Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F434 I0 R1	1130	215.9	7031662	97.1%	6827743	147.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	2,222,656	A→C	23.8%	intergenic (+112/+261)	yohP → / ← dusC	uncharacterized protein/tRNA‑dihydrouridine synthase C

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	2,222,656	0	A	C	23.8%	92.7 / 2.0	72	intergenic (+112/+261)	yohP/dusC	uncharacterized protein/tRNA‑dihydrouridine synthase C
Reads supporting (aligned to +/- strand): ref base A (4/38); new base C (4/9); total (15/57)
Fisher's exact test for biased strand distribution p-value = 7.91e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCA  >  CP009273/2222509‑2222803

cTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑Ca                                                                                                                                                      <  2:1106038/148‑1 (MQ=255)

cTGGTGGTGACTGGCGTATCTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑Ca                                                                                                                                                      <  2:1103005/148‑1 (MQ=255)

  ggtggtGACTGGCGTATTTAAGATGATATTTTAAAATTAATTACTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAgg                                                                                                                                                    <  2:505567/148‑1 (MQ=255)

   gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCATGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑AAggg                                                                                                                                                   >  2:2453205/1‑148 (MQ=255)

    tggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAgggg                                                                                                                                                  <  1:2387852/148‑1 (MQ=255)

      gtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggc                                                                                                                                                <  2:2085578/148‑1 (MQ=255)

      gtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggc                                                                                                                                                <  2:2085430/148‑1 (MQ=255)

         aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggcgg‑c                                                                                                                                            <  1:2923076/148‑1 (MQ=255)

         aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggcgg‑c                                                                                                                                            <  1:134011/148‑1 (MQ=255)

         aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggcgg‑c                                                                                                                                            <  1:1640749/148‑1 (MQ=255)

            ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CCgggggggggccc                                                                                                                                          >  2:1944760/1‑144 (MQ=255)

            ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑G‑gggggggggggccc                                                                                                                                          >  1:278953/1‑144 (MQ=255)

             gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAAt                                                                                                                                        <  2:1530579/148‑1 (MQ=255)

             gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCGTCATATAAGCACTGGCGCAAGGAGCGCGG‑CCGGGGGGGG‑cccc                                                                                                                                         >  2:1905444/1‑146 (MQ=255)

             gCGTATTTAAGATGATATTTTAAAAATAATTAAAGTCATCAGGTCCGAAAATAACTAGAATATTTCAGTCTCTCATCCTGTTGAGATCCTGTCATGTGCATTGCTTCATATAATCACTGGCTCAAGTAGCGC‑G‑CAGGGGGCGG‑CCAAt                                                                                                                                        >  1:2596383/1‑148 (MQ=255)

              cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CGGGGGGGGG‑CCaaa                                                                                                                                        >  2:1941081/1‑147 (MQ=255)

              cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑gggggggggggggcgg                                                                                                                                        >  1:630893/1‑142 (MQ=255)

              cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑ggggggggggggcgcc                                                                                                                                        >  2:1208981/1‑142 (MQ=255)

              cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑ggggggggggggccac                                                                                                                                        >  2:2664390/1‑142 (MQ=255)

              cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CGGGGGGGGG‑cccagc                                                                                                                                       >  2:1941198/1‑144 (MQ=255)

                    tAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATcgccgcc                                                                                                                                 <  1:1093013/148‑1 (MQ=255)

                     aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATcgccgccg                                                                                                                                <  2:3147517/148‑1 (MQ=255)

                     aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATcgccgccg                                                                                                                                <  2:3147535/148‑1 (MQ=255)

                        atgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CGGGGGGGGG‑CCAA‑CGCgcccgccc                                                                                                                             >  2:2087802/1‑148 (MQ=255)

                        atgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GGGGGGGGGG‑GCGAAAGCCCCCGccc                                                                                                                             >  2:1386597/1‑148 (MQ=255)

                         tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGcccc                                                                                                                            <  2:3470362/148‑1 (MQ=255)

                          gatATTTTAAAATTAATTAAGGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGccccc                                                                                                                           <  2:2596383/148‑1 (MQ=255)

                               tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCAGGGGGCGG‑CCACACccccccccccccccac                                                                                                                       >  2:26081/1‑144 (MQ=38)

