Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,576,567 |
C→A |
5.5% |
D91Y (GAC→TAC) |
nudK ← |
GDP‑mannose pyrophosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,576,567 | 0 | C | A | 5.5%
| 1204.1
/ 25.8
| 309 | D91Y (GAC→TAC) | nudK | GDP‑mannose pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base C (154/138); new base A (7/10); total (161/148) |
| Fisher's exact test for biased strand distribution p-value = 4.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 328 total aligned reads displayed.
TGATTGTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCCGCGATCGTA > CP009273/2576419‑2576714
|
tGATTGTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTtcgtc < 1:2915435/149‑1 (MQ=255)
aTTGTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTcgtcgt < 1:3991903/149‑1 (MQ=255)
aTTGTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTcgtcgt > 2:3248196/1‑149 (MQ=255)
ttGTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGtt > 1:4098637/1‑149 (MQ=255)
tGTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTAGTTa < 1:2507358/149‑1 (MQ=255)
gTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTAt < 2:1099085/149‑1 (MQ=255)
gTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTAt > 2:3585328/1‑149 (MQ=255)
tCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATc > 1:2964667/1‑149 (MQ=255)
cACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATcc < 1:3953939/149‑1 (MQ=255)
aTTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCagcagc > 1:4377760/1‑149 (MQ=255)
aTTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCagcagc > 2:4475988/1‑149 (MQ=255)
gCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGgc < 1:1934075/149‑1 (MQ=255)
gATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGgcgc < 1:4215589/149‑1 (MQ=255)
aTAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCa > 2:3731003/1‑149 (MQ=255)
tAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAg > 2:4513207/1‑149 (MQ=255)
aaaaaaGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGc < 2:4579959/149‑1 (MQ=255)
gTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCaa < 2:4438336/149‑1 (MQ=255)
tGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAAt < 2:805674/149‑1 (MQ=255)
tGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAAt < 2:1938883/149‑1 (MQ=255)
ggATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATc < 2:643180/149‑1 (MQ=255)
gCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGc < 2:4219840/149‑1 (MQ=255)
cTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGcc < 2:1660421/149‑1 (MQ=255)
gTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCt < 2:3485777/149‑1 (MQ=255)
gTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCt > 1:1884785/1‑149 (MQ=255)
gTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCt > 1:2625619/1‑149 (MQ=255)
gTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCt > 2:4242233/1‑149 (MQ=255)
gTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCAACAAAGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCt > 2:312850/1‑149 (MQ=255)
gTCACACCGCCTGGCGACATAGACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAAGACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCt < 2:940433/149‑1 (MQ=255)
cacaCCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCttt < 2:4373662/149‑1 (MQ=255)
cacaCCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGGTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCttt < 1:1990301/149‑1 (MQ=255)
acacCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTc < 2:1415212/149‑1 (MQ=255)
acacCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTATc > 2:2637644/1‑149 (MQ=255)
cacCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCa < 2:271177/149‑1 (MQ=255)
cacCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCa < 1:4326432/149‑1 (MQ=255)
gCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGc < 2:2975727/149‑1 (MQ=255)
tGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCAt < 1:1835008/149‑1 (MQ=255)
ggCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCAtt > 2:1882552/1‑149 (MQ=255)
ggCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCAtt < 1:226099/149‑1 (MQ=255)
ggCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCAtt < 2:1996640/149‑1 (MQ=255)
cGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTaa < 1:3676460/149‑1 (MQ=255)
cGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTaa < 1:4491788/149‑1 (MQ=255)
gACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAAc > 2:336053/1‑149 (MQ=255)
aCATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAAcc > 1:1644172/1‑149 (MQ=255)
cATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAAccc < 1:174896/149‑1 (MQ=255)
atatACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCa < 2:238538/149‑1 (MQ=255)
tataCAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAg > 2:4726207/1‑149 (MQ=255)
aCAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTa > 2:2562630/1‑149 (MQ=255)
ttCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGa > 2:4643027/1‑149 (MQ=255)
tttGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACt > 1:2610347/1‑149 (MQ=255)
gcgcACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGAc > 2:1490804/1‑149 (MQ=255)
cgcACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTAGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACg < 2:4168638/149‑1 (MQ=255)
cACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCTCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGaa > 1:82441/1‑149 (MQ=255)
cACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGaa > 1:642931/1‑149 (MQ=255)
cACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTAGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGaa < 2:682892/149‑1 (MQ=255)
cACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGa > 1:3897930/1‑149 (MQ=255)
aCCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGaa > 1:4301916/1‑149 (MQ=255)
aCCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGaa > 2:4341427/1‑149 (MQ=255)
aCCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGGTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGaa < 1:1780008/149‑1 (MQ=255)
cACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCa > 2:4269157/1‑149 (MQ=255)
aCTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCAc > 2:2277841/1‑149 (MQ=255)
cTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACg > 1:4681630/1‑149 (MQ=255)
ttCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACgg < 1:377050/149‑1 (MQ=255)
tCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGt < 1:543366/149‑1 (MQ=255)
gCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCtttt < 1:4255820/149‑1 (MQ=255)
ccGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTttc < 1:3847413/149‑1 (MQ=255)
cGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTttct > 2:3409894/1‑149 (MQ=255)
cGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTttct < 2:1197037/149‑1 (MQ=255)
cGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTttct < 2:2967979/149‑1 (MQ=255)
gTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTttctt > 2:3421515/1‑149 (MQ=255)
tctcTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTttcttc > 2:2768990/1‑149 (MQ=255)
ctctTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCg < 1:1032634/149‑1 (MQ=255)
tctTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCCGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCgt < 2:2893723/149‑1 (MQ=255)
ctTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCgtg > 1:453091/1‑149 (MQ=255)
aTCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTa > 2:514409/1‑149 (MQ=255)
aTCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTa > 2:2789024/1‑149 (MQ=255)
tCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTAc < 1:1110507/149‑1 (MQ=255)
tCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTAc > 1:3550231/1‑149 (MQ=255)
cGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACa > 2:1723334/1‑149 (MQ=255)
cttcttTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACagg > 1:3427348/1‑149 (MQ=255)
ttcttTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACagga > 1:2224206/1‑149 (MQ=255)
ttcttTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACagga > 1:1376926/1‑149 (MQ=255)
ttcttTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACagga > 1:1465215/1‑149 (MQ=255)
tcttTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACaggag > 2:36324/1‑149 (MQ=255)
cttTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACaggagg > 1:4394738/1‑149 (MQ=255)
ttGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGAt > 2:3959284/1‑149 (MQ=255)
tGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGAtc < 1:34121/149‑1 (MQ=255)
gCGAATACACACTTCCGGTTCGTCGTTATCAAGCAGCCCGGCGCAGATTTCAATCAGCTGCCCGCTATCATTGCCAATAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGACTATTACTACCTGTTGTACAGGAGGAgcg > 1:3273051/1‑149 (MQ=255)
gAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGAtcgtc < 2:1603700/149‑1 (MQ=255)
aTACACACGTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGc < 2:3024452/149‑1 (MQ=255)
tACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCa > 2:878750/1‑149 (MQ=255)
cacacTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCAcc > 1:239730/1‑149 (MQ=255)
acacTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCa < 1:3191754/149‑1 (MQ=255)
cacTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGACTCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCAt > 1:3694949/1‑149 (MQ=255)
acTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCAtt < 1:1200969/149‑1 (MQ=255)
ggTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCcgcg > 2:2226927/1‑149 (MQ=255)
gTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCCGCGa > 2:3179988/1‑149 (MQ=255)
ttCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCCGCGAt < 1:3128481/149‑1 (MQ=255)
tcgtcgTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCCGCGATc < 1:940514/149‑1 (MQ=255)
tcgtcgTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCCGCGATc < 2:1236080/149‑1 (MQ=255)
tcgtTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCCGCGATCGTa > 2:2671752/1‑149 (MQ=255)
|
TGATTGTCACTGTATTCGGCGATAAAAAAGTGGATTAGCTCAGTCACACCGCCTGGCGACATATACAGTTCAAATAATTTGCGCACTTCACCCACTTCATAGCCCGTCTCTTCAATCGCTTCTTTGCGAATACACACTTCCGGTTCGTCGTTATCCAGCAGCCCGGCGCAGCTTTCAATCAGCTGCCCGCTTTCATTGCCATTAACCCAGGTAGCGACACGGAACTGACGAATCAGAACCACGGTCTTTTTCTTCGTGTTGTACAGGAGGATCGTCGCACCATTGCCGCGATCGTA > CP009273/2576419‑2576714
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
