Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,545,086 C→A 42.6% D138Y (GAT→TAT)  ypeA ← putative acyl‑CoA transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,545,0860CA42.6% 228.4 / 283.7 230D138Y (GAT→TAT) ypeAputative acyl‑CoA transferase
Reads supporting (aligned to +/- strand):  ref base C (61/71);  new base A (43/55);  total (104/126)
Fisher's exact test for biased strand distribution p-value = 7.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

Only 100 of 245 total aligned reads displayed.

AGCGCAGTACCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTCCAGCCGATT  >  CP009273/2544937‑2545233
                                                                                                                                                     |                                                                                                                                                   
  cgcAGTACCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACtcttcatctt                                                                                                                                                   >  1:209627/1‑150 (MQ=255)
   gcAGTACCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACtcttcatcttc                                                                                                                                                  <  2:2577106/150‑1 (MQ=255)
     aGTACCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTtcaa                                                                                                                                                >  2:2085072/1‑150 (MQ=255)
      gTACCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTtcaat                                                                                                                                               >  1:641083/1‑150 (MQ=255)
      gTACCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATtcaat                                                                                                                                               >  1:1023432/1‑150 (MQ=255)
        aCCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTtcaatca                                                                                                                                             >  2:2396568/1‑150 (MQ=255)
        aCCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATtcaatca                                                                                                                                             <  2:3911390/150‑1 (MQ=255)
           cTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAAc                                                                                                                                          >  2:49828/1‑150 (MQ=255)
           cTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAAc                                                                                                                                          <  2:235414/150‑1 (MQ=255)
            tGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACg                                                                                                                                         <  1:1660264/150‑1 (MQ=255)
             gCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGc                                                                                                                                        <  2:1783014/150‑1 (MQ=255)
               tCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCtt                                                                                                                                      <  1:2252794/150‑1 (MQ=255)
                   gcgACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCTGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTAccc                                                                                                                                  <  2:3690689/150‑1 (MQ=255)
                    cgACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCa                                                                                                                                 <  2:2491951/150‑1 (MQ=255)
                     gACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAg                                                                                                                                <  1:2366113/150‑1 (MQ=255)
                     gACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAg                                                                                                                                <  1:284247/150‑1 (MQ=255)
                       cGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGAc                                                                                                                              <  2:3280249/150‑1 (MQ=255)
                       cGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGAc                                                                                                                              <  1:2071752/150‑1 (MQ=255)
                         cACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTc                                                                                                                            >  2:3545867/1‑150 (MQ=255)
                          aCCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCa                                                                                                                           <  2:725934/150‑1 (MQ=255)
                          aCCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCa                                                                                                                           >  1:1892040/1‑150 (MQ=255)
                           ccgtaaaTGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGTTAAACGCAGTCGACAGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATAAAACGCTTACCCAGACTCAg                                                                                                                          <  2:2297818/145‑1 (MQ=255)
                           ccGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAg                                                                                                                          <  2:3034678/150‑1 (MQ=255)
                             ggCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCa                                                                                                                        >  1:3442711/1‑150 (MQ=255)
                             ggCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCa                                                                                                                        >  1:3442753/1‑150 (MQ=255)
                                aaTGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGt                                                                                                                     >  2:1500090/1‑150 (MQ=255)
                                    aCAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGc                                                                                                                 >  2:2694396/1‑150 (MQ=255)
                                     cAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCg                                                                                                                <  1:3538314/150‑1 (MQ=255)
                                     cAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCg                                                                                                                <  2:1395062/150‑1 (MQ=255)
                                         cAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGtt                                                                                                            <  1:3694650/150‑1 (MQ=255)
                                            cACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCat                                                                                                         >  2:1453447/1‑150 (MQ=255)
                                              cccAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCatat                                                                                                       <  1:3810463/150‑1 (MQ=255)
