Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F55 I0 R1 519 344.2 11360120 95.0% 10792114 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,556,774 G→A 14.1% intergenic (+298/‑177) yffP → / → yffQ CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,556,7740GA14.1% 1062.1 / 126.3 363intergenic (+298/‑177)yffP/yffQCPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (139/172);  new base A (31/20);  total (171/192)
Fisher's exact test for biased strand distribution p-value = 3.51e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 363 total aligned reads displayed.

CCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTT  >  CP009273/2556627‑2556922
                                                                                                                                                    |                                                                                                                                                     
 cTACCCGGGCCTTTCTCACAATCCCCTCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTg                                                                                                                                                    <  2:2402087/150‑1 (MQ=255)
 cTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTg                                                                                                                                                    <  1:3421609/150‑1 (MQ=255)
  tACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGa                                                                                                                                                   >  2:4200616/1‑150 (MQ=255)
    cccGGGCCTTTCTCACAAGCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAt                                                                                                                                                 <  2:2646088/150‑1 (MQ=255)
      cGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAttt                                                                                                                                               <  1:4548251/150‑1 (MQ=255)
       gggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAtttt                                                                                                                                              <  1:2185394/150‑1 (MQ=255)
       gggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAtttt                                                                                                                                              <  1:2102166/150‑1 (MQ=255)
         gCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgt                                                                                                                                            <  1:4327970/150‑1 (MQ=255)
         gCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgt                                                                                                                                            >  2:952136/1‑150 (MQ=255)
          ccTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgtg                                                                                                                                           >  1:1838605/1‑150 (MQ=255)
          ccTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgtg                                                                                                                                           <  2:1408721/150‑1 (MQ=255)
          ccTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgtg                                                                                                                                           <  2:4866448/150‑1 (MQ=255)
            tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGAt                                                                                                                                         <  2:5377561/150‑1 (MQ=255)
            tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGAt                                                                                                                                         <  2:3241712/150‑1 (MQ=255)
            tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGAt                                                                                                                                         <  2:711264/150‑1 (MQ=255)
                tcccaAGCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACACTTGATTAATTTCTGAACATTCAAATCAACTCCCC‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAg                                                                                                                                     <  2:4552215/147‑1 (MQ=255)
                  acaATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGAt                                                                                                                                   >  2:1156554/1‑150 (MQ=255)
                   caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATc                                                                                                                                  <  2:5271467/150‑1 (MQ=255)
                   caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATc                                                                                                                                  >  2:4133263/1‑150 (MQ=255)
                   caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATc                                                                                                                                  <  1:817646/150‑1 (MQ=255)
                   caATCCCCGCGGACATTATATCACCCATCTGTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGAt                                                                                                                                   <  2:4281739/150‑1 (MQ=255)
                          cGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCttttt                                                                                                                           >  1:4272313/1‑150 (MQ=255)
                           gCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTc                                                                                                                          <  1:102972/150‑1 (MQ=255)
                           gCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTc                                                                                                                          >  1:2929087/1‑150 (MQ=255)
                               aCATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCtt                                                                                                                      >  1:1696292/1‑150 (MQ=255)
                                cATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTc                                                                                                                     <  2:2504872/150‑1 (MQ=255)
                                cATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTc                                                                                                                     >  1:3919261/1‑150 (MQ=255)
                                 aTTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCa                                                                                                                    >  1:3017034/1‑150 (MQ=255)
                                  ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAg                                                                                                                   <  2:492811/150‑1 (MQ=255)
                                  ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAg                                                                                                                   >  1:3053448/1‑150 (MQ=255)
                                     tatCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCa                                                                                                                <  1:4797570/150‑1 (MQ=255)
                                        cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttt                                                                                                             <  1:4041231/150‑1 (MQ=255)
                                        cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttt                                                                                                             <  1:1882076/150‑1 (MQ=255)
                                        cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttt                                                                                                             >  1:1454092/1‑150 (MQ=255)
                                         aCCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAtttt                                                                                                            <  2:1868778/150‑1 (MQ=255)
                                           ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTg                                                                                                          >  1:2619415/1‑150 (MQ=255)
                                           ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTg                                                                                                          <  2:1727042/150‑1 (MQ=255)
                                             aTCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGtt                                                                                                        >  1:1184278/1‑150 (MQ=255)
                                             aTCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGtt                                                                                                        >  1:4024622/1‑150 (MQ=255)
                                              tCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAAGTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGttt                                                                                                       >  2:2992835/1‑150 (MQ=255)
                                                tttCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTaa                                                                                                     <  1:5301919/150‑1 (MQ=255)
                                                 ttCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAAt                                                                                                    >  2:561794/1‑150 (MQ=255)
                                                     gTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa                                                                                                <  1:2797782/150‑1 (MQ=255)
                                                     gTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa                                                                                                >  2:2857904/1‑150 (MQ=255)
                                                      ttttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaat                                                                                               <  2:819851/150‑1 (MQ=255)
                                                       tttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaatc                                                                                              >  1:3159399/1‑150 (MQ=255)
                                                        ttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaatca                                                                                             >  1:568670/1‑150 (MQ=255)
                                                          cAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAAc                                                                                           <  1:1402527/150‑1 (MQ=255)