                                       taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CGGGGGGGGGCCCAAGCCCCCCCCCCCCCCCCCCCCCCgc                                                                                                                >  2:158647/1‑147 (MQ=255)

                                       taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GGGGGGGGGG‑GCCCCCGcccccccccccccccccccccccc                                                                                                              >  1:1163202/1‑144 (MQ=255)

                                           taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CGGGGGGGGG‑GCCAAAGCCGCCCCCCCCAGCCCCCCCCGGCGCTg                                                                                                          >  2:2303928/1‑148 (MQ=37)

                                           taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGGGG‑GCCAAAGCCGCGCCCCCCAGCACCCCCCGGcgcag                                                                                                          >  2:555409/1‑144 (MQ=37)

                                                tcatcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GCGGGGGGGG‑CCCCCAGCCCCCGCCCCCCGCCCCCCCCCGCCCTGGCGaa                                                                                                     >  2:2727731/1‑148 (MQ=255)

                                                     aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGAAAGGAGCGC‑G‑CTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaaa                                                                                                <  2:1556884/148‑1 (MQ=255)

                                                        tCCTAAAATAACGTTAATTTTTCTGTCTCTCATCCTGTTGCGCGCGTGTCTTGTGCATTGCTTCATATAATCAGTGGCGCATGGCGCGC‑G‑CTGGGGGCGG‑CAAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg                                                                                             <  1:1801910/148‑1 (MQ=21)

                                                        tCCTAAAATAACGAGAATATTTCTGTCTCTCATCGTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACGGGCGCAAGGAGCGC‑G‑CTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg                                                                                             <  1:3420224/148‑1 (MQ=21)

                                                          cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgcc                                                                                           <  2:576107/148‑1 (MQ=255)

                                                                   cGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCTTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCgg                                                                                  <  2:2915663/148‑1 (MQ=255)

                                                                    gataaTATTTCTGTCTCTCATCGTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CCGGGGGCGG‑CCAATCCCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGt                                                                                 <  2:309765/145‑1 (MQ=18)

                                                                    gataaTATTTCTGTCTCTCATCGTGTTGCGCTCCTGACATGTGCTTTGCTTCATTTAATCCCTGGCGCAAGGAGGGC‑G‑CTGGGGGCGG‑CAACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGt                                                                                 <  2:309787/145‑1 (MQ=18)

                                                                       aaTATTTCAGTCTCCCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTACATATAAGCACTGGCGCACGGAGCGC‑G‑CAGGGGGCGG‑CAAATCCCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGcc                                                                              <  2:1538922/148‑1 (MQ=18)

                                                                         tttttCATTCTCTCATCGTTTTGCGCTCCTGTATTGTGATTTGCTTAATATAATCACGGGCCAATGGAGCGC‑G‑CCGGGGGCGC‑CAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt                                                                            <  1:3466005/146‑1 (MQ=17)

                                                                              cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt                                                                       <  1:2347551/148‑1 (MQ=255)

                                                                              cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTCGCGCAAGGAGCGC‑G‑CCAGGGGCGG‑CCAAACGCCCCCGCCCCCAGCACCCCCCCCCACAGGCGAAAAAAAAAACCCCAGCGCGGGGCCCACGGcc                                                                       >  2:591159/1‑147 (MQ=255)

                                                                              cAGTCTCTCATCCTGTGGCGCTCCTGTCATGTGCTTTGCTTCATATAATCCCGGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt                                                                       <  1:2347303/148‑1 (MQ=255)

                                                                                ggctctcATCCTGTTGCGCTCCTGTAATGTGATTTGCTTAATATAATCACTGGCGCAAGGAGCGC‑G‑CCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGATGCGCGGTGCCCTCGGCTTa                                                                     <  1:2330540/146‑1 (MQ=17)

                                                                                 tctctcATCCTGTTGGGCTCCTGTCATGTGCATTGCTTCATATAATCAGTGGCGAAAGGAGCGC‑G‑CTGGGGGGGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAt                                                                    <  2:1842605/148‑1 (MQ=18)

                                                                                 tctctcATCCTGTTGCGCTCCGGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAt                                                                    <  2:468521/148‑1 (MQ=255)