                                              cccAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCatat                                                                                                       <  2:567419/150‑1 (MQ=255)
                                                 aGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTTCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAATCGCTTACCCAGACTCAGCACGTCTGCGTGTTCATTTccc                                                                                                    >  1:2715584/1‑150 (MQ=255)
                                                  ggTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCa                                                                                                   <  1:1064433/150‑1 (MQ=255)
                                                    ttCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAgg                                                                                                 <  2:378146/150‑1 (MQ=255)
                                                    ttCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAgg                                                                                                 <  2:1992195/150‑1 (MQ=255)
                                                         gcCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACGCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTc                                                                                            >  1:3660352/1‑150 (MQ=255)
                                                             gAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATAc                                                                                        <  2:1348562/150‑1 (MQ=255)
                                                               aGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACAt                                                                                      <  2:185629/150‑1 (MQ=255)
                                                               aGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACAt                                                                                      >  2:477688/1‑150 (MQ=255)
                                                                gCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACAtt                                                                                     <  2:2399327/150‑1 (MQ=255)
                                                                 cAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTAATCTTCATCTACAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATAAATTc                                                                                    >  1:1947242/1‑150 (MQ=255)
                                                                   aTAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCg                                                                                  <  1:2863504/150‑1 (MQ=255)
                                                                     aGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAg                                                                                <  2:4005661/150‑1 (MQ=255)
                                                                     aGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAg                                                                                >  1:3251296/1‑150 (MQ=255)
                                                                         caAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCAcc                                                                            >  2:105046/1‑150 (MQ=255)
                                                                          aaGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCa                                                                           >  1:792087/1‑150 (MQ=255)
                                                                           aGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCAt                                                                          <  1:4065745/150‑1 (MQ=255)
                                                                              cAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTc                                                                       <  2:1617618/150‑1 (MQ=255)
                                                                              cAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTc                                                                       <  1:1234762/150‑1 (MQ=255)
                                                                               agaagaGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCg                                                                      >  2:2160390/1‑150 (MQ=255)
                                                                                 aagaGCAAGGGTAAACGCAGGCGACCGTGCTCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATAAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGtt                                                                    >  1:2569727/1‑150 (MQ=255)
                                                                                 aagaGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGtt                                                                    <  1:889912/150‑1 (MQ=255)
                                                                                 aagaGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCTCGTAGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGtt                                                                    <  2:642884/150‑1 (MQ=255)
                                                                                 aagaGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGtt                                                                    >  1:2569576/1‑150 (MQ=255)
                                                                                   gagCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTAt                                                                  <  2:2784181/150‑1 (MQ=255)
                                                                                      cAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCtt                                                               <  1:2602522/150‑1 (MQ=255)
                                                                                       aaGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTc                                                              >  1:4077268/1‑150 (MQ=255)
                                                                                        aGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTcc                                                             <  2:941217/150‑1 (MQ=255)
                                                                                         gggTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCg                                                            >  1:1441498/1‑150 (MQ=255)
                                                                                         gggTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCg                                                            <  2:37955/150‑1 (MQ=255)
                                                                                             aaaCGCAGGCGACCGTGCTCATCATAATTGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGcac                                                        <  2:4118588/150‑1 (MQ=255)
                                                                                                cGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACAtt                                                     <  2:82846/150‑1 (MQ=255)
                                                                                                 gCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTg                                                    >  1:1562265/1‑150 (MQ=255)
                                                                                                 gCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTg                                                    <  1:1336648/150‑1 (MQ=255)
                                                                                                  cAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGa                                                   >  2:1195853/1‑150 (MQ=255)
