Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F434 I0 R1
|
1130 |
215.9 |
7031662 |
97.1% |
6827743 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,668,397 |
C→A |
100% |
G242C (GGT→TGT) |
yphC ← |
putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,668,397 | 0 | C | A | 97.2%
| 440.7
/ 4.1
| 145 | G242C (GGT→TGT) | yphC | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base A (75/66); total (77/68) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 147 total aligned reads displayed.
GTGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTCGC > CP009273/2668254‑2668541
|
tGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTggg > 1:3263581/1‑148 (MQ=255)
tGCATCAGATCGGCGCTGACCTCGAATTCCACATTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTggg > 1:3263586/1‑148 (MQ=255)
cATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTg < 2:2566058/148‑1 (MQ=255)
aTCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCg > 1:2813555/1‑148 (MQ=255)
tCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCgg < 2:2813555/148‑1 (MQ=255)
tCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCgg < 2:3241777/148‑1 (MQ=255)
cGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCAAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGc < 1:3418827/148‑1 (MQ=255)
cGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCAAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGc < 1:3418425/148‑1 (MQ=255)
cgcTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGAt < 1:2059599/148‑1 (MQ=255)
gcTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATa < 2:1016004/148‑1 (MQ=255)
cTGACCTCGAATTCCACTTTTCCGGTGTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATaa < 2:2170997/148‑1 (MQ=255)
gACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATc > 1:1430873/1‑148 (MQ=255)
tCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCg > 1:3255469/1‑148 (MQ=255)
tCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCg > 2:2332706/1‑148 (MQ=255)
cGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCgg > 1:1506055/1‑148 (MQ=255)
aaTTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCa > 1:3129079/1‑148 (MQ=255)
ttCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGa > 1:2226403/1‑148 (MQ=255)
ttCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGa > 1:1970457/1‑148 (MQ=255)
ttCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGa > 1:195378/1‑148 (MQ=255)
ttCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGa > 2:1852083/1‑148 (MQ=255)
tCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGAc < 1:3021485/148‑1 (MQ=255)
ccACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGAcc < 1:1285442/148‑1 (MQ=255)
aCTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCtt < 1:1066925/148‑1 (MQ=255)
aCTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCtt > 2:802886/1‑148 (MQ=255)
aCTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCtt < 1:1066988/148‑1 (MQ=255)
tttCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCgg < 1:598763/148‑1 (MQ=255)
tCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCggtg > 2:1460333/1‑148 (MQ=255)
ggTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGtt < 1:1663329/148‑1 (MQ=255)
tCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTa > 2:1509346/1‑148 (MQ=255)
tCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTa > 2:1509210/1‑148 (MQ=255)
aCCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTaaa < 2:2130884/148‑1 (MQ=255)
aaTGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAg < 2:2532011/148‑1 (MQ=255)
aaTGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAg > 1:1943349/1‑148 (MQ=255)
gTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCg < 2:2443718/148‑1 (MQ=255)
accaccCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGAt < 1:2582646/148‑1 (MQ=255)
accaccCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGAt < 1:59375/148‑1 (MQ=255)
accaccCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGAt < 1:463095/148‑1 (MQ=255)
accaccCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGAt < 1:3214738/148‑1 (MQ=255)
caccCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATcc < 1:2628624/148‑1 (MQ=255)
caccCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATcc > 1:1711090/1‑148 (MQ=255)
caccCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATcc < 2:2460523/148‑1 (MQ=255)
accCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCa < 1:1189163/148‑1 (MQ=255)
accCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCa < 1:765112/148‑1 (MQ=255)
accCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCa < 1:2523494/148‑1 (MQ=255)
cccGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCAt > 2:1254920/1‑148 (MQ=255)
cccGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCAt < 2:1167822/148‑1 (MQ=255)
ccGTCCCCAGTCAGCTGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGTTAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATc < 1:512581/148‑1 (MQ=255)
ccGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATc < 1:512359/148‑1 (MQ=255)
ccGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATc > 1:1740160/1‑148 (MQ=255)
cGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCa > 2:2814201/1‑148 (MQ=255)
cGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCa > 1:438506/1‑148 (MQ=255)
tCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCAcc > 1:2690554/1‑148 (MQ=255)
aGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTaa < 2:1536179/148‑1 (MQ=255)
gCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGtt < 1:2646782/148‑1 (MQ=255)
cGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGttt > 1:2830827/1‑148 (MQ=255)
cGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGttt < 1:2289327/148‑1 (MQ=255)
cGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGttt > 1:1079609/1‑148 (MQ=255)
cGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGttt < 1:1385779/148‑1 (MQ=255)
ggATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGcc < 1:468532/148‑1 (MQ=255)
gATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCa > 1:1522649/1‑148 (MQ=255)
gATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGAGCCATCACCCCTAACTGTTTTGCCa > 1:1523142/1‑148 (MQ=255)
aTTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCAt < 2:2608119/148‑1 (MQ=255)
aTTGCAGTGCCAGAAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCAt > 2:3304237/1‑148 (MQ=255)
ttGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATc > 1:1514147/1‑148 (MQ=255)
gCAGTGCCTGCAAGCGACGTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGGCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGATAAATAGCCGTGATCAATCACCCCTAACTGTTTTGCCATCGc < 2:863616/148‑1 (MQ=255)
cAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGcc < 1:2590554/148‑1 (MQ=255)
tGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGa > 1:2058585/1‑148 (MQ=255)
gCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTc > 1:2199669/1‑148 (MQ=255)
gCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTc > 1:2199752/1‑148 (MQ=255)
gCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTc < 2:287245/148‑1 (MQ=255)
gCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTc < 2:2992844/148‑1 (MQ=255)
cAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGACCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTcc > 2:3211736/1‑148 (MQ=255)
aGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCgg > 2:1409367/1‑148 (MQ=255)
aGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCgg > 2:604295/1‑148 (MQ=255)
aGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCgg > 2:604894/1‑148 (MQ=255)
aGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCgg > 2:2557835/1‑148 (MQ=255)
aGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCgg > 2:2493735/1‑148 (MQ=255)
gCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGgc > 2:3270323/1‑148 (MQ=255)
ccTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGgcagca > 1:3108071/1‑148 (MQ=255)
ccTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGgcagca > 1:759390/1‑148 (MQ=255)
cTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAACTAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCat > 2:174268/1‑148 (MQ=255)
cTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCat > 2:174245/1‑148 (MQ=255)
cTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCat > 2:174277/1‑148 (MQ=255)
gCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCaa < 2:3047865/148‑1 (MQ=255)
gCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGATTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCaa < 1:614536/148‑1 (MQ=255)
ttACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGc < 1:2554618/148‑1 (MQ=255)
ttACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGc < 2:1068719/148‑1 (MQ=255)
ttACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGc > 2:183494/1‑148 (MQ=255)
ccGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCga < 2:1211017/148‑1 (MQ=255)
cAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATcc < 2:1943349/148‑1 (MQ=255)
aTCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGt < 2:2021261/148‑1 (MQ=255)
cgcAACATCCGCGCCACAGTGGGTGAGTTCGGCGATACTCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCa < 2:3443183/148‑1 (MQ=255)
cgcAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCa > 1:3427538/1‑148 (MQ=255)
cgcAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCa > 2:2162726/1‑148 (MQ=255)
aCATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACcgc > 2:2407762/1‑148 (MQ=255)
aTCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGa < 1:3011143/148‑1 (MQ=255)
cgcgCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCt < 2:1354389/148‑1 (MQ=255)
gcgcCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCtt < 1:1810028/148‑1 (MQ=255)
ccACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTCg > 2:1874764/1‑148 (MQ=255)
cacaGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTCACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTCGc < 2:1532983/148‑1 (MQ=255)
|
GTGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTCGC > CP009273/2668254‑2668541
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGTGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTCGCCAGCA > CP009273/2668252‑2668546
|
TGGTGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGG > SRR19973065.3066514/1‑150 (MQ=60)
GGTGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGG > SRR19973065.3283361/1‑150 (MQ=60)
GGTGCATCAGATCGGCGCTGACCTCGAATTCCACATTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGG > SRR19973065.3283366/1‑150 (MQ=60)
GTGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGT < SRR19973065.568226/150‑1 (MQ=60)
TGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTG < SRR19973065.2577152/150‑1 (MQ=60)
AGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCG > SRR19973065.2830944/1‑150 (MQ=60)
ATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCGGC > SRR19973065.2624300/1‑150 (MQ=60)
ATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGC < SRR19973065.3447348/150‑1 (MQ=60)
CGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCAAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGA < SRR19973065.3439713/150‑1 (MQ=60)
CGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCAAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGA < SRR19973065.3439310/150‑1 (MQ=60)
CGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAA < SRR19973065.2072742/150‑1 (MQ=60)
CTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATC > SRR19973065.1440179/1‑150 (MQ=60)
CTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATC > SRR19973065.173284/1‑150 (MQ=60)
CCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCG > SRR19973065.3275154/1‑150 (MQ=60)
CCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCG > SRR19973065.2034266/1‑150 (MQ=60)
CTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGG > SRR19973065.1515829/1‑150 (MQ=60)
CGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCA > SRR19973065.3148123/1‑150 (MQ=60)
AATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGA > SRR19973065.196899/1‑150 (MQ=60)
AATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGA > SRR19973065.1983303/1‑150 (MQ=60)
AATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGA > SRR19973065.2240587/1‑150 (MQ=60)
TCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCT < SRR19973065.3039997/150‑1 (MQ=60)
CCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTT < SRR19973065.1293918/150‑1 (MQ=60)
ACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCG < SRR19973065.1073990/150‑1 (MQ=60)
ACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCG < SRR19973065.1074053/150‑1 (MQ=60)
TTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTG < SRR19973065.602497/150‑1 (MQ=60)
GGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGC < SRR19973065.1674470/150‑1 (MQ=60)
GGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGC < SRR19973065.3424457/150‑1 (MQ=60)
TTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAA > SRR19973065.1954811/1‑150 (MQ=60)
CCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAG > SRR19973065.1956051/1‑150 (MQ=60)
GTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTG < SRR19973065.943531/150‑1 (MQ=60)
ACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCC > SRR19973065.1722477/1‑150 (MQ=60)
ACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCC < SRR19973065.3234071/150‑1 (MQ=60)
ACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCC < SRR19973065.60008/150‑1 (MQ=60)
ACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCC < SRR19973065.466292/150‑1 (MQ=60)
ACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCC < SRR19973065.2598745/150‑1 (MQ=60)
CACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCAT < SRR19973065.1443939/150‑1 (MQ=60)
CACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCAT < SRR19973065.2644883/150‑1 (MQ=60)
CACCCGTCCCAAGTCTGGGGTGGTTTGCAGTGCAAGCAAGCGACCTTCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCAT < SRR19973065.1343161/150‑1 (MQ=60)
ACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATC > SRR19973065.1751652/1‑150 (MQ=60)
ACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATC < SRR19973065.2539336/150‑1 (MQ=60)
ACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATC < SRR19973065.1196688/150‑1 (MQ=60)
ACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATC < SRR19973065.770200/150‑1 (MQ=60)
CCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCA > SRR19973065.441544/1‑150 (MQ=60)
CCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCA > SRR19973065.1531771/1‑150 (MQ=60)
CCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCAC < SRR19973065.515752/150‑1 (MQ=60)
CAGTCCCCAGTCAGCTGTGTATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGTTAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCAC < SRR19973065.515975/150‑1 (MQ=60)
CGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACC > SRR19973065.2707259/1‑150 (MQ=60)
AGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACT > SRR19973065.494430/1‑150 (MQ=60)
AGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACT > SRR19973065.1159615/1‑150 (MQ=60)
AGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTT > SRR19973065.1086737/1‑150 (MQ=60)
AGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTT > SRR19973065.2848284/1‑150 (MQ=60)
AGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTT > SRR19973065.2113983/1‑150 (MQ=60)
GCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGAAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTT < SRR19973065.2663098/150‑1 (MQ=60)
CGGTGGATTGCAGTGCCAGCAAGCGACCTGCGTCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTG < SRR19973065.447439/150‑1 (MQ=60)
CGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTG < SRR19973065.2303747/150‑1 (MQ=60)
CGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTG < SRR19973065.1394888/150‑1 (MQ=60)
TGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCA > SRR19973065.1532628/1‑150 (MQ=60)
TGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGAGCCATCACCCCTAACTGTTTTGCCA > SRR19973065.1533131/1‑150 (MQ=60)
GGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCAT < SRR19973065.1564538/150‑1 (MQ=60)
GGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCAT < SRR19973065.471749/150‑1 (MQ=60)
GATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATC > SRR19973065.1524033/1‑150 (MQ=60)
CAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAG < SRR19973065.315116/150‑1 (MQ=60)
CAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAG < SRR19973065.2606673/150‑1 (MQ=60)
AGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGA > SRR19973065.2071726/1‑150 (MQ=60)
TGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACG < SRR19973065.2703398/150‑1 (MQ=60)
CAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTC > SRR19973065.2215545/1‑150 (MQ=60)
CAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTC > SRR19973065.2213753/1‑150 (MQ=60)
CAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTC > SRR19973065.2213837/1‑150 (MQ=60)
AAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTCACTGTTTTGCCATCGCCAGACGTTCCGGC > SRR19973065.3280536/1‑150 (MQ=60)
GACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCA > SRR19973065.764449/1‑150 (MQ=60)
GACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCA > SRR19973065.3127027/1‑150 (MQ=60)
GCATTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGATTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACG < SRR19973065.618474/150‑1 (MQ=60)
TTACCGGAACAATCGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCG < SRR19973065.2570599/150‑1 (MQ=60)
CGAGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTG > SRR19973065.657188/1‑150 (MQ=60)
AGCGCAACATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCA > SRR19973065.3448456/1‑150 (MQ=60)
ATCCGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACC < SRR19973065.3029583/150‑1 (MQ=60)
CGCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTT < SRR19973065.2831594/150‑1 (MQ=60)
GCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTC > SRR19973065.2412411/1‑150 (MQ=60)
GCGCCACAGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTC < SRR19973065.1821938/150‑1 (MQ=60)
AGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTCGCCAGCA > SRR19973065.1964532/1‑150 (MQ=60)
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TGGTGCATCAGATCGGCGCTGACCTCGAATTCCACTTTTCCGGTTTCACCAATGTAAACCACCCGTCCCCAGTCAGCGGTGGATTGCAGTGCCAGCAAGCGACCTGCGGCATTACCGGAACAATCGAGCGCAACATCCGCGCCACCGTGGGTGAGTTCGGCGATAATCTGCGGCAGACCTTCGGTGGTTGCTAAATAGCCGTGATCCATCACCCCTAACTGTTTTGCCATCGCCAGACGTTCCGGCAGCATATCAACGCCGATGATCCGTTTTGCACCGCGACCTTTCGCCAGCA > CP009273/2668252‑2668546
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |