Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F159 I0 R1
|
879 |
305.9 |
9588012 |
96.6% |
9262019 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
615,143 |
C→A |
28.2% |
T171T (ACG→ACT) |
fepC ← |
iron‑enterobactin transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 615,143 | 0 | C | A | 28.2%
| 709.1
/ 237.9
| 326 | T171T (ACG→ACT) | fepC | iron‑enterobactin transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (116/117); new base A (58/35); total (174/152) |
| Fisher's exact test for biased strand distribution p-value = 4.90e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 328 total aligned reads displayed.
TTCCCTTCCCGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGCTTC > CP009273/614994‑615292
|
tcccttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCg > 1:1874535/1‑150 (MQ=255)
cttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTgg > 2:739783/1‑150 (MQ=255)
cttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTgg < 2:3943221/150‑1 (MQ=255)
tcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGTAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGt < 1:1918113/150‑1 (MQ=255)
cccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGtt > 1:616186/1‑150 (MQ=255)
cccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGtt < 2:1814022/150‑1 (MQ=255)
ccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTtc > 1:3353339/1‑150 (MQ=255)
cGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTtcg > 1:4207038/1‑150 (MQ=255)
gcaatgcaatCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTtcgt > 2:3250075/1‑150 (MQ=255)
tgcaatCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCTAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGag < 1:3723127/150‑1 (MQ=255)
tgcaatCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGag > 1:312810/1‑150 (MQ=255)
caatCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagca < 2:4373914/150‑1 (MQ=255)
aatCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcag < 2:2201864/150‑1 (MQ=255)
cAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCAt > 2:4586310/1‑150 (MQ=255)
aaaTGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATa > 2:422559/1‑150 (MQ=255)
aaaTGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATa > 2:1340712/1‑150 (MQ=255)
aaTGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATaa < 1:4700638/150‑1 (MQ=255)
aTGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAAt > 1:512050/1‑150 (MQ=255)
ggctggcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTg < 2:3875690/150‑1 (MQ=255)
tggcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCg > 2:1862066/1‑150 (MQ=255)
gTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTc > 2:1908435/1‑150 (MQ=255)
gTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTc > 2:2730762/1‑150 (MQ=255)
tAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTcc < 2:2713595/150‑1 (MQ=255)
tAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTcc > 2:2161429/1‑150 (MQ=255)
aaCGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCt > 2:2124599/1‑150 (MQ=255)
aCGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACACCTCCAGCAAATCAATCTGATGACGGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTg < 2:3422196/150‑1 (MQ=255)
aCGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTg < 2:4628553/150‑1 (MQ=255)
gACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTggg > 2:1704735/1‑150 (MQ=255)
aGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCa > 2:134564/1‑150 (MQ=255)
aGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCa < 1:1215308/150‑1 (MQ=255)
aGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCa < 1:1540923/150‑1 (MQ=255)
ccTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCa > 1:3072903/1‑150 (MQ=255)
ccTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCa < 2:4442021/150‑1 (MQ=255)
tGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCAcc > 2:509389/1‑150 (MQ=255)
gATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCa > 1:4085336/1‑150 (MQ=255)
ttAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATc > 2:1463266/1‑150 (MQ=255)
aaGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgc < 1:3273257/150‑1 (MQ=255)
aGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgcg > 2:475845/1‑150 (MQ=255)
gATCGTGCAGCACCGCCGCCAGGGGATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGa > 1:2298334/1‑150 (MQ=255)
tCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATc > 1:2388082/1‑150 (MQ=255)
gTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCa < 2:3189096/150‑1 (MQ=255)
gcagcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcg < 2:1021258/150‑1 (MQ=255)
agcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgct < 1:4223824/150‑1 (MQ=255)
gcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgctc < 2:914321/150‑1 (MQ=255)
gcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgctc < 1:4132850/150‑1 (MQ=255)
ccgccgCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgctcgct > 1:2815768/1‑150 (MQ=255)
gccgccAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTgg > 1:4261978/1‑150 (MQ=255)
cgccAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCg > 2:3609857/1‑150 (MQ=255)
cgccAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCg > 1:96043/1‑150 (MQ=255)
cgccAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCg > 2:1198163/1‑150 (MQ=255)
ggTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTcc > 2:244348/1‑150 (MQ=255)
taGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGNCa < 2:1300502/150‑1 (MQ=255)
tttCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAggg < 1:102952/150‑1 (MQ=255)
ttCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGt > 1:282471/1‑150 (MQ=255)
ttCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGt > 2:4213211/1‑150 (MQ=255)
tCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTa < 2:4555427/150‑1 (MQ=255)
gcgGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATc < 1:1457404/150‑1 (MQ=255)
cgGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATcc < 2:2272627/150‑1 (MQ=255)
ggTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCa < 1:4057567/150‑1 (MQ=255)
cAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCt < 2:3789347/150‑1 (MQ=255)
aGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCtt > 1:439475/1‑150 (MQ=255)
gTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCttt < 2:4331251/150‑1 (MQ=255)
ttCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCAAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTg < 1:2745056/150‑1 (MQ=255)
cGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGAt < 1:2124599/150‑1 (MQ=255)
cTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCt < 2:1617259/150‑1 (MQ=255)
cTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCt < 2:626728/150‑1 (MQ=255)
ttAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTg < 1:1290996/150‑1 (MQ=255)
tAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGc < 1:3579074/150‑1 (MQ=255)
tAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGc > 2:611995/1‑150 (MQ=255)
gaacaacTCCAGCACATCAATCTGCTGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGAGCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGc < 2:2655216/149‑1 (MQ=255)
aacaacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGcc < 1:2020967/150‑1 (MQ=255)
acaacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCa < 1:3447316/150‑1 (MQ=255)
acaacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCa < 1:729248/150‑1 (MQ=255)
acaacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCa < 1:1313162/150‑1 (MQ=255)
caacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAg > 1:3694572/1‑150 (MQ=255)
aacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGATTTGATCTGCCAGa > 2:1535622/1‑150 (MQ=255)
cTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATg > 1:2585935/1‑150 (MQ=255)
cTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATg < 2:407209/150‑1 (MQ=255)
tCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGa > 1:3877189/1‑150 (MQ=255)
cAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGt > 1:1369690/1‑150 (MQ=255)
aGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGtt < 1:4289753/150‑1 (MQ=255)
aGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGGTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGtt > 1:2540401/1‑150 (MQ=255)
aGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGtt < 1:1707439/150‑1 (MQ=255)
aatcaatcTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTc > 1:3177221/1‑150 (MQ=255)
tcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTccc < 2:3548583/150‑1 (MQ=255)
aatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGt > 2:1978644/1‑150 (MQ=255)
aatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGt < 1:4747164/150‑1 (MQ=255)
gatgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCt > 2:709406/1‑150 (MQ=255)
gatgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCt > 1:2634535/1‑150 (MQ=255)
gatgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCt > 1:1602667/1‑150 (MQ=255)
atgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTg < 2:526625/150‑1 (MQ=255)
gaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCa > 2:3823087/1‑150 (MQ=255)
gATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGc > 1:3816566/1‑150 (MQ=255)
gATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGc > 2:3337194/1‑150 (MQ=255)
tCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTc < 1:4492504/150‑1 (MQ=255)
tCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTc < 2:3671371/150‑1 (MQ=255)
agccagGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGAAGAGTTATTCCCGTGGCCTGCATTGCTTTCGtt < 2:3003176/150‑1 (MQ=255)
gccagGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTa < 1:4563548/150‑1 (MQ=255)
ggTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGc > 2:1539014/1‑150 (MQ=255)
gTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGct > 1:2526054/1‑150 (MQ=255)
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TTCCCTTCCCGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGCTTC > CP009273/614994‑615292
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
