Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,987,928 C→A 5.8% pseudogene (524/633 nt) ygeK ← pseudogene; putative 2‑component transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,987,9280CA 5.8% 903.6 / 21.4 233pseudogene (524/633 nt)ygeKpseudogene; putative 2‑component transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (93/126);  new base A (3/11);  total (96/137)
Fisher's exact test for biased strand distribution p-value = 1.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01

Only 100 of 233 total aligned reads displayed.

CGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTATCAAAATAA  >  CP009273/2987780‑2988074
                                                                                                                                                    |                                                                                                                                                  
 gTAAGGCTTCAGCAAAATGAGCCTAAATCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCtt                                                                                                                                                  <  1:1223220/150‑1 (MQ=255)
 gTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCtt                                                                                                                                                  <  1:907990/150‑1 (MQ=255)
    aGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAAc                                                                                                                                               >  1:1063806/1‑150 (MQ=255)
     ggCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACt                                                                                                                                              <  2:1940799/150‑1 (MQ=255)
              aaaaTGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAAt                                                                                                                                     <  1:2993067/150‑1 (MQ=255)
               aaaTGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAAtt                                                                                                                                    <  2:3911167/150‑1 (MQ=255)
                aaTGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTa                                                                                                                                   >  2:279083/1‑150 (MQ=255)
                aaTGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTa                                                                                                                                   >  1:710170/1‑150 (MQ=255)
                aaTGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTa                                                                                                                                   <  2:700266/150‑1 (MQ=255)
                 aTGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAg                                                                                                                                  <  1:3978852/150‑1 (MQ=255)
                   gAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCg                                                                                                                                <  2:81231/150‑1 (MQ=255)
                    aGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGa                                                                                                                               >  2:2906348/1‑150 (MQ=255)
                     gCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGAt                                                                                                                              <  2:1043688/150‑1 (MQ=255)
                      ccTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGACCATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGAtt                                                                                                                             <  1:2113917/150‑1 (MQ=255)
                      ccTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGAtt                                                                                                                             >  1:3133747/1‑150 (MQ=255)
                       cataacccTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGATTAACTGCAAGAAATTAGCGAttt                                                                                                                            <  2:4017911/144‑1 (MQ=255)
                       cTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACGGTGAACCTCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGAttt                                                                                                                            >  1:1482925/1‑150 (MQ=255)
                           aGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCttt                                                                                                                        >  1:1587140/1‑150 (MQ=255)
                              ctctTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCtttgtt                                                                                                                     <  2:3734086/150‑1 (MQ=255)
                              ctctTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCtttgtt                                                                                                                     <  1:1691203/150‑1 (MQ=255)
                                ctTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCtttgtttg                                                                                                                   <  1:3068028/150‑1 (MQ=255)
                                 ttttttttATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTttgtttgt                                                                                                                  <  2:1202148/150‑1 (MQ=255)
                                  tttttttATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTtgtttgtt                                                                                                                 <  2:2839512/150‑1 (MQ=255)
                                  tttttttATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTtgtttgtt                                                                                                                 <  2:777032/150‑1 (MQ=255)
                                   ttttttATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTgtttgttt                                                                                                                <  2:2476176/150‑1 (MQ=255)
                                    tttttATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGtttt                                                                                                               <  2:243510/150‑1 (MQ=255)
                                    tttttATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGtttt                                                                                                               <  1:2641997/150‑1 (MQ=255)
                                         atataGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCAt                                                                                                          >  2:3882151/1‑150 (MQ=255)
                                         atataGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCAt                                                                                                          >  1:2441315/1‑150 (MQ=255)
                                          tataGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGATTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATc                                                                                                         <  2:2010249/150‑1 (MQ=255)
                                                gCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTAt                                                                                                   >  2:1478188/1‑150 (MQ=255)
                                                gCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTAt                                                                                                   >  1:417991/1‑150 (MQ=255)
                                                 cAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATg                                                                                                  <  2:2726381/150‑1 (MQ=255)
