Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F342 I0 R1 1331 225.9 7641038 95.8% 7320114 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 628,980 T→A 9.3% intergenic (‑47/‑62) ybdH ← / → ybdL putative oxidoreductase/methionine aminotransferase, PLP‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273628,9800TA 9.3% 616.1 / 44.5 204intergenic (‑47/‑62)ybdH/ybdLputative oxidoreductase/methionine aminotransferase, PLP‑dependent
Reads supporting (aligned to +/- strand):  ref base T (116/69);  new base A (8/11);  total (124/80)
Fisher's exact test for biased strand distribution p-value = 8.93e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01

Only 100 of 209 total aligned reads displayed.

TTGTTCATCAGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCA  >  CP009273/628835‑629127
                                                                                                                                                 |                                                                                                                                                   
ttgttCATCAGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGc                                                                                                                                                   <  1:594435/148‑1 (MQ=255)
ttgttCATCAGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGc                                                                                                                                                   >  1:1761640/1‑148 (MQ=255)
   ttCATCAGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCaa                                                                                                                                                >  1:770992/1‑148 (MQ=255)
    tcatcaGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCaaa                                                                                                                                               <  1:837433/148‑1 (MQ=255)
       tcaGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATAc                                                                                                                                            >  1:3310521/1‑148 (MQ=255)
         aGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTACACGTCTTGATTGCCAAATACTa                                                                                                                                          <  1:1977435/148‑1 (MQ=255)
          gTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAg                                                                                                                                         >  2:793497/1‑148 (MQ=255)
           tGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGc                                                                                                                                        <  2:1190067/148‑1 (MQ=255)
           tGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATAGCCAAATACTAGc                                                                                                                                        >  2:58138/1‑148 (MQ=255)
            gAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGACGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACAAGCa                                                                                                                                       >  1:1327787/1‑148 (MQ=255)
                aaaTCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCgt                                                                                                                                   >  1:1960127/1‑148 (MQ=255)
                aaaTCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATAGCCAAATACTAGCATCgt                                                                                                                                   >  2:1421551/1‑148 (MQ=255)
                 aaTCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCgtg                                                                                                                                  <  1:1702590/148‑1 (MQ=255)
                   tCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGtt                                                                                                                                <  1:2495174/148‑1 (MQ=255)
                      tGCAGGTGATTTACACTTCCTGTATGTGAAAAGTAGTTAGCGGGGCCGACGACCACGCGGATAGGATTGTGTGGCATTTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTtata                                                                                                                             <  2:2327485/148‑1 (MQ=255)
                         aGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTg                                                                                                                          <  2:3444774/148‑1 (MQ=255)
                          ggTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGc                                                                                                                         >  2:1791285/1‑148 (MQ=255)
                              aTTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTc                                                                                                                     >  2:2433283/1‑148 (MQ=255)
                              aTTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTc                                                                                                                     >  2:920533/1‑148 (MQ=255)
                               ttGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCa                                                                                                                    <  1:961342/148‑1 (MQ=255)
                                 gAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAac                                                                                                                  >  1:2307702/1‑148 (MQ=255)
                                   aaCTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAacac                                                                                                                >  1:3796727/1‑148 (MQ=255)
                                    aCTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACg                                                                                                               >  1:2776276/1‑148 (MQ=255)
                                      ttCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCa                                                                                                             <  1:363128/148‑1 (MQ=255)
                                        ccTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAAc                                                                                                           <  2:3138906/148‑1 (MQ=255)
                                               gtgAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATAGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCa                                                                                                    >  2:1908313/1‑148 (MQ=255)
                                                   aaaGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTa                                                                                                >  2:3038823/1‑148 (MQ=255)
                                                   aaaGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTa                                                                                                >  2:3714823/1‑148 (MQ=255)
                                                   aaaGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTa                                                                                                >  2:1097712/1‑148 (MQ=255)
                                                     agtagtTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACa                                                                                              >  1:2222785/1‑148 (MQ=255)
                                                     agtagtTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACa                                                                                              <  2:417653/148‑1 (MQ=255)
