Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F394 I0 R1
|
1342 |
215.0 |
7134094 |
96.2% |
6862998 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,628,166 |
G→T |
26.7% |
A192A (GCG→GCT) |
xseA → |
exonuclease VII, large subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,628,166 | 0 | G | T | 26.7%
| 480.4
/ 137.9
| 217 | A192A (GCG→GCT) | xseA | exonuclease VII, large subunit |
| Reads supporting (aligned to +/- strand): ref base G (73/86); new base T (28/30); total (101/116) |
| Fisher's exact test for biased strand distribution p-value = 7.61e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
Only 100 of 221 total aligned reads displayed.
TGTGATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACGGAT > CP009273/2628019‑2628313
|
tgtgATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCg > 1:1154058/1‑148 (MQ=255)
tgATCACCTCAAACACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGaa < 1:1336854/148‑1 (MQ=255)
tgATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTaa > 2:2325630/1‑148 (MQ=255)
gATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAAt > 1:52784/1‑148 (MQ=255)
gATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAAt < 1:1526539/148‑1 (MQ=255)
aTCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATc > 2:334972/1‑148 (MQ=255)
tCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCa < 2:2933681/148‑1 (MQ=255)
ccTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAgcg < 1:2951909/148‑1 (MQ=255)
cTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAgcgc < 2:2566951/148‑1 (MQ=255)
tCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCa < 2:881565/148‑1 (MQ=255)
cAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCaa < 1:3071423/148‑1 (MQ=255)
cAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCaa < 2:346670/148‑1 (MQ=255)
cAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCaa < 2:2286875/148‑1 (MQ=255)
aaaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATg > 1:2967396/1‑148 (MQ=255)
aaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGa < 1:3136072/148‑1 (MQ=255)
aaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGa > 1:2854265/1‑148 (MQ=255)
aaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGa > 2:151545/1‑148 (MQ=255)
ccGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTg > 1:1527156/1‑148 (MQ=255)
cGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGc > 2:2893419/1‑148 (MQ=255)
ggTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCg < 1:641823/148‑1 (MQ=255)
tgctgcGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGAc > 1:2164664/1‑148 (MQ=255)
cTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGa > 1:1236481/1‑148 (MQ=255)
tACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGAt > 2:725514/1‑148 (MQ=255)
aCATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGAtc < 2:3409412/148‑1 (MQ=255)
aCATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGAtc > 2:148108/1‑148 (MQ=255)
aCATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGAtc > 2:1263212/1‑148 (MQ=255)
cATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGAtcg < 2:1419899/148‑1 (MQ=255)
tGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGAtcgtc < 1:1905314/148‑1 (MQ=255)
tttGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGgcgc > 1:1567673/1‑148 (MQ=255)
tttGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGgcgc > 2:2792859/1‑148 (MQ=255)
gCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCgcggc > 2:1489256/1‑148 (MQ=255)
gtgtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCgcggcggcg > 1:2015855/1‑148 (MQ=255)
gtgtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCgcggcggcg < 1:1126254/148‑1 (MQ=255)
tgtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGcggcggcgg < 1:96969/148‑1 (MQ=255)
gtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGt < 1:3544016/148‑1 (MQ=255)
ttAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGtt > 1:1572421/1‑148 (MQ=255)
aaaaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCg < 1:2274627/148‑1 (MQ=255)
aaaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGc > 2:1346749/1‑148 (MQ=255)
aaaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGc > 1:3483799/1‑148 (MQ=255)
aaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCt > 2:1081226/1‑148 (MQ=255)
aaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCt < 2:1940840/148‑1 (MQ=255)
aaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCt < 1:849443/148‑1 (MQ=255)
cgcgATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAg < 1:335002/148‑1 (MQ=255)
cgATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGAt > 1:2440766/1‑148 (MQ=255)
aTCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGAttt < 2:1384079/148‑1 (MQ=255)
tCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTa < 1:3161201/148‑1 (MQ=255)
tCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTa > 1:1785741/1‑148 (MQ=255)
ttCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCACTGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATgg > 2:2857170/1‑148 (MQ=255)
ttCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATgg < 1:2325630/148‑1 (MQ=255)
ttCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATgg < 1:1382145/148‑1 (MQ=255)
tctcTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGa < 2:1986624/148‑1 (MQ=255)
tctGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGt < 1:225357/148‑1 (MQ=255)
tctGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGt < 1:2694564/148‑1 (MQ=255)
ctGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGtt < 1:782729/148‑1 (MQ=255)
ccGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTa < 2:386949/148‑1 (MQ=255)
cGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTaa < 2:824031/148‑1 (MQ=255)
ggTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAac > 1:1158157/1‑148 (MQ=255)
ggTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAac > 1:1197738/1‑148 (MQ=255)
catcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGaa > 1:3284448/1‑148 (MQ=255)
catcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGaa < 1:1070701/148‑1 (MQ=255)
tcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAAcg > 2:2502409/1‑148 (MQ=255)
tcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAAcg > 1:1601732/1‑148 (MQ=255)
aCCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGACGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGt < 1:3089522/148‑1 (MQ=255)
ccTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTTTTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAg < 1:757883/148‑1 (MQ=255)
tGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAgcg < 2:1661926/148‑1 (MQ=255)
cggccgTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGcgcg > 2:1959893/3‑148 (MQ=255)
cgccgTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCgg > 1:1257894/1‑148 (MQ=255)
cgTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCg > 1:3227579/1‑148 (MQ=255)
ttCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAt < 2:3169798/148‑1 (MQ=255)
tCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAtt > 1:3134196/1‑148 (MQ=255)
tCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAtt > 1:85600/1‑148 (MQ=255)
cAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAttt < 1:11141/148‑1 (MQ=255)
ggCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTa < 2:361250/148‑1 (MQ=255)
gATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCa < 2:1431945/148‑1 (MQ=255)
aTGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAg < 2:1158157/148‑1 (MQ=255)
aTGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAg < 2:1197738/148‑1 (MQ=255)
tGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGc < 1:1898288/148‑1 (MQ=255)
tGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGc > 2:2695877/1‑148 (MQ=255)
cGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTcc > 1:658352/1‑148 (MQ=255)
ggCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGt > 1:2733758/1‑148 (MQ=255)
gCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGtt < 1:2862951/148‑1 (MQ=255)
aaaTTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGt < 2:2438335/148‑1 (MQ=255)
aaaTTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGt < 2:644962/148‑1 (MQ=255)
aaTTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTc < 2:1527183/148‑1 (MQ=255)
aaTTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTc < 1:2370887/148‑1 (MQ=255)
aaTTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACTAGCCGCATTCCGGTTGTc < 2:326788/148‑1 (MQ=255)
ttGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAg < 1:1733815/148‑1 (MQ=255)
tGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAgc > 2:3080134/1‑148 (MQ=255)
tGTTCGCGCCATTGAACTGGCGAATCAGCGCAAAGAGTGCGACTGATTGATCGTCGGGCGCTGCGGCGGTTAGCTGGAAGATTTATGGAGTTTTAACGACGAACTCGTAGCGAGGGCGATATTTACCAGCCGCATTCCGGTTGTCAgc > 2:2383463/1‑148 (MQ=255)
ttCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAgcgc < 2:1773542/148‑1 (MQ=255)
cgcCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTc > 2:766677/1‑148 (MQ=255)
ttGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCa > 2:2522386/1‑148 (MQ=255)
aaCTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATga > 2:3499835/1‑148 (MQ=255)
aaCTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATga > 1:1505481/1‑148 (MQ=255)
aCTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATgag < 2:1154058/148‑1 (MQ=255)
cTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATgaga > 2:1928480/1‑148 (MQ=255)
gCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACgg > 2:470458/1‑148 (MQ=255)
gCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACgg < 2:621963/148‑1 (MQ=255)
gCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACgg < 1:2502409/148‑1 (MQ=255)
gAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACGGAt < 1:679695/148‑1 (MQ=255)
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TGTGATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACGGAT > CP009273/2628019‑2628313
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
