Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F159 I0 R1
|
879 |
305.9 |
9588012 |
96.6% |
9262019 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,725,272 |
G→T |
25.9% |
A643A (GCG→GCT) |
lhr → |
putative ATP‑dependent helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,725,272 | 0 | G | T | 25.9%
| 670.2
/ 200.1
| 299 | A643A (GCG→GCT) | lhr | putative ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): ref base G (122/99); new base T (40/38); total (162/137) |
| Fisher's exact test for biased strand distribution p-value = 5.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 308 total aligned reads displayed.
TCATGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGTGATGA > CP009273/1725123‑1725421
|
tCATGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTCCCGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCg > 2:1259382/1‑150 (MQ=255)
aTGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGa < 2:576161/150‑1 (MQ=255)
tGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGAt < 2:1499540/150‑1 (MQ=255)
tGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGAt < 2:2275256/150‑1 (MQ=255)
tGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGAt < 2:4751850/150‑1 (MQ=255)
tGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGGGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGAt > 2:744623/1‑150 (MQ=255)
ggCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATg < 1:50891/150‑1 (MQ=255)
ggCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATg < 2:2688935/150‑1 (MQ=255)
gCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATgg < 1:3959257/150‑1 (MQ=255)
ccAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGtt < 1:3144441/150‑1 (MQ=255)
gCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCtt < 2:4175130/150‑1 (MQ=255)
aaaTCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCtttt > 1:755874/1‑150 (MQ=255)
cccGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGa < 1:2277393/150‑1 (MQ=255)
cccGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGa < 2:1345759/150‑1 (MQ=255)
gATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTTGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGAATATAGGCGCTTTTCATAAATTGCTTGCGGATTGCGCGTTCTTTTCAGGGACTaat > 1:2481036/1‑148 (MQ=255)
gATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTAtt > 2:4374586/1‑150 (MQ=255)
gATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTAtt > 1:777892/1‑150 (MQ=255)
aTCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTGATTTTCTGGCGGCTGGCGCGTTATTTTACGGGACTAtta > 1:3600986/1‑149 (MQ=255)
aTCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTc < 2:127594/150‑1 (MQ=255)
aTCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTc > 2:4246000/1‑150 (MQ=255)
cAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCAGTTGCTGGCGGATGGCGGGGTATTTTACGGGAcgaatacc > 1:1201300/1‑143 (MQ=255)
cAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGGAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTccc > 2:1586236/1‑150 (MQ=255)
cAGGTGATTGTGACTCCTGCTCCGGGTCGCTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTccc < 1:1731178/150‑1 (MQ=255)
gTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTACCGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCg > 2:2059563/1‑150 (MQ=255)
tGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGt < 2:2265866/150‑1 (MQ=255)
gATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGtg < 1:2701705/150‑1 (MQ=255)
aCTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCa < 1:1590540/150‑1 (MQ=255)
aCTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCa < 2:1626708/150‑1 (MQ=255)
aCTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCa < 2:3178073/150‑1 (MQ=255)
ccTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCagaa < 2:3034510/150‑1 (MQ=255)
ccTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCagaa < 2:2537432/150‑1 (MQ=255)
cTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCagaag < 2:4519404/150‑1 (MQ=255)
tGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCagaaga < 1:4458777/150‑1 (MQ=255)
tGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTAGTCCCCCGTGGCTGGCagaaga < 2:3120290/150‑1 (MQ=255)
cTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGaaa < 1:1616124/150‑1 (MQ=255)
tCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTACCGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTAATTTGCTGGCGGATGGCGCGGTCGTTTCCGGGACTATTCCCCCGTGGCTGGCAGTAGaaaa > 1:1664178/1‑150 (MQ=255)
tCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGaaaa > 1:368606/1‑150 (MQ=255)
tCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGaaaa > 2:1720002/1‑150 (MQ=255)
cGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATa < 2:685633/150‑1 (MQ=255)
cGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATa < 1:1968827/150‑1 (MQ=255)
gggTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTTCTGGCGGATGGCGCGTTCTTTTACGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATAc > 1:937792/1‑150 (MQ=255)
cGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATc < 1:2956865/150‑1 (MQ=255)
cGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATc > 2:1679707/1‑150 (MQ=255)
tGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCaa > 1:3833533/1‑150 (MQ=255)
gCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAat < 2:3510106/150‑1 (MQ=255)
ccGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAatat > 2:516948/1‑150 (MQ=255)
cGGCTCCCCTTCTGGAGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTACGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATAtt > 2:2826877/1‑150 (MQ=255)
tgCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTc > 1:2128903/2‑150 (MQ=255)
ggCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTTCTGGCGGATGGCGCGTTCTTTTACGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATAGCCCATATTc > 1:2808721/1‑150 (MQ=255)
ggCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTc > 1:546050/1‑150 (MQ=255)
ggCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTc < 2:2728776/150‑1 (MQ=255)
gCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCa < 2:1165473/150‑1 (MQ=255)
cTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAg > 2:1868417/1‑150 (MQ=255)
cccTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAgggg < 1:2548206/150‑1 (MQ=255)
ccTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTAATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGt > 1:85916/1‑150 (MQ=255)
cTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATTGCGCGGTCTTTTACGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATAGCCAATATTAAGGGGttgat > 1:468408/1‑150 (MQ=255)
cTGGCGTGGTGAAGGGACCGGACGTCCGGCTCAATAAGGCGAGATGAACGGCGATTTTCTTCATTTGCAGGCGGATGGCGCGATCTTATCCGGCACTATACCCCCGAGGCAGGCAGAACAAAATACGATACCCAATATTCCCGGGtagat > 2:2360010/1‑150 (MQ=255)
tGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGttgatt > 1:4179272/1‑150 (MQ=255)
tGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGttgatt < 2:4118553/150‑1 (MQ=255)
gCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGttgattga < 1:1483046/150‑1 (MQ=255)
gtggtgAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTACCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTgagg > 1:4246659/1‑150 (MQ=255)
tggtgAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTgagga > 2:3919571/1‑150 (MQ=255)
ggtgAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTgaggag < 2:3822337/150‑1 (MQ=255)
ggtgAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTgaggag > 1:2212541/1‑150 (MQ=255)
gtgAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGagc < 1:429494/150‑1 (MQ=255)
gAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGagcag < 2:346172/150‑1 (MQ=255)
gTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCa < 1:645487/150‑1 (MQ=255)
ggACGTCCGGCTGAATTAGGCGAGCTGCTCGGCGATTTTCGTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAAcgcg < 1:3151491/150‑1 (MQ=255)
ggACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAAcgcg > 2:2470642/1‑150 (MQ=255)
gTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACgg < 1:4061649/150‑1 (MQ=255)
ggCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCAt < 1:1817115/150‑1 (MQ=255)
ggCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCACCCGTGGCTGGCAGAAGAAAATACGATAGCCACTATTCAGGGGGTGATTGAGGAGCAGCGCAACGCGACGGGCAt > 2:508608/1‑150 (MQ=255)
tGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGt > 1:3940263/1‑150 (MQ=255)
tGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGt > 1:704864/1‑150 (MQ=255)
gAATGAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCATAAGAATATACTATCGCCTATATTCAGTGGTTTATTGAGGAGCAGCGCAACGCGACGGGCATCGtt < 1:2851879/150‑1 (MQ=255)
aaTTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCACCGCGACGGGCATCGTTc > 2:4465566/1‑150 (MQ=255)
aaTTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTc < 2:3698523/150‑1 (MQ=255)
aaTTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTc > 2:4280157/1‑150 (MQ=255)
aaTTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTc > 1:3023934/1‑150 (MQ=255)
ttAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCg < 1:2340071/150‑1 (MQ=255)
tAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCgg > 1:1511631/1‑150 (MQ=255)
ggCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCgggg > 1:3484609/1‑150 (MQ=255)
tCGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATc < 1:3306075/150‑1 (MQ=255)
cGGCGATTTTCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCt > 2:4736920/1‑150 (MQ=255)
cGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCt > 2:4086276/1‑150 (MQ=255)
cGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTATTTTACGGGACTATTACCCCGTGGCTGGCAGAAGAAAATAAGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCAACt > 1:1304301/1‑150 (MQ=255)
cGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGt < 2:323462/150‑1 (MQ=255)
cGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGt > 1:678320/1‑150 (MQ=255)
cGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGt < 2:2548708/150‑1 (MQ=255)
tttCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTc < 1:1881370/150‑1 (MQ=255)
tttCTTCATTTGCTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTc < 1:4276031/150‑1 (MQ=255)
tttCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTc < 2:3736187/150‑1 (MQ=255)
cATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACgg > 2:874283/1‑150 (MQ=255)
ttGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGc > 1:955625/1‑150 (MQ=255)
cTGGCTGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGt < 1:999321/150‑1 (MQ=255)
cTGGCTGATGGCGCGTTATTTTCCGGGACTATTCCCCCGGGGCTGGCATAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGt < 1:1000278/150‑1 (MQ=255)
gCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGtgat < 1:167347/150‑1 (MQ=255)
gCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGtgat < 1:2095684/150‑1 (MQ=255)
gCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGtgat < 2:779873/150‑1 (MQ=255)
ggATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGtgatga > 1:653487/1‑150 (MQ=255)
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TCATGGCGGATCCAGCAAATCACCCGCGATCAGGTGATTGTGACTCCTGCTCCGGGTCGTTCTGCCCGGCTCCCCTTCTGGCGTGGTGAAGGTAACGGACGTCCGGCTGAATTAGGCGAGATGATCGGCGATTTTCTTCATTTGCTGGCGGATGGCGCGTTCTTTTCCGGGACTATTCCCCCGTGGCTGGCAGAAGAAAATACGATCGCCAATATTCAGGGGTTGATTGAGGAGCAGCGCAACGCGACGGGCATCGTTCCGGGGAGTCGCCATCTGGTCCTCGAACGGTGCCGTGATGA > CP009273/1725123‑1725421
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
