Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F204 I0 R1
|
1155 |
255.8 |
8356456 |
95.7% |
7997128 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
615,143 |
C→A |
6.9% |
T171T (ACG→ACT) |
fepC ← |
iron‑enterobactin transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 615,143 | 0 | C | A | 6.9%
| 946.7
/ 27.8
| 245 | T171T (ACG→ACT) | fepC | iron‑enterobactin transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (116/112); new base A (9/8); total (125/120) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 247 total aligned reads displayed.
TTCCCTTCCCGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGCTTC > CP009273/614994‑615292
|
tcccttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCg < 1:354806/150‑1 (MQ=255)
tcccttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCg < 1:2004705/150‑1 (MQ=255)
ccttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTg > 1:1361595/1‑150 (MQ=255)
ccttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTg > 1:1657602/1‑150 (MQ=255)
cttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTgg > 2:4135340/1‑150 (MQ=255)
ttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTggg > 2:1320743/1‑150 (MQ=255)
ttcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTggg > 1:4063500/1‑150 (MQ=255)
tcccGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGt < 2:2520974/150‑1 (MQ=255)
caatgcaatCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTtcgtc > 1:2028477/1‑150 (MQ=255)
aatCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcag < 1:895744/150‑1 (MQ=255)
tCAAATGGCTGGCGTAACGCCAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAgcagca > 1:547140/1‑150 (MQ=255)
tCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAgcagca < 2:1248592/150‑1 (MQ=255)
aaaTGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATa > 2:2944563/1‑150 (MQ=255)
aagggctggcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATaa < 2:798165/147‑1 (MQ=255)
aTGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAAt < 1:2818878/150‑1 (MQ=255)
tggctggcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAAtt > 2:377761/1‑150 (MQ=255)
tggctggcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAAtt > 1:1279694/1‑150 (MQ=255)
gctggcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGc < 2:3419625/150‑1 (MQ=255)
gctggcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGc < 2:1489813/150‑1 (MQ=255)
gcGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGtt < 1:3652981/150‑1 (MQ=255)
gTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTc > 2:632836/1‑150 (MQ=255)
gTAACGACAGGCCTGATTAAGATCGTACAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTc > 2:2021363/1‑150 (MQ=255)
aaCGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCt < 2:3518598/150‑1 (MQ=255)
cAGGCCTGATTAAGCTCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGcc < 1:2538584/150‑1 (MQ=255)
aGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCa < 1:1046227/150‑1 (MQ=255)
gCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGc > 1:715949/1‑150 (MQ=255)
cTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCAc > 2:2344471/1‑150 (MQ=255)
aTTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCAt < 1:1740898/150‑1 (MQ=255)
aTTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCAt > 2:1929708/1‑150 (MQ=255)
ttAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATc > 1:2989610/1‑150 (MQ=255)
tCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATc < 2:2791458/150‑1 (MQ=255)
cGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATcc > 2:603326/1‑150 (MQ=255)
gTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCa > 2:2685255/1‑150 (MQ=255)
agcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgct > 1:803696/1‑150 (MQ=255)
agcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgct < 2:912920/150‑1 (MQ=255)
agcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgct < 2:912831/150‑1 (MQ=255)
gcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgctc < 1:2192248/150‑1 (MQ=255)
gcaCCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgctc > 1:2683830/1‑150 (MQ=255)
cgccgcCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTg < 2:2444285/150‑1 (MQ=255)
cAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTg > 2:3160650/1‑150 (MQ=255)
cAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTg > 2:3160660/1‑150 (MQ=255)
tataGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGc < 2:3609000/150‑1 (MQ=255)
taGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCa > 1:685319/1‑150 (MQ=255)
aGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAg < 2:1717821/150‑1 (MQ=255)
gCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGa > 2:2756659/1‑150 (MQ=255)
cgcgGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTAt > 1:2891417/1‑150 (MQ=255)
cgcgGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTAt > 1:1254345/1‑150 (MQ=255)
cgcgGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTAt > 1:1643030/1‑150 (MQ=255)
gcgGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATc < 1:3356663/150‑1 (MQ=255)
ttCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACg < 1:2028711/150‑1 (MQ=255)
ttCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCAACGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACg > 2:3803400/1‑150 (MQ=255)
cAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCt > 1:1338427/1‑150 (MQ=255)
gTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCttt > 2:3972029/1‑150 (MQ=255)
gTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCttt > 2:109988/1‑150 (MQ=255)
ttCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTg > 1:1595091/1‑150 (MQ=255)
tCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGa < 2:1183630/150‑1 (MQ=255)
tCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGa < 2:1603665/150‑1 (MQ=255)
cGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGAt > 1:1513289/1‑150 (MQ=255)
cTTAACAACTCCATCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCTTAATTGCCGTTTCCTGGGCCAGCACCATCGCTAGCCACGCTCGCTGGCGTTGTCCGCCAGATATGGTATCCACGCTTTGATCt < 2:4075027/150‑1 (MQ=255)
ttAACAACGCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTg < 2:501586/150‑1 (MQ=255)
tAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCCGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGGTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGc > 1:1066318/1‑150 (MQ=255)
caacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGAGCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAg < 2:558932/150‑1 (MQ=255)
aacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGa > 1:587215/1‑150 (MQ=255)
aacTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGa > 2:2656922/1‑150 (MQ=255)
acTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGAt > 2:731321/1‑150 (MQ=255)
acTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGAt > 2:2820499/1‑150 (MQ=255)
cTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATg < 2:1793258/150‑1 (MQ=255)
cTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATg > 2:1334036/1‑150 (MQ=255)
cTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATg > 2:3409651/1‑150 (MQ=255)
ccAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAg > 2:3868658/1‑150 (MQ=255)
ccAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAg > 2:2813036/1‑150 (MQ=255)
cAGCAAATCAATCTGATGACTGATATCCAGCCTGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGCTCCACGCTCGATGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGt < 1:1161345/150‑1 (MQ=255)
cAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGt < 1:25519/150‑1 (MQ=255)
aGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGtt > 1:3790025/1‑150 (MQ=255)
aaaTCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTAtt < 1:1193251/150‑1 (MQ=255)
aaaTCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTAtt > 1:1224437/1‑150 (MQ=255)
aatcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTc < 1:1947848/150‑1 (MQ=255)
aatcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTc > 1:1783986/1‑150 (MQ=255)
tcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTGTCCTGGGCCAGCACCATCGCGAGCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTccc < 2:2625945/150‑1 (MQ=255)
caatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCg < 2:1309109/150‑1 (MQ=255)
caatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCg < 1:3270371/150‑1 (MQ=255)
caatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCg > 2:2262030/1‑150 (MQ=255)
aatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGt > 1:3867800/1‑150 (MQ=255)
aatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGt > 1:3975320/1‑150 (MQ=255)
tgatgaCTGATATCCAGCCAGGGCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGcc < 2:2179384/150‑1 (MQ=255)
aCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCAt < 1:321727/150‑1 (MQ=255)
tGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTg < 1:3474872/150‑1 (MQ=255)
atatCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCt < 1:825212/150‑1 (MQ=255)
atatCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGATCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTGTGATCTGCCAGATGAGTTATTCCCGAGGCCTGCATAGCt > 1:878454/1‑150 (MQ=255)
tCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTc < 2:210461/150‑1 (MQ=255)
cagccagGTAGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGt > 2:1006711/1‑150 (MQ=255)
agccagGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGtt < 2:1145750/150‑1 (MQ=255)
ccagGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTAc < 2:2873941/150‑1 (MQ=255)
cagGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCCGCACCATCGCGCTCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTAcc < 1:574033/150‑1 (MQ=255)
agGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCg < 1:2204975/150‑1 (MQ=255)
agGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCg > 1:3165807/1‑150 (MQ=255)
agGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCg < 2:1419702/150‑1 (MQ=255)
gTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGct < 1:1708251/150‑1 (MQ=255)
gTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGct < 1:4135340/150‑1 (MQ=255)
tCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGctt < 2:3582444/150‑1 (MQ=255)
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TTCCCTTCCCGCAATGCAATCAAATGGCTGGCGTAACGACAGGCCTGATTAAGATCGTGCAGCACCGCCGCCAGGGTATAGCCTTTTTCGCGGTTCAGTTCGCTTAACAACTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTCGCTGGCGTTGTCCGCCAGAAAGGGTATCCACGCTTTGATCTGCCAGATGAGTTATTCCCGTGGCCTGCATTGCTTTCGTTACCGCTTC > CP009273/614994‑615292
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
