Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,946,583 |
G→A |
24.4% |
V21I (GTC→ATC) |
yecN → |
MAPEG family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,946,583 | 0 | G | A | 24.4%
| 755.6
/ 245.1
| 353 | V21I (GTC→ATC) | yecN | MAPEG family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (156/111); new base A (44/42); total (200/153) |
| Fisher's exact test for biased strand distribution p-value = 2.61e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.53e-01 |
Only 100 of 356 total aligned reads displayed.
GTTCCGGCTATTCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAAATGAATGGCGCAG > CP009273/1946435‑1946730
|
gTTCCGGCTATTCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATg < 1:2364767/149‑1 (MQ=255)
gTTCCGGCTATTCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATg < 2:793922/149‑1 (MQ=255)
tCCGGCTATTCCACAGCTATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGGTGTTATTAATGAAGTTCTCTTTTGATATc > 1:2082904/1‑149 (MQ=255)
ggCTATTCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGtt > 1:3861881/1‑149 (MQ=255)
gCTATTCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTc > 1:742287/1‑149 (MQ=255)
aTTCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGcc > 1:3783492/1‑149 (MQ=255)
tCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTg < 2:3243076/149‑1 (MQ=255)
caGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATATACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGCTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGaa > 2:1545011/1‑149 (MQ=255)
caGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGaa < 1:1438349/149‑1 (MQ=255)
caGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGaa > 1:1822599/1‑149 (MQ=255)
caGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGaa < 2:1926487/149‑1 (MQ=255)
cAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGc < 1:2522796/149‑1 (MQ=255)
aTCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAg > 2:3083925/1‑149 (MQ=255)
tcttctCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGt > 1:780372/1‑149 (MQ=255)
tcttctCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGt > 1:4311428/1‑149 (MQ=255)
cTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGcc < 2:2272504/149‑1 (MQ=255)
tGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCt > 2:2759401/1‑149 (MQ=255)
ttGCCACCTCTCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGc < 2:4280733/149‑1 (MQ=255)
gCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGa > 1:1003005/1‑149 (MQ=255)
cACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGAcg < 1:1826045/149‑1 (MQ=255)
aCCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGAcgg > 2:2707706/1‑149 (MQ=255)
aCCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGAcgg < 1:2190728/149‑1 (MQ=255)
ccTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGAcggc > 2:3558846/1‑149 (MQ=255)
ccTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGAcggc < 1:3394893/149‑1 (MQ=255)
tATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTACGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGAcggcgg > 2:486451/1‑149 (MQ=255)
tATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGAcggcgg > 2:4500065/1‑149 (MQ=255)
aTAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGtttt < 1:3686457/149‑1 (MQ=255)
aCAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCg > 1:3170049/1‑149 (MQ=255)
cAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGa > 1:2991834/1‑149 (MQ=255)
aGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGaa > 2:3691996/1‑149 (MQ=255)
ggTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTATCGAAc > 1:3986049/1‑149 (MQ=255)
gTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACt > 1:2924253/1‑149 (MQ=255)
gTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTAGCCTGCGAATTCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACt > 1:533679/1‑149 (MQ=255)
aTCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCaaa > 2:2781626/1‑149 (MQ=255)
tCGGCCATTTTACAGGGAGTTTGTATGGTAAGCGCGCGGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAg < 2:1450169/149‑1 (MQ=255)
gCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTATCGAACTGCAAAgcgc > 2:75701/1‑149 (MQ=255)
ccATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCt < 1:4468601/149‑1 (MQ=255)
cATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTa < 2:1625445/149‑1 (MQ=255)
aTTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTAt > 2:3750089/1‑149 (MQ=255)
aTTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTAt < 1:920999/149‑1 (MQ=255)
ttttAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTAtt < 1:1503906/149‑1 (MQ=255)
ttttAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTAtt < 2:2073869/149‑1 (MQ=255)
ttttAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTAtt > 2:1690476/1‑149 (MQ=255)
tttAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTc < 2:557285/149‑1 (MQ=255)
tttAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGAGCTATTc > 2:1084255/1‑149 (MQ=255)
tAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGc > 1:4558099/1‑149 (MQ=255)
aaaGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCa < 1:1319323/149‑1 (MQ=255)
aGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCAtt > 1:3451847/1‑149 (MQ=255)
aGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCAtt < 1:2156997/149‑1 (MQ=255)
aGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGGTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCAtt < 1:4104986/149‑1 (MQ=255)
gggAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTc < 2:1183526/149‑1 (MQ=255)
gAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCAt < 1:2452382/149‑1 (MQ=255)
gAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCAt < 2:445/149‑1 (MQ=255)
aGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATg < 2:2256889/149‑1 (MQ=255)
gTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGACTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATgg > 2:263847/1‑149 (MQ=255)
tttGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGt > 2:3451448/1‑149 (MQ=255)
ttGTATGGTAAGCGCGCTGGACGCCGTTTTAAGTGCGTTGTTATGAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTa < 1:1714915/149‑1 (MQ=255)
tGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACTGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTaa < 2:2562806/149‑1 (MQ=255)
tGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTaa < 2:284940/149‑1 (MQ=255)
tGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTaa > 1:3605953/1‑149 (MQ=255)
gTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAAc > 1:3779865/1‑149 (MQ=255)
tAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTg < 2:1169802/149‑1 (MQ=255)
aaGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTgg < 2:684785/149‑1 (MQ=255)
aaGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTgg > 2:62798/1‑149 (MQ=255)
cgcgcgGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAat < 2:4171482/149‑1 (MQ=255)
cgcTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAatat > 2:4654568/1‑149 (MQ=255)
gcTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAatata < 2:4614136/149‑1 (MQ=255)
cGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCa < 1:4125716/149‑1 (MQ=255)
gCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCAt < 2:604884/149‑1 (MQ=255)
gTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGACTGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATcgc > 2:1831974/1‑149 (MQ=255)
gTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATcgc > 1:1013122/1‑149 (MQ=255)
ttttAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCCTcgcg > 2:882325/1‑149 (MQ=255)
ttttAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGGTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATcgcg < 2:2153900/149‑1 (MQ=255)
tttAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGa > 1:4631965/1‑149 (MQ=255)
tAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGAtt < 1:2793899/149‑1 (MQ=255)
aGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATtgt > 1:2576739/1‑149 (MQ=255)
aGTGCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACTGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATtgt < 2:1244004/149‑1 (MQ=255)
gTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATACGCATTCATGGTAAAGAGGTGGAATATATTCCCCTCGCGATtgtg > 1:1155043/1‑149 (MQ=255)
tGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGc < 1:324512/149‑1 (MQ=255)
gCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCt < 2:3019138/149‑1 (MQ=255)
gCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCt < 1:699871/149‑1 (MQ=255)
gCGTTGTTATTAATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCt < 1:3091272/149‑1 (MQ=255)
ttattaATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCt > 1:2236822/1‑149 (MQ=255)
tattaATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTg > 1:3619193/1‑149 (MQ=255)
ttaATGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGtt > 2:2379685/1‑149 (MQ=255)
aaTGAAGTTCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTa < 1:2611310/149‑1 (MQ=255)
aTGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTAt < 1:1383266/149‑1 (MQ=255)
gAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATgg < 2:843111/149‑1 (MQ=255)
aaGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGa > 2:3195207/1‑149 (MQ=255)
aGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGaa > 1:472436/1‑149 (MQ=255)
ttCTCTTTTGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAaat > 1:2048960/1‑149 (MQ=255)
ctTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAaatgaat < 2:4075520/149‑1 (MQ=255)
ttttGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAaatgaatg < 1:1575538/149‑1 (MQ=255)
ttttGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAaatgaatg < 2:2579501/149‑1 (MQ=255)
ttttGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAaatgaatg > 1:2205388/1‑149 (MQ=255)
ttGATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAAATGAATGgc > 2:7148/1‑149 (MQ=255)
gATATCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAAATGAATGgcgc > 2:2017138/1‑149 (MQ=255)
aTGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAAATGAATGGCGCa < 1:585042/149‑1 (MQ=255)
tGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAAATGAATGGCGCAg > 2:1559807/1‑149 (MQ=255)
tGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAAATGAATGGCGCAg > 1:271154/1‑149 (MQ=255)
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GTTCCGGCTATTCCACAGCAATCTTCTCTTTTCTGAATTTGCCACCTATCATAGACAGGTGCCATCGGCCATTTTAAAGGGAGTTTGTATGGTAAGCGCGCTGTACGCCGTTTTAAGTGCGTTGTTATTAATGAAGTTCTCTTTTGATGTCGTTCGCCTGCGAATGCAGTACCGCGTTGCCTATGGCGACGGCGGTTTTAGCGAACTGCAAAGCGCTATTCGCATTCATGGTAACGCGGTGGAATATATTCCCATCGCGATTGTGCTGATGCTGTTTATGGAAATGAATGGCGCAG > CP009273/1946435‑1946730
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