                                                     agtagtTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACa                                                                                              <  1:435800/148‑1 (MQ=255)
                                                     agtagtTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATAGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACa                                                                                              <  2:1399259/148‑1 (MQ=255)
                                                     agtagtTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATAGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACa                                                                                              <  2:2437477/148‑1 (MQ=255)
                                                           tAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATaaaa                                                                                        >  2:3774641/1‑148 (MQ=255)
                                                           tAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATaaaa                                                                                        <  2:3242626/148‑1 (MQ=255)
                                                            aGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATaaaaa                                                                                       <  2:483277/148‑1 (MQ=255)
                                                            aGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATAGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATaaaaa                                                                                       <  1:1438515/148‑1 (MQ=255)
                                                               cGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGa                                                                                    <  1:2944375/148‑1 (MQ=255)
                                                                 ggCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACa                                                                                  >  1:211813/1‑148 (MQ=255)
                                                                 ggCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACa                                                                                  >  1:622373/1‑148 (MQ=255)
                                                                 ggCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACa                                                                                  >  1:2540325/1‑148 (MQ=255)
                                                                     gacgacCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATa                                                                              >  1:354754/1‑148 (MQ=255)
                                                                        gacCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAAcc                                                                           <  1:1601770/148‑1 (MQ=255)
                                                                             cgcgGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTg                                                                      <  2:238908/148‑1 (MQ=255)
                                                                              gcgGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGa                                                                     <  1:340420/148‑1 (MQ=255)
                                                                               cgGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGAt                                                                    <  2:3310521/148‑1 (MQ=255)
                                                                                  aTAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTcc                                                                 >  2:1731401/1‑148 (MQ=255)
                                                                                   tAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCca                                                                >  2:3373692/1‑148 (MQ=255)
                                                                                      gATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACaa                                                             >  2:1224261/1‑148 (MQ=255)
                                                                                      gATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACaa                                                             >  2:3152285/1‑148 (MQ=255)
                                                                                         tgtgAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGc                                                          >  1:2282150/1‑148 (MQ=255)
                                                                                           tgAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCaa                                                        <  2:2123192/148‑1 (MQ=255)
                                                                                           tgAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCaa                                                        <  1:1144727/148‑1 (MQ=255)
                                                                                           tgAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCaa                                                        <  1:13936/148‑1 (MQ=255)
                                                                                           tgAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACAAGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCAACAAAGCaa                                                        >  2:2967338/1‑148 (MQ=255)
                                                                                               gcttgttgtgttgTCCTTATTTTTTTATTTAGAAATCTAAACGTCTTGATTGCAAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTTATTCCACAAAGCAAACtt                                                    <  1:722979/145‑1 (MQ=255)
                                                                                               gCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACtt                                                    >  2:353512/1‑148 (MQ=255)
                                                                                                cATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTc                                                   <  1:2418145/148‑1 (MQ=255)
                                                                                                  tgttgtgttgTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCca                                                 >  2:439207/1‑148 (MQ=255)
                                                                                                     tgtgttgtCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCTACAAAGCAAACTTCCACaa                                              <  2:857057/148‑1 (MQ=255)
                                                                                                     tgtgttgtCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACaa                                              <  2:855978/148‑1 (MQ=255)
                                                                                                        gttgtCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACtt                                           >  1:3217775/1‑148 (MQ=255)
                                                                                                        gttgtCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACtt                                           <  1:3413765/148‑1 (MQ=255)
                                                                                                          tgtCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTgg                                         >  1:669709/1‑148 (MQ=255)
                                                                                                            tCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGca                                       >  1:170627/1‑148 (MQ=255)
                                                                                                            tCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGca                                       >  2:1856198/1‑148 (MQ=255)