                                                                                                   aGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGAt                                                  <  2:2893100/150‑1 (MQ=255)
                                                                                                       gACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGa                                              <  1:279041/150‑1 (MQ=255)
                                                                                                        aCCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGaa                                             >  2:3454095/1‑150 (MQ=255)
                                                                                                          cGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAAtt                                           >  1:3964614/1‑150 (MQ=255)
                                                                                                            tGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAAtttt                                         <  1:541014/150‑1 (MQ=255)
                                                                                                             gcgcATCATAATGGACAGGATGAAACTCAGTTCTCTTCATATTCAATCATACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACAGTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTc                                        <  2:3214886/150‑1 (MQ=255)
                                                                                                             gcgcATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTc                                        <  2:845598/150‑1 (MQ=255)
                                                                                                             gcgcATCATAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTc                                        <  2:2987207/150‑1 (MQ=255)
                                                                                                              cgcATCATAATGGACAGGTTGAAACTCAGTACTCTTCATCTTCAATCCAACGCTTACCCAGCCTCAGCACGTCGGCGTGTTCAGATCCCACGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCTCATTGATCTGAATTTTCg                                       <  1:3940270/150‑1 (MQ=255)
                                                                                                              cgcATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCg                                       >  2:204627/1‑150 (MQ=255)
                                                                                                               gcATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCgg                                      <  2:3593712/150‑1 (MQ=255)
                                                                                                                 atcatAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGc                                    >  1:3964369/1‑150 (MQ=255)
                                                                                                                 atcatAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGc                                    >  1:1971257/1‑150 (MQ=255)
                                                                                                                   catAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAg                                  >  1:3229822/1‑150 (MQ=255)
                                                                                                                     tAATGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGcc                                >  2:670328/1‑150 (MQ=255)
                                                                                                                      aaTGGACAGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCa                               >  1:2328130/1‑150 (MQ=255)
                                                                                                                         ggACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGa                            <  1:2119245/150‑1 (MQ=255)
                                                                                                                            cAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGATCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCa                         >  1:3021699/1‑150 (MQ=255)
                                                                                                                             aGGATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCaa                        <  1:3520222/150‑1 (MQ=255)
                                                                                                                               gATGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATc                      <  1:497902/150‑1 (MQ=255)
                                                                                                                                 tGAAACTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAg                    >  1:3872086/1‑150 (MQ=255)
                                                                                                                                   aaaCTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCt                  >  2:1261732/1‑150 (MQ=255)
                                                                                                                                    aaCTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCtt                 <  2:3509352/150‑1 (MQ=255)
                                                                                                                                    aaCTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCtt                 <  1:851320/150‑1 (MQ=255)
                                                                                                                                      cTCAGTACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCtttt               >  1:2477716/1‑150 (MQ=255)
                                                                                                                                       tCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCttttt              >  1:3365949/1‑150 (MQ=255)
                                                                                                                                        cAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTtc             >  1:3105081/1‑150 (MQ=255)
                                                                                                                                           tACTCTTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTcc          >  1:3378512/1‑150 (MQ=255)
                                                                                                                                            aCTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTCCa         >  2:395491/1‑150 (MQ=255)
                                                                                                                                             ctctTCATATTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTCCAg        >  2:1047388/1‑150 (MQ=255)
                                                                                                                                               cttcatattcaATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTCCAGcc      <  1:4051945/150‑1 (MQ=255)
                                                                                                                                                ttcatcttcaATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTCCAGCCg     <  1:3374746/150‑1 (MQ=255)
                                                                                                                                                  catcttcaATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTCCAGCCGAt   >  1:154640/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
AGCGCAGTACCCTGCTCGCGCGACGCACCGGCAATGACAAACAGCACCCAGGTTCGCGCCTGAAGCAATAGCACAAGCCAGAAGAGCAAGGGTAAACGCAGGCGACCGTGCGCATCATAATGGACAGGATGAAACTCAGTACTCTTCATCTTCAATCAAACGCTTACCCAGACTCAGCACGTCGGCGTGTTCATATCCCAGGCGTTCATACATTCCGAGCACCATGTCGTTATCTTCCGGCACATTGATCTGAATTTTCGGGCAGCCACGAGCAATCAGCTTTTTCTCCAGCCGATT  >  CP009273/2544937‑2545233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A