Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,233,271 |
G→T |
7.8% |
intergenic (+367/‑32) |
alx → / → sstT |
putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,233,271 | 0 | G | T | 7.8%
| 1084.4
/ 40.3
| 293 | intergenic (+367/‑32) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| Reads supporting (aligned to +/- strand): ref base G (152/118); new base T (11/12); total (163/130) |
| Fisher's exact test for biased strand distribution p-value = 5.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
Only 100 of 298 total aligned reads displayed.
GTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCG > CP009273/3233123‑3233419
|
gTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAACCACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAggg < 1:4670161/149‑1 (MQ=255)
tCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGa < 2:1622867/149‑1 (MQ=255)
cAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGAt < 1:4535234/149‑1 (MQ=255)
aaGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGAtgt > 2:692124/1‑149 (MQ=255)
aGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGAtgtg > 1:2323011/1‑149 (MQ=255)
aaaTGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCg > 2:188469/1‑149 (MQ=255)
aaTGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGa < 1:109719/149‑1 (MQ=255)
tGTAACCATTTAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGTAGGTGTTACTTTCATTATACTCTACCTTGCAAACACTTTGTTTCATCCTGTAAGATGCGTCGACAGAACGAACCAGGGATGTGCGaca < 1:1129124/149‑1 (MQ=255)
gTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGacaa > 2:3052855/1‑149 (MQ=255)
gTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCACGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGacaa > 2:505971/1‑149 (MQ=255)
tAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGacaac > 1:3379/1‑149 (MQ=255)
ccATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAAcaca < 1:2297674/149‑1 (MQ=255)
cATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACaa > 1:2865295/1‑149 (MQ=255)
aTTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAAcacact > 2:3559382/1‑147 (MQ=255)
aTTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAAt > 2:2902619/1‑149 (MQ=255)
aTTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAAt < 1:3818473/149‑1 (MQ=255)
ttcaGTGTCAAAATATGACCTCACTTTAAAATCCAGCATTTTTCGCTGCCCGAAGCTGTAACTGTCCTTAGACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATg < 1:4058261/146‑1 (MQ=255)
ttAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATg > 1:1490210/1‑149 (MQ=255)
aaGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGaa < 1:4414225/149‑1 (MQ=255)
aGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGaaa > 1:3862275/1‑149 (MQ=255)
gTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAg < 1:4540876/149‑1 (MQ=255)
tttCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGCCAACACAATGAAAgg > 2:438139/1‑149 (MQ=255)
ttCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGa > 2:4358225/1‑149 (MQ=255)
tCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGAt < 2:4312394/149‑1 (MQ=255)
cAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATc < 1:509861/149‑1 (MQ=255)
aaaTATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGa > 1:601026/1‑149 (MQ=255)
aaaTATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGa > 1:1948345/1‑149 (MQ=255)
atatGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGaaa < 1:1590763/149‑1 (MQ=255)
tGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCTCCAGGGATGTGCGACAACACAATGACAGGATCGAAAAAt > 1:1737848/1‑149 (MQ=255)
gACCTCTCTTTAAAATCCAGCA‑TTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGa > 1:3487790/1‑149 (MQ=255)
aCCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGa > 1:3918617/1‑149 (MQ=255)
aCCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGa > 1:2187665/1‑149 (MQ=255)
ctctctTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACt < 1:393626/149‑1 (MQ=255)
ctctTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTGTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTAc < 2:4685664/149‑1 (MQ=255)
tctTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACg > 2:1764836/1‑149 (MQ=255)
tctTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACg > 2:4185684/1‑149 (MQ=255)
tttAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCa > 1:4742974/1‑149 (MQ=255)
tttAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCa > 1:3427867/1‑149 (MQ=255)
aaaTCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGt > 2:2624601/1‑149 (MQ=255)
aaTCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACGTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGtt < 1:1182207/149‑1 (MQ=255)
ccAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCAc < 1:750114/149‑1 (MQ=255)
aGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCg > 1:2658213/1‑149 (MQ=255)
gCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCgg > 1:969635/1‑149 (MQ=255)
gCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCgg > 1:3575436/1‑149 (MQ=255)
aTTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCgggg < 2:219925/149‑1 (MQ=255)
aTTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCgggg < 2:1325982/149‑1 (MQ=255)
tttttCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGc < 1:697360/149‑1 (MQ=255)
ttCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTAt < 1:863726/149‑1 (MQ=255)
cGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTc > 2:920727/1‑149 (MQ=255)
gCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTcc < 1:3103445/149‑1 (MQ=255)
gCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTcc > 1:3109643/1‑149 (MQ=255)
cTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCg < 2:3999318/149‑1 (MQ=255)
cTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCg < 2:2035666/149‑1 (MQ=255)
cccGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCg < 2:427383/149‑1 (MQ=255)
ccGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGt < 2:823597/149‑1 (MQ=255)
cGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTc < 2:4556515/149‑1 (MQ=255)
gCTGTAACTTTCCTTATACTCGAACTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGc > 2:3883539/1‑149 (MQ=255)
cTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCt > 1:1667081/1‑149 (MQ=255)
aaCTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATg > 1:1336028/1‑149 (MQ=255)
tCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGc < 1:815653/149‑1 (MQ=255)
ccTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGcc > 1:2260404/1‑149 (MQ=255)
ccTTATACTCGACCGTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGcc < 2:4476753/149‑1 (MQ=255)
ttATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTg > 2:1270914/1‑149 (MQ=255)
tataCTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTgg < 1:2793988/149‑1 (MQ=255)
ataCTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGt > 2:1217845/1‑149 (MQ=255)
tCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTaaaa < 2:903464/149‑1 (MQ=255)
aCCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACaa > 1:4569840/1‑149 (MQ=255)
acTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACaaa < 2:3490693/148‑1 (MQ=255)
cTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAAt > 1:1446121/1‑149 (MQ=255)
cTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAAt < 1:2107933/149‑1 (MQ=255)
ttGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATc > 2:3667337/1‑149 (MQ=255)
cAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTg > 2:815853/1‑149 (MQ=255)
aaaCACTTTGTTACATCCTGAACGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTgg < 1:3386759/149‑1 (MQ=255)
aaaCACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTgg < 1:3153879/149‑1 (MQ=255)
acTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCgg > 1:2375724/1‑149 (MQ=255)
cTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGc > 1:2906237/1‑149 (MQ=255)
ttACATCCTGAAAGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGt < 1:4139723/149‑1 (MQ=255)
ttACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGt < 2:576148/149‑1 (MQ=255)
tACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGtt > 1:2958634/1‑149 (MQ=255)
cATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCt < 2:1468954/149‑1 (MQ=255)
aTCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTg > 1:3976836/1‑149 (MQ=255)
ccTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTggg < 2:2359220/149‑1 (MQ=255)
tGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGa < 2:1156710/149‑1 (MQ=255)
aaGATGCGTCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGAttc > 2:4627101/1‑149 (MQ=255)
aGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGAttct > 1:425856/1‑149 (MQ=255)
aGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGAttct > 1:2500357/1‑149 (MQ=255)
gATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAGATCCTGGTCGGCCTTGTTCTGGGGAttctt > 2:3770104/1‑149 (MQ=255)
gATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGAttctt > 2:2125727/1‑149 (MQ=255)
aTGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGAttcttc < 2:2790432/149‑1 (MQ=255)
tCGACAGAACGCACCAGGTATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCa < 1:1247944/149‑1 (MQ=255)
gACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATg > 1:2609325/1‑149 (MQ=255)
gACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATg < 1:4616675/149‑1 (MQ=255)
gACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATg < 1:2218737/149‑1 (MQ=255)
gAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGAtc > 1:2010794/1‑149 (MQ=255)
gAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGAtc > 2:3686080/1‑149 (MQ=255)
gAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGAtc < 2:3379/149‑1 (MQ=255)
aaCGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGAtct > 1:3294045/1‑149 (MQ=255)
ccAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAAc < 2:4124632/149‑1 (MQ=255)
cAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAAcc > 2:3150646/1‑149 (MQ=255)
gATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCcgcg > 1:1566631/1‑149 (MQ=255)
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GTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAATGACTACGCAACGTTCACCGGGGCTATTCCGGCGTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCG > CP009273/3233123‑3233419
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