                                                           aGGTGGGAGACTGATGGCCGCCGACGTTGCACCATTGATTAAGTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTGTTGTTTAATTCAATCAACg                                                                                          >  2:3989291/1‑150 (MQ=255)
                                                             gTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaa                                                                                        >  2:2722472/1‑150 (MQ=255)
                                                              tGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaaa                                                                                       >  1:4634868/1‑150 (MQ=255)
                                                              tGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaaa                                                                                       <  1:2403878/150‑1 (MQ=255)
                                                               gggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAg                                                                                      <  1:639388/150‑1 (MQ=255)
                                                                  agaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCa                                                                                   <  2:4408370/150‑1 (MQ=255)
                                                                  agaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCa                                                                                   >  2:184788/1‑150 (MQ=255)
                                                                    aCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGt                                                                                 >  2:2339152/1‑150 (MQ=255)
                                                                      tGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTc                                                                               >  2:3627359/1‑150 (MQ=255)
                                                                        aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTccc                                                                             <  2:261508/150‑1 (MQ=255)
                                                                        aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTccc                                                                             >  2:1328319/1‑150 (MQ=255)
                                                                         tGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCca                                                                            >  2:301198/1‑150 (MQ=255)
                                                                         tGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCca                                                                            <  1:1681617/150‑1 (MQ=255)
                                                                           gccgccGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaac                                                                          <  1:688527/150‑1 (MQ=255)
                                                                            ccgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaaca                                                                         <  1:578148/150‑1 (MQ=255)
                                                                             cgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaa                                                                        >  2:2947155/1‑150 (MQ=255)
                                                                             cgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaa                                                                        >  1:3714854/1‑150 (MQ=255)
                                                                               ccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaaca                                                                      <  1:3359100/150‑1 (MQ=255)
                                                                                 gACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa                                                                    <  1:5504788/150‑1 (MQ=255)
                                                                                  aCGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaaa                                                                   >  1:4880059/1‑150 (MQ=255)
                                                                                   cGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAAt                                                                  <  2:1970943/150‑1 (MQ=255)
                                                                                    gTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGGTCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATa                                                                 >  2:2484866/1‑150 (MQ=255)
                                                                                      tGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaaa                                                               >  2:3322922/1‑150 (MQ=255)
                                                                                       tcaccATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAg                                                              <  2:1570639/149‑1 (MQ=255)
                                                                                        cacaATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGa                                                             <  2:5671938/150‑1 (MQ=255)
                                                                                         acaATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGAt                                                            >  1:3611838/1‑150 (MQ=255)
                                                                                           aaTTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg                                                          >  2:1018413/1‑150 (MQ=255)
                                                                                            aTTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATggg                                                         <  2:3919261/150‑1 (MQ=255)
                                                                                             ttGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGa                                                        >  2:5117576/1‑150 (MQ=255)
                                                                                              tGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAg                                                       <  2:1149475/150‑1 (MQ=255)
                                                                                                aTTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGt                                                     >  1:4786750/1‑150 (MQ=255)
                                                                                                 ttAATTTCTGAGCATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTa                                                    <  2:1438098/150‑1 (MQ=255)
                                                                                                   aaTTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaa                                                  >  2:890246/1‑150 (MQ=255)
                                                                                                    aTTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaa                                                 >  2:5227263/1‑150 (MQ=255)
                                                                                                    aTTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaa                                                 >  1:4679855/1‑150 (MQ=255)
                                                                                                         tGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑aa                                           >  1:50531/1‑150 (MQ=255)
                                                                                                         agAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑aa                                           <  2:3443606/149‑1 (MQ=255)
                                                                                                            aCATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACg                                        >  1:3754165/1‑150 (MQ=255)
                                                                                                               ttCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTg                                     <  1:1966787/150‑1 (MQ=255)
                                                                                                                tCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTgg                                    <  2:2558913/150‑1 (MQ=255)
                                                                                                                  aaaTCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGa                                  <  1:3434134/150‑1 (MQ=255)
                                                                                                                         cTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCACTTCAGGCATTTTTGTTTAATTAAATCAACGAAAGGCAGTTCACAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGAGGGAAGttcct                           >  1:2767996/1‑146 (MQ=255)
                                                                                                                            cca‑ccaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTa                        <  1:50205/150‑1 (MQ=255)
                                                                                                                              a‑ccaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGATTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACt                      <  2:2904307/150‑1 (MQ=255)
                                                                                                                                 caAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTgg                    >  2:3824973/1‑150 (MQ=255)
                                                                                                                                 caAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTgg                    >  1:5609365/1‑150 (MQ=255)
                                                                                                                                  aaaGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGt                   <  2:4735238/150‑1 (MQ=255)
                                                                                                                                  aaaGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGt                   <  2:3532076/150‑1 (MQ=255)
                                                                                                                                      ccAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATg               <  1:326973/150‑1 (MQ=255)
                                                                                                                                           aaGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAAt          >  2:4498209/1‑150 (MQ=255)
                                                                                                                                                  gAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt    >  2:4687420/1‑150 (MQ=255)
                                                                                                                                                   aGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAAGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGttt  <  2:1263910/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
CCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTT  >  CP009273/2556627‑2556922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A