQ=255)
cATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGtt < 2:268697/149‑1 (MQ=255)
aTTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTa < 2:136274/149‑1 (MQ=255)
ttATCAGAATCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTaa < 2:273352/149‑1 (MQ=255)
tCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTAATcc > 2:3901041/1‑149 (MQ=255)
tCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTAATcc < 1:4237177/149‑1 (MQ=255)
cAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTAATCCa > 2:4970602/1‑149 (MQ=255)
aGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTAATCCAg < 1:4728546/149‑1 (MQ=255)
gAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGACGAGAAATCCGTTAATCCAGt > 2:4598461/1‑149 (MQ=255)
aGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTAATCCAGTTa < 2:2377839/149‑1 (MQ=255)
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TGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATTAGTTCCTGATCAGGAGAACAAAAATAAGAAAAATGAAGAGAAATCCGTTAATCCAGTTA > CP009273/2983720‑2984015
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
