Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F342 I0 R1
|
1331 |
225.9 |
7641038 |
95.8% |
7320114 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,628,166 |
G→T |
15.0% |
A192A (GCG→GCT) |
xseA → |
exonuclease VII, large subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,628,166 | 0 | G | T | 15.0%
| 734.7
/ 71.3
| 238 | A192A (GCG→GCT) | xseA | exonuclease VII, large subunit |
| Reads supporting (aligned to +/- strand): ref base G (101/101); new base T (16/20); total (117/121) |
| Fisher's exact test for biased strand distribution p-value = 5.90e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 241 total aligned reads displayed.
TGTGATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACGGAT > CP009273/2628019‑2628313
|
gtgATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGa > 2:474000/1‑148 (MQ=255)
gtgATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGa > 2:473961/1‑148 (MQ=255)
aTCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATc < 2:3253538/148‑1 (MQ=255)
aTCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATc < 2:3253236/148‑1 (MQ=255)
tCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCa > 2:2786786/1‑148 (MQ=255)
tCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCa > 2:1031211/1‑148 (MQ=255)
tCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCa > 1:2477470/1‑148 (MQ=255)
tCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCa > 1:2352561/1‑148 (MQ=255)
aCCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAgc < 1:1101908/148‑1 (MQ=255)
aaaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATg < 2:152040/148‑1 (MQ=255)
aaaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATg < 1:2967744/148‑1 (MQ=255)
aaaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATg > 1:1984889/1‑148 (MQ=255)
aaaCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGa > 2:3125950/1‑148 (MQ=255)
aCCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGt > 1:1737874/1‑148 (MQ=255)
ctgcGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGt < 1:3609911/148‑1 (MQ=255)
tgcGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTa < 1:1019932/148‑1 (MQ=255)
gcgcTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTAt < 2:805716/148‑1 (MQ=255)
gcgcTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTAt < 1:922941/148‑1 (MQ=255)
gcTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTg > 2:2604120/1‑148 (MQ=255)
cTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGa < 1:760748/148‑1 (MQ=255)
cTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGa < 1:1178260/148‑1 (MQ=255)
cTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGa < 2:632582/148‑1 (MQ=255)
aCATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGAtc > 1:2676937/1‑148 (MQ=255)
cATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGAtcg < 2:1318870/148‑1 (MQ=255)
aTGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGAtcgt > 2:531599/1‑148 (MQ=255)
gATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGAtcgtcg > 1:3438101/1‑148 (MQ=255)
tatTTTGCATGTGTTACAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCggg < 2:216697/148‑1 (MQ=255)
tatTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCggg < 1:3378326/148‑1 (MQ=255)
atTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGgc > 1:1830447/1‑148 (MQ=255)
tttGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGgcgc > 1:2854581/1‑148 (MQ=255)
tgtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGcggcggcgg > 1:180159/1‑148 (MQ=255)
gtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGt < 1:3393847/148‑1 (MQ=255)
gtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGt < 1:2604120/148‑1 (MQ=255)
gtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGt < 1:3515543/148‑1 (MQ=255)
gtTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGt > 1:1640256/1‑148 (MQ=255)
aaaaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCg < 1:2165856/148‑1 (MQ=255)
aaaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGc > 2:105639/1‑148 (MQ=255)
aaCGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCt > 2:3288588/1‑148 (MQ=255)
tCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGaa > 2:3634912/1‑148 (MQ=255)
cgcgATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTg > 1:2139740/1‑107 (MQ=255)
cgcgATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGacg > 2:1862851/1‑146 (MQ=255)
gcgATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGa < 2:1700772/148‑1 (MQ=255)
gcgATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGa < 1:1893590/148‑1 (MQ=255)
gcgATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGa < 1:1056830/148‑1 (MQ=255)
aTCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCCAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGAttt > 2:2331778/1‑148 (MQ=255)
aTCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGAttt < 2:2903439/148‑1 (MQ=255)
aTCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGAttt > 1:1175254/1‑148 (MQ=255)
tCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTa > 2:1003285/1‑148 (MQ=255)
tCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTa > 2:2470504/1‑148 (MQ=255)
ccTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTAt > 1:2730633/1‑148 (MQ=255)
ttCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATgg < 2:746485/148‑1 (MQ=255)
tctGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGt < 1:446296/148‑1 (MQ=255)
ctGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGtt < 2:2364257/148‑1 (MQ=255)
ctGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGtt > 1:3732997/1‑148 (MQ=255)
ctGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGtt < 2:3438101/148‑1 (MQ=255)
tGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGttt < 2:2477471/148‑1 (MQ=255)
cGGTGCTCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTaa < 2:2582755/148‑1 (MQ=255)
gTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAacg < 1:674498/148‑1 (MQ=255)
gTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAacg > 2:1959456/1‑148 (MQ=255)
tGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTCTGGAGTTTTAacga > 2:2783059/1‑148 (MQ=255)
gATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAacgac > 1:446048/1‑148 (MQ=255)
atcatcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAacgacg > 2:65293/1‑148 (MQ=255)
tcatcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAAcgacga > 2:1481247/1‑148 (MQ=255)
tcatcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAAcgacga > 2:2971976/1‑148 (MQ=255)
catcTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGaa < 1:1003896/148‑1 (MQ=255)
cTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAAcgc > 1:214552/1‑148 (MQ=255)
aCCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGt < 2:1753672/148‑1 (MQ=255)
ccTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAg > 2:2254576/1‑148 (MQ=255)
gTTCAGGGCGATGACGCGCCGTGGCAAATTGTTCGCGCATTTGAACTGGCTAATCAGCGCTATGAGTGAGTCGTATTGATCGTCTGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGTGTTTTAACGAAGAACGCGTAGCTCGGGCGa < 2:3546103/148‑1 (MQ=255)
gTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGa < 1:2219137/148‑1 (MQ=255)
gTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGa < 1:975615/148‑1 (MQ=255)
ttCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAt > 1:2668456/1‑148 (MQ=255)
ttCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAt > 1:3301009/1‑148 (MQ=255)
ttCAGGGCGATGACGCGCCGGGGCAAATTGTTAGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAt > 2:1883559/1‑148 (MQ=255)
tCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAtt < 1:473972/148‑1 (MQ=255)
tCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAtt < 2:429604/148‑1 (MQ=255)
cAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCACTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAttt < 2:2204307/148‑1 (MQ=255)
gggCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCTAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGAttttt > 2:3188186/1‑148 (MQ=255)
ggCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTa < 1:2534667/148‑1 (MQ=255)
ggCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTa < 1:134833/148‑1 (MQ=255)
aTGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAg > 2:2627331/1‑148 (MQ=255)
tGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGc < 2:2658132/148‑1 (MQ=255)
gcgcCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCa < 1:1031211/148‑1 (MQ=255)
ccGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTc < 1:3056462/148‑1 (MQ=255)
ggggCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCg < 2:446048/148‑1 (MQ=255)
gggCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCgg < 2:3654684/148‑1 (MQ=255)
gggCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCgg > 1:2872502/1‑148 (MQ=255)
gggCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCgg > 1:1418978/1‑148 (MQ=255)
cAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTg > 1:472891/1‑148 (MQ=255)
tGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAgc > 2:3182190/1‑148 (MQ=255)
tGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAgc > 2:2091153/1‑148 (MQ=255)
tGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAgc > 2:162203/1‑148 (MQ=255)
tGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAgc > 1:2066378/1‑148 (MQ=255)
cATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCggg > 1:577821/1‑148 (MQ=255)
aTTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGc > 2:3132543/1‑148 (MQ=255)
aTTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGc < 2:3723398/148‑1 (MQ=255)
tGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCAt < 2:1737874/148‑1 (MQ=255)
tGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCAt < 2:2061145/148‑1 (MQ=255)
cTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATgaga < 1:286484/148‑1 (MQ=255)
gCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACgg < 1:3353842/148‑1 (MQ=255)
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TGTGATCACCTCAAAAACCGGTGCTGCGCTACATGATATTTTGCATGTGTTAAAACGTCGCGATCCTTCTCTGCCGGTGATCATCTACCCTGCCGCCGTTCAGGGCGATGACGCGCCGGGGCAAATTGTTCGCGCCATTGAACTGGCGAATCAGCGCAATGAGTGCGACGTATTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTATGGAGTTTTAACGACGAACGCGTAGCGCGGGCGATTTTTACCAGCCGCATTCCGGTTGTCAGCGCCGTCGGGCATGAGACGGAT > CP009273/2628019‑2628313
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