                                                                                                             ccTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGcac                                      >  2:3363241/1‑148 (MQ=255)
                                                                                                             ccTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGAGTTATAGTGCCTTCAACACGAAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGcac                                      >  2:1465834/1‑148 (MQ=255)
                                                                                                               ttATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGcacca                                    >  2:2702304/1‑148 (MQ=255)
                                                                                                               ttATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGcacca                                    >  1:2683663/1‑148 (MQ=255)
                                                                                                               ttATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGcacca                                    <  2:200641/148‑1 (MQ=255)
                                                                                                                    gTTTTATTTAGACATCTAAACGTCTTGATAGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTAtt                               <  1:1908313/148‑1 (MQ=255)
                                                                                                                     ttttATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTAttt                              >  2:968306/1‑148 (MQ=255)
                                                                                                                     ttttAGTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTAttt                              <  2:2548512/148‑1 (MQ=255)
                                                                                                                      tttatttaGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTAtttt                             >  1:901117/1‑148 (MQ=255)
                                                                                                                      tttatttaGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTAAAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTAtttt                             <  1:1097712/148‑1 (MQ=255)
                                                                                                                      tttatttaGACATCTAAACGTCTTGATAGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTAtttt                             >  2:2318325/1‑148 (MQ=255)
                                                                                                                      ttaatttaGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTAtttt                             <  2:2260639/145‑1 (MQ=255)
                                                                                                                        tatttaGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCa                           <  2:211587/148‑1 (MQ=255)
                                                                                                                           ttaGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCAccc                        >  2:2857814/1‑148 (MQ=255)
                                                                                                                           ttaGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCAccc                        >  2:3197749/1‑148 (MQ=255)
                                                                                                                            taGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCa                       >  1:1037605/1‑148 (MQ=255)
                                                                                                                             aGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAg                      <  2:2821624/148‑1 (MQ=255)
                                                                                                                                   cTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAgc                >  2:1748184/1‑148 (MQ=255)
                                                                                                                                   cTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAgc                <  1:1489936/148‑1 (MQ=255)
                                                                                                                                   cTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTAGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAgc                >  2:3611445/1‑148 (MQ=255)
                                                                                                                                     aaaCGTCTTGATAGCCAAATACTAGCATCGTGTTATAGTGCCAACAACACGCAACAACGTCAGGTACAAAAAAAATGACAAATAACCCTCAGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACACAGATGAgctc              >  1:324086/1‑146 (MQ=255)
                                                                                                                                      aaCGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAgcgcg             >  1:124876/1‑148 (MQ=255)
                                                                                                                                       aCGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAgcgcgc            >  1:1529169/1‑148 (MQ=255)
                                                                                                                                        cGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCt           >  1:2394994/1‑148 (MQ=255)
                                                                                                                                          tCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTgg         >  2:3345620/1‑148 (MQ=255)
                                                                                                                                          tCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTgg         >  2:2942059/1‑148 (MQ=255)
                                                                                                                                           cTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGgc        >  2:1403230/1‑148 (MQ=255)
                                                                                                                                           cTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATAACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGgc        >  2:624826/1‑148 (MQ=255)
                                                                                                                                             tGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGgcgc      >  2:2570812/1‑148 (MQ=255)
                                                                                                                                               aTTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCgcag    >  1:2573253/1‑148 (MQ=255)
                                                                                                                                                 tGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCgcagca  <  2:770992/148‑1 (MQ=255)
                                                                                                                                                 tGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCgcagca  <  1:1032325/148‑1 (MQ=255)
                                                                                                                                                 tGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCgcagca  <  1:1018332/148‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
TTGTTCATCAGTGAAAAAATCGTGCAGGTGATTGAAACTTCCTGGATGTGAAAAGTAGTTAGCCGGGCCGACGACCACGCGGATAGGATTGTGAGGCATGTTGTGTTGTCCTTATTGTTTTATTTAGACATCTAAACGTCTTGATTGCCAAATACTAGCATCGTGTTATAGTGCCTTCAACACGCAACTTCGTCAGGTACAATAAAAATGACAAATAACCCTCTGATTCCACAAAGCAAACTTCCACAACTTGGCACCACTATTTTCACCCAGATGAGCGCGCTGGCGCAGCA  >  CP009273/628835‑629127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A