Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F368 I0 R1
|
1472 |
214.4 |
7116750 |
95.9% |
6824963 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,022,562 |
C→T |
100% |
G577R (GGA→AGA) |
ygfT ← |
putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,022,562 | 0 | C | T | 97.8%
| 583.7
/ 2.5
| 179 | G577R (GGA→AGA) | ygfT | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base C (3/1); new base T (86/89); total (89/90) |
| Fisher's exact test for biased strand distribution p-value = 3.68e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 180 total aligned reads displayed.
TGCCTTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTACGAA > CP009273/3022417‑3022705
|
gcctTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCt > 2:2806563/1‑148 (MQ=255)
gcctTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCt > 2:2806844/1‑148 (MQ=255)
tCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGccc < 1:2715080/148‑1 (MQ=255)
tCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGccc < 2:1176006/148‑1 (MQ=255)
cTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTg < 2:553905/148‑1 (MQ=255)
ccATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCa < 2:1847738/148‑1 (MQ=255)
ccATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCa < 1:2873269/148‑1 (MQ=255)
ccATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCa < 2:2974673/148‑1 (MQ=255)
gCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACggca < 1:2156286/148‑1 (MQ=255)
gTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACggcatgg < 1:3519954/148‑1 (MQ=255)
tGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACggcatggc > 2:2119347/1‑148 (MQ=255)
aCAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACggcatggcat < 1:651082/148‑1 (MQ=255)
cAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGACTCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGgcatggcatg < 2:2122077/148‑1 (MQ=255)
aTCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTgg > 1:2513706/1‑148 (MQ=255)
ccGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGaa < 1:674212/148‑1 (MQ=255)
cgcgCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGaaa > 1:2688058/1‑148 (MQ=255)
cATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCaaa < 2:1634406/148‑1 (MQ=255)
cATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCaaa < 2:1674891/148‑1 (MQ=255)
aTGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAg > 2:1798291/1‑148 (MQ=255)
tGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAgg > 1:1328131/1‑148 (MQ=255)
gAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGc < 2:2049818/148‑1 (MQ=255)
gAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGc > 1:992495/1‑148 (MQ=255)
gAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGc < 2:3010686/148‑1 (MQ=255)
cTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCAt > 1:3351259/1‑148 (MQ=255)
gCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTTCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATaa < 2:2488159/148‑1 (MQ=255)
tCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCa > 1:1496616/1‑148 (MQ=255)
caccacCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAACGGCCATAATCAg > 1:609256/1‑148 (MQ=255)
caccacCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAg > 1:3018447/1‑148 (MQ=255)
caccacCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAg > 1:1848056/1‑148 (MQ=255)
caccacCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAg > 2:3243784/1‑148 (MQ=255)
accaccAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGa < 2:237725/148‑1 (MQ=255)
accaccAGCAAAGACTTTTTTCAGAGGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGa < 2:2882175/148‑1 (MQ=255)
ccaccaGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGaa > 1:3422763/1‑148 (MQ=255)
ccaccaGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGaa < 2:2752502/148‑1 (MQ=255)
ccaccaGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGaa > 1:1033216/1‑148 (MQ=255)
ccaGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACAt < 2:1062584/148‑1 (MQ=255)
gCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATcgg < 2:2003676/148‑1 (MQ=255)
gCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATcgg > 1:2722050/1‑148 (MQ=255)
gCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAACCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATcgg < 2:1609675/148‑1 (MQ=255)
aaaGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATcggcg > 1:929513/1‑148 (MQ=255)
aaaGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAACCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATcggcg < 2:2143059/148‑1 (MQ=255)
aaaGACTATTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATcggcg < 2:1105777/148‑1 (MQ=255)
aaGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATcggcgg > 1:828912/1‑148 (MQ=255)
aGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCACAGGCCATAATCAGAACATCGGCggg > 1:1130880/1‑148 (MQ=255)
aGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCggg > 1:2354956/1‑148 (MQ=255)
aCTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCa > 1:933815/1‑148 (MQ=255)
cTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCaa < 1:3258422/148‑1 (MQ=255)
tttttCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAAtt > 1:173587/1‑148 (MQ=255)
ttCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCaa < 2:3167307/148‑1 (MQ=255)
tCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCaaa < 2:582183/148‑1 (MQ=255)
aTGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCACAGGCCATAATCAGAACATCGGCGGGCAATTCAAActct > 2:3146443/1‑148 (MQ=255)
aTGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAActct > 1:331960/1‑148 (MQ=255)
aTGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAActct > 1:2123401/1‑148 (MQ=255)
aTGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTATGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACTGCATGGCATGCGCCTGGAAAACAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAActct > 2:2560783/1‑148 (MQ=255)
tGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTg > 2:825163/1‑148 (MQ=255)
tGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTg < 2:117341/148‑1 (MQ=255)
gCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGa < 2:3492598/148‑1 (MQ=255)
gCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGa < 2:3492608/148‑1 (MQ=255)
cGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGaa > 2:2971138/1‑148 (MQ=255)
gTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAAc < 2:698245/148‑1 (MQ=255)
tCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAAcc < 1:1878369/148‑1 (MQ=255)
tCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCAATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAAcc < 1:1875551/148‑1 (MQ=255)
tGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCg < 2:468502/148‑1 (MQ=255)
tGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCg < 2:2688058/148‑1 (MQ=255)
gggTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGc > 1:176657/1‑148 (MQ=255)
gtaggtaAATACCCGACGTCACAGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTa < 1:1396199/148‑1 (MQ=255)
taggtaAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTAc < 2:364123/148‑1 (MQ=255)
taggtaAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTAc > 1:3235423/1‑148 (MQ=255)
taggtaAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTAc > 1:3219531/1‑148 (MQ=255)
ggtaAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCg > 2:493669/1‑148 (MQ=255)
gtaAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCgg < 2:3177990/148‑1 (MQ=255)
gtaAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCgg > 2:1829543/1‑148 (MQ=255)
taAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCgga > 1:2363950/1‑148 (MQ=255)
aTACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCggacga < 1:383592/148‑1 (MQ=255)
aTACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCggacga < 1:383587/148‑1 (MQ=255)
cccGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCggacgagga > 1:1999626/1‑148 (MQ=255)
gACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCggacgaggacga < 2:3485056/148‑1 (MQ=255)
aCGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGgacgac > 1:2932205/1‑148 (MQ=255)
aCGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGgacgac > 1:1224442/1‑148 (MQ=255)
gTCACCGGTTTGAATCAGGCCCCTTTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACgg < 2:1481557/148‑1 (MQ=255)
cACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCg > 2:3265812/1‑148 (MQ=255)
ccGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCATAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGAc > 1:1415998/1‑148 (MQ=255)
ccGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGAc > 1:219942/1‑148 (MQ=255)
ggTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCa < 1:2288288/148‑1 (MQ=255)
tttGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATc > 1:513717/1‑148 (MQ=255)
gAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCgg < 1:2907295/148‑1 (MQ=255)
tCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGccc > 2:2172604/1‑148 (MQ=255)
tCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGccc > 2:3517693/1‑148 (MQ=255)
aGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCg > 2:283482/1‑148 (MQ=255)
gCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGc < 2:3422763/148‑1 (MQ=255)
gCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGc < 2:1033216/148‑1 (MQ=255)
cATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCAc > 2:1015616/1‑148 (MQ=255)
cATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCAc > 2:1827549/1‑148 (MQ=255)
cATTTATCGAGTTTAATTCTGATGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCAc > 2:1269781/1‑148 (MQ=255)
tttATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCAccc > 2:824184/1‑148 (MQ=255)
ttATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAAGCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCAcccc > 2:1886022/1‑147 (MQ=255)
tATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCAt > 1:559578/1‑148 (MQ=255)
gTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGt < 2:1898230/148‑1 (MQ=255)
tttAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTa > 1:502164/1‑148 (MQ=255)
aTTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTACGaa < 2:2750965/148‑1 (MQ=255)
|
TGCCTTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTACGAA > CP009273/3022417‑3022705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCTGCCTTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTACGAATC > CP009273/3022413‑3022707
|
CGCCTGCCTTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCT < SRR19973067.835717/150‑1 (MQ=60)
CGCCTGCCTTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCT < SRR19973067.3460898/150‑1 (MQ=60)
CCTGCCTTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGC > SRR19973067.366652/1‑150 (MQ=60)
TCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTG < SRR19973067.2732579/150‑1 (MQ=60)
CCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGC > SRR19973067.1879437/1‑150 (MQ=60)
CCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGC > SRR19973067.1304252/1‑150 (MQ=60)
GCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCAC < SRR19973067.2755529/150‑1 (MQ=60)
CCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACG < SRR19973067.2891651/150‑1 (MQ=60)
CATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGG > SRR19973067.3317337/1‑150 (MQ=60)
ATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGC < SRR19973067.505653/150‑1 (MQ=60)
GCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATG < SRR19973067.2170707/150‑1 (MQ=60)
GCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATA < SRR19973067.2170710/150‑1 (MQ=60)
GTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCA < SRR19973067.3542224/150‑1 (MQ=60)
ACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGC < SRR19973067.655499/150‑1 (MQ=60)
AGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGG > SRR19973067.2530191/1‑150 (MQ=60)
TCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAA > SRR19973067.2705311/1‑150 (MQ=60)
CCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAAC < SRR19973067.678844/150‑1 (MQ=60)
CATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGG > SRR19973067.1337191/1‑150 (MQ=60)
CATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGG < SRR19973067.1934504/150‑1 (MQ=60)
ATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGC > SRR19973067.999326/1‑150 (MQ=60)
GAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCA > SRR19973067.635937/1‑150 (MQ=60)
AACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCAT > SRR19973067.3372511/1‑150 (MQ=60)
TGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAAT < SRR19973067.2895306/150‑1 (MQ=60)
CATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCA > SRR19973067.1506486/1‑150 (MQ=60)
ATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAACGGCCATAATCAG > SRR19973067.613189/1‑150 (MQ=60)
ATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAG > SRR19973067.3037664/1‑150 (MQ=60)
ATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAG < SRR19973067.3423078/150‑1 (MQ=60)
ATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAG > SRR19973067.1860652/1‑150 (MQ=60)
TCACCACGATCAAAGACTTTTTTCAGATGCGTCTGTGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTTTCGAGTTTAATTCTGCTGCCCTGCAACCTCGGCATGGCATGCGACTGGAAACCAAAGGCCATTATCAGA < SRR19973067.1740070/150‑1 (MQ=60)
CACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAA > SRR19973067.1040332/1‑150 (MQ=60)
CACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAA > SRR19973067.3444546/1‑150 (MQ=60)
CAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGG > SRR19973067.2739608/1‑150 (MQ=60)
CAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGG > SRR19973067.2739522/1‑150 (MQ=60)
GCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCG > SRR19973067.935795/1‑150 (MQ=60)
GCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCG > SRR19973067.2340104/1‑150 (MQ=60)
GCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCG > SRR19973067.939098/1‑150 (MQ=60)
CAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGG > SRR19973067.556122/1‑150 (MQ=60)
CAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGG > SRR19973067.834564/1‑150 (MQ=60)
CAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGG > SRR19973067.2053452/1‑150 (MQ=60)
AAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCACAGGCCATAATCAGAACATCGGCGGG > SRR19973067.1138509/1‑150 (MQ=60)
AAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGG > SRR19973067.2370318/1‑150 (MQ=60)
AAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGC > SRR19973067.2145297/1‑150 (MQ=60)
AAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGC > SRR19973067.3198099/1‑150 (MQ=60)
AGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCA > SRR19973067.940149/1‑150 (MQ=60)
AGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGCTTTGAATCAGGCCCCATTAATCGAGTTTAATACTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGACCATAATCAGAACATCGGCGGGCA > SRR19973067.940156/1‑150 (MQ=60)
ACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAAT < SRR19973067.1378839/150‑1 (MQ=60)
CTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATT < SRR19973067.3278784/150‑1 (MQ=60)
CTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATT < SRR19973067.3278529/150‑1 (MQ=60)
CTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATT > SRR19973067.174985/1‑150 (MQ=60)
CTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTAGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATT < SRR19973067.690640/150‑1 (MQ=60)
AGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCT > SRR19973067.2137569/1‑150 (MQ=60)
AGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCT > SRR19973067.334230/1‑150 (MQ=60)
TCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCG < SRR19973067.1891181/150‑1 (MQ=60)
TCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCAATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCG < SRR19973067.1888349/150‑1 (MQ=60)
CTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGC > SRR19973067.178070/1‑150 (MQ=60)
CTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGC > SRR19973067.178065/1‑150 (MQ=60)
GGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTAC > SRR19973067.3239777/1‑150 (MQ=60)
GGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTAC > SRR19973067.1166506/1‑150 (MQ=60)
GGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTAC < SRR19973067.2696147/150‑1 (MQ=60)
GGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTAC > SRR19973067.3255717/1‑150 (MQ=60)
GTAGGTAAATACCCGACGTCACAGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACC < SRR19973067.1405680/150‑1 (MQ=60)
GGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAACGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGA > SRR19973067.925192/1‑150 (MQ=60)
GGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGA > SRR19973067.2379349/1‑150 (MQ=60)
TAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACG < SRR19973067.3242615/150‑1 (MQ=60)
AAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGA > SRR19973067.2378368/1‑150 (MQ=60)
ATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGG < SRR19973067.386258/150‑1 (MQ=60)
ATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGG < SRR19973067.386263/150‑1 (MQ=60)
TACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGA > SRR19973067.2013118/1‑150 (MQ=60)
atctGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGAC < SRR19973067.346920/146‑1 (MQ=60)
CGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGAC > SRR19973067.2950823/1‑150 (MQ=60)
CGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGAC > SRR19973067.1232609/1‑150 (MQ=60)
GTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCG > SRR19973067.1850657/1‑150 (MQ=60)
CACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCATAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGAC > SRR19973067.1425577/1‑150 (MQ=60)
CACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGAC > SRR19973067.2427785/1‑150 (MQ=60)
CACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGAC > SRR19973067.221552/1‑150 (MQ=60)
CACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGAC > SRR19973067.1425424/1‑150 (MQ=60)
CACCGGTTTGAATCAGGCCCCATTTATAGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAAACAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTCAACCCGCTACCGGACGAGGACGACGGCGAC > SRR19973067.499299/1‑150 (MQ=60)
GGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATC > SRR19973067.517210/1‑150 (MQ=60)
GGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATC < SRR19973067.2303413/150‑1 (MQ=60)
GAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCC < SRR19973067.2925853/150‑1 (MQ=60)
GAATCAGGCCCCATTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCC < SRR19973067.2925822/150‑1 (MQ=60)
TTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCAT > SRR19973067.563241/1‑150 (MQ=60)
TTTATCGAGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCAT > SRR19973067.563238/1‑150 (MQ=60)
AGTTTAATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTA > SRR19973067.505608/1‑150 (MQ=60)
ATTCTGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTACGAATC > SRR19973067.1323279/1‑150 (MQ=60)
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CGCCTGCCTTCCTGCGGCCATTGCAGTGACAACCAGATCCGCGCCATGAACTGCATCACCACCAGCAAAGACTTTTTTCAGATGCGTCTGGGTAGGTAAATACCCGACGTCACCGGTTTGAATCAGGCCCCATTTATCGAGTTTAATTCCGCTGCCCTGCAACCACGGCATGGCATGCGCCTGGAAACCAAAGGCCATAATCAGAACATCGGCGGGCAATTCAAACTCTGAACCCGCTACCGGACGAGGACGACGGCGACCATCCGGCCCCGGCTCACCCATGGCGGTACGAATC > CP009273/3022413‑3022707
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |