Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,136,368 |
G→T |
14.0% |
R386S (CGT→AGT) |
hybB ← |
putative hydrogenase 2 cytochrome b type component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,136,368 | 0 | G | T | 14.0%
| 919.5
/ 89.7
| 292 | R386S (CGT→AGT) | hybB | putative hydrogenase 2 cytochrome b type component |
| Reads supporting (aligned to +/- strand): ref base G (113/138); new base T (23/18); total (136/156) |
| Fisher's exact test for biased strand distribution p-value = 2.37e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.96e-01 |
Only 100 of 295 total aligned reads displayed.
TCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAAT > CP009273/3136221‑3136516
|
ttCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATATTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGAtt > 2:693647/1‑149 (MQ=255)
gtCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGAtt < 2:4177631/148‑1 (MQ=255)
tCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTa < 1:2289701/149‑1 (MQ=255)
ccATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACtattat < 1:1575436/149‑1 (MQ=255)
gcCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCgtttt > 1:3342666/1‑149 (MQ=255)
gcCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCgtttt < 2:1182739/149‑1 (MQ=255)
ccACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTATCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCgttttg > 2:2301684/1‑149 (MQ=255)
acaTGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCgttttgtt < 1:3972499/149‑1 (MQ=255)
aTGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCgttttgtttt > 2:4231937/1‑149 (MQ=255)
gTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTaaa > 2:2903854/1‑149 (MQ=255)
tACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAag > 1:4510707/1‑149 (MQ=255)
aCCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAagg < 1:1981863/149‑1 (MQ=255)
cggccgCCCACGCTTTCGAAACGACGCCATTGTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAaggag < 2:4730111/144‑1 (MQ=255)
gAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAggagga < 1:1709187/149‑1 (MQ=255)
aaGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGaa < 2:4055319/149‑1 (MQ=255)
aaGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGaa < 1:103657/149‑1 (MQ=255)
aaGCCCATGCTTTCGAAACGACGCCATTTTCGAGTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGaa < 2:3067930/149‑1 (MQ=255)
aGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAg < 2:734696/149‑1 (MQ=255)
gCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGt < 2:866932/149‑1 (MQ=255)
gCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGt < 1:3710328/149‑1 (MQ=255)
ccATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTAt < 1:177459/149‑1 (MQ=255)
cATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATc > 1:3811148/1‑149 (MQ=255)
cATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATc > 1:2866058/1‑149 (MQ=255)
tGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCgg > 1:3925484/1‑149 (MQ=255)
cTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCa < 1:550890/149‑1 (MQ=255)
tttCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAg > 1:3001739/1‑149 (MQ=255)
tttCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAg < 1:735310/149‑1 (MQ=255)
ttCGACACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGt < 2:4519221/149‑1 (MQ=255)
ttCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGt < 2:2084920/149‑1 (MQ=255)
tCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTa < 1:614907/149‑1 (MQ=255)
aaaCGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGAc > 2:2441302/1‑149 (MQ=255)
aaaCGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGAc < 1:4619400/149‑1 (MQ=255)
aaCGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACg > 2:2204059/1‑149 (MQ=255)
acgacgCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGa > 2:1007479/1‑149 (MQ=255)
acgCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATg < 1:4311305/149‑1 (MQ=255)
acgCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATg > 2:3758003/1‑149 (MQ=255)
acgCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATg < 2:1281681/149‑1 (MQ=255)
ccATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGt > 1:2053857/1‑149 (MQ=255)
cATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTa < 1:3513381/149‑1 (MQ=255)
cATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTa > 1:2532291/1‑149 (MQ=255)
tttCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGa < 2:2551242/149‑1 (MQ=255)
tttCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGa > 1:2657201/1‑149 (MQ=255)
ttCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGAt < 1:1029743/149‑1 (MQ=255)
gATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTa > 2:2016628/1‑149 (MQ=255)
gATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTa > 2:1910068/1‑149 (MQ=255)
aTTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTaa > 1:921102/1‑149 (MQ=255)
tttCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAg > 1:1247931/1‑149 (MQ=255)
tttCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAg > 2:148039/1‑149 (MQ=255)
ttCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAgc < 2:315738/149‑1 (MQ=255)
aaTCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCaaa > 2:3448064/1‑149 (MQ=255)
tCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAAtc > 1:1409006/1‑149 (MQ=255)
gATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAAtctc < 1:1119735/149‑1 (MQ=255)
aTGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCa < 2:27378/149‑1 (MQ=255)
tgagTAAATGCCCCACAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCaa < 2:4569155/146‑1 (MQ=255)
tGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCaa > 2:1318283/1‑149 (MQ=255)
cGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATa < 2:751576/149‑1 (MQ=255)
tAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGc > 1:2785822/1‑149 (MQ=255)
aaaTGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGcc < 1:4467306/149‑1 (MQ=255)
aaaTGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTACGCGCAAATCTCAATAGcc > 2:332177/1‑149 (MQ=255)
aaTGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCca > 2:3695072/1‑149 (MQ=255)
aaTGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCca < 2:3068599/149‑1 (MQ=255)
tGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCcaca < 2:3816999/149‑1 (MQ=255)
ccccTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACaaa > 1:3870612/1‑149 (MQ=255)
tCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCa < 1:3263457/149‑1 (MQ=255)
cAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCaa < 1:2978357/149‑1 (MQ=255)
cAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCaa < 2:3919626/149‑1 (MQ=255)
cAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCaa < 1:3490901/149‑1 (MQ=255)
aaTACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAAt > 2:2454108/1‑149 (MQ=255)
aaTACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAAt < 2:592582/149‑1 (MQ=255)
aaTACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAAt > 1:3166336/1‑149 (MQ=255)
tACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAg > 2:3846807/1‑149 (MQ=255)
tACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAg < 1:233234/149‑1 (MQ=255)
aCGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGa < 2:4688798/149‑1 (MQ=255)
cGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGaa < 1:4154372/149‑1 (MQ=255)
gTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATc > 2:4376469/1‑149 (MQ=255)
tACCGGATCAATAGTAATTCTCTGGCTCATGATTTGCTCTCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCTGCAGTAGAAGAATGAGTAAGATGTAAGCGCAAATCTCAATAGCCACAAAACAAATAGAAATCaa > 2:794221/1‑149 (MQ=255)
ccGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACa > 2:4781117/1‑149 (MQ=255)
ggATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGt < 2:4549542/149‑1 (MQ=255)
gATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGtt < 1:4607122/149‑1 (MQ=255)
gATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGtt > 1:1538417/1‑149 (MQ=255)
aTCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGttc < 1:4576595/149‑1 (MQ=255)
tCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGttct > 2:3643888/1‑149 (MQ=255)
aTAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTcc < 1:3604146/149‑1 (MQ=255)
aGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCa > 2:153033/1‑149 (MQ=255)
gTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACTATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAg > 2:1724169/1‑149 (MQ=255)
actctcTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTc < 2:4608539/147‑1 (MQ=255)
tctcTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCgg < 2:1365686/149‑1 (MQ=255)
ctctGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCggg < 2:2871240/149‑1 (MQ=255)
tctGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGa > 1:2385546/1‑149 (MQ=255)
tctGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGa > 1:3329596/1‑149 (MQ=255)
gCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTa < 1:4730935/149‑1 (MQ=255)
gCTCAGGCATTGCGCGCCTCCCGACGCTGATGAACGCTTTGTTTTACCGGAGGAAGTATCGGCAGGAGACGCATGAGTACGATGTAAGCGCAAAGCTCAATAGCCACAAAACCAACAGACATCAACAGTTCTTCCCAGGTCGGGAAGTa < 2:3298528/149‑1 (MQ=255)
tCGCCTCATGACGATTATGATCGTTTTGTTGTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAACTCAACAGTTCTTCCCAGGTCGGGACGTAGGCGTAAccgccg > 2:2819940/1‑149 (MQ=255)
cGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACcgccgc < 2:2941185/149‑1 (MQ=255)
ccTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGccc < 2:4510623/149‑1 (MQ=255)
cATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCACTAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCggg < 2:1888206/149‑1 (MQ=255)
aTGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCgggg < 1:487494/149‑2 (MQ=255)
aTGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGt > 1:2421317/1‑149 (MQ=255)
aTGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGt > 2:499609/1‑149 (MQ=255)
cGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGaa < 1:3108386/149‑1 (MQ=255)
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TCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAAT > CP009273/3136221‑3136516
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