                                                                                  ctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc                                                                   <  2:589199/148‑1 (MQ=255)

                                                                                  ctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc                                                                   <  2:590382/148‑1 (MQ=255)

                                                                                      cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CCGGGGGCGG‑CAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt                                                               <  1:1463150/148‑1 (MQ=255)

                                                                                       aTCGTGTTGCGCTCTTTTATTGTGATTTTTTTAATATAATCAGGGGCGAATGGCGGGC‑G‑CGGGGGGCGC‑CAAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa                                                              <  1:1325395/148‑1 (MQ=2)

                                                                                           tGTTGCGCTCCTGTCTTTTGATTTTCTTAATATAACCCCTGGCGCACGGCGCGC‑G‑CTGGGGGCGC‑CCAACCCCCCCCCCCCCCGCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc                                                          <  1:141599/148‑1 (MQ=14)

                                                                                           tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CCGGGGGCGG‑CCAAGCGCCGCCCCCCCGTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc                                                          <  1:2553271/148‑1 (MQ=17)

                                                                                           tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc                                                          <  2:2630752/148‑1 (MQ=255)

                                                                                           tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc                                                          <  2:2627470/148‑1 (MQ=255)

                                                                                           tGTTGCGCTCCTGTAATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc                                                          <  2:2630757/148‑1 (MQ=255)

                                                                                                  cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCggg                                                   <  2:2356418/148‑1 (MQ=255)

                                                                                                     cTGTCATGTGCATTGCTTAATATAATCCCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCg                                                <  2:2572359/148‑1 (MQ=255)

                                                                                                       gTCTTGTGCATTGATTCATATAATCCCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGC‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                              <  2:2364256/148‑1 (MQ=255)

                                                                                                           tgtgCATTGATAAATATAATCACTGGCGCAAGGAGCGC‑G‑CCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGcgcg                                          <  1:1386597/148‑1 (MQ=255)

                                                                                                                atggCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa                                     <  2:699481/145‑1 (MQ=255)

                                                                                                                  tgataaatatAAGCCCGGGCGCACGGTGCGC‑G‑CCGGGGGCGC‑CCAAGCGCCGCCCCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc                                   <  1:2990541/142‑1 (MQ=11)

                                                                                                                  tGCTTAATATAACCCGTGGCGCATGGAGCGC‑G‑CGGGGGGCGC‑CCAACCGCCGCCCCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc                                   <  1:2992462/148‑1 (MQ=11)

                                                                                                                    cTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                 <  2:430919/148‑1 (MQ=40)

                                                                                                                     ttaatatAACCAGTGGCGCACGGAGGGC‑G‑CGGGGGGCGC‑CCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATc                                <  1:3376167/145‑1 (MQ=11)

                                                                                                                         tataATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTg                            <  2:395660/148‑1 (MQ=37)

                                                                                                                             aTCACTGGCGCATGGTGCGC‑G‑CTGGGGGCGG‑CCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaa                        <  1:821254/148‑1 (MQ=255)

                                                                                                                             aTCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaa                        <  2:1847453/148‑1 (MQ=33)

                                                                                                                                aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                     <  2:3496484/148‑1 (MQ=32)

                                                                                                                                aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                     <  2:3496929/148‑1 (MQ=32)

                                                                                                                                aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                     <  2:3500566/148‑1 (MQ=32)

                                                                                                                                aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                     <  2:3500980/148‑1 (MQ=32)

                                                                                                                                   ggCGCACGGAGGGC‑G‑CCGGGGGCGC‑CCAATCGCGGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc                  <  2:2090793/148‑1 (MQ=11)

                                                                                                                                   ggCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc                  <  2:321805/148‑1 (MQ=32)

                                                                                                                                      gaaaGGAGGGC‑G‑GCGGGGGGGG‑CAACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTTCCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt               <  1:232842/146‑1 (MQ=11)

                                                                                                                                                  g‑cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATc    <  2:3509434/148‑1 (MQ=32)

                                                                                                                                                    cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATcc   <  2:1163207/148‑1 (MQ=32)

                                                                                                                                                     aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa  <  2:1358952/148‑1 (MQ=32)

CTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCA  >  CP009273/2222509‑2222803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A