                                                 cAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATg                                                                                                  >  1:3898974/1‑150 (MQ=255)
                                                    acacCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCACGAAATTAGCGATTTCTGTGTTTGTTTTACCATCAGCTATGAGt                                                                                               >  2:1949109/1‑150 (MQ=255)
                                                     cacCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGtt                                                                                              >  1:2154352/1‑150 (MQ=255)
                                                     cacCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGtt                                                                                              >  2:2828749/1‑150 (MQ=255)
                                                       cccATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGt                                                                                            >  2:3810270/1‑150 (MQ=255)
                                                        ccATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTa                                                                                           <  1:2014227/150‑1 (MQ=255)
                                                           tACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAata                                                                                        <  2:932985/150‑1 (MQ=255)
                                                             cGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATAtt                                                                                      >  1:1233606/1‑150 (MQ=255)
                                                              gTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGATTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATAttt                                                                                     <  1:1011569/150‑1 (MQ=255)
                                                                aaaGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCt                                                                                   >  1:1665261/1‑150 (MQ=255)
                                                                 aaGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTg                                                                                  <  1:4020598/150‑1 (MQ=255)
                                                                     tGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTc                                                                              >  1:3347329/1‑150 (MQ=255)
                                                                     tGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTc                                                                              <  2:521446/150‑1 (MQ=255)
                                                                     tGTTTTGATCAACTCGAGACCTCTGTGAACAACTATTTTCTTCATGATATTGATTCTATGTGTTTCGACTGTTTTCCTGCTTAACTGCTAGAAATTTGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTc                                                                              <  2:1285790/150‑1 (MQ=255)
                                                                          tGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGAt                                                                         <  2:2943115/150‑1 (MQ=255)
                                                                          agATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGAt                                                                         <  2:588680/149‑1 (MQ=255)
                                                                            aTCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGAttt                                                                       >  2:4117852/1‑150 (MQ=255)
                                                                                aCTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTaa                                                                   >  2:4080984/1‑150 (MQ=255)
                                                                                     aTACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGa                                                              <  2:423989/150‑1 (MQ=255)
                                                                                      tACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGAt                                                             <  1:3744548/150‑1 (MQ=255)
                                                                                      tACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGAt                                                             <  2:3103805/150‑1 (MQ=255)
                                                                                       aCCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGAtt                                                            <  1:1801124/150‑1 (MQ=255)
                                                                                       aCCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGAtt                                                            >  1:1209897/1‑150 (MQ=255)
                                                                                        ccACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTa                                                           >  2:2040830/1‑150 (MQ=255)
                                                                                        ccACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTa                                                           <  2:1120501/150‑1 (MQ=255)
                                                                                         cACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTAt                                                          >  2:27565/1‑150 (MQ=255)
                                                                                         cACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGATTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTAt                                                          <  2:3403109/150‑1 (MQ=255)
                                                                                           cTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCa                                                        <  1:4169600/150‑1 (MQ=255)
                                                                                           cTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCa                                                        >  1:853140/1‑150 (MQ=255)
                                                                                             gtgAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCaga                                                      >  1:1787322/1‑150 (MQ=255)
                                                                                               gAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAgg                                                    <  1:2306462/150‑1 (MQ=255)
                                                                                               gAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAgg                                                    <  1:279083/150‑1 (MQ=255)
                                                                                               gAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGATTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAgg                                                    >  1:349810/1‑150 (MQ=255)
                                                                                                  cATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAAt                                                 >  1:2793553/1‑150 (MQ=255)
                                                                                                   aTCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATa                                                <  2:440459/150‑1 (MQ=255)
                                                                                                   aTCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGATTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATa                                                >  1:3787115/1‑150 (MQ=255)
                                                                                                     cTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATAcc                                              <  1:642064/150‑1 (MQ=255)
                                                                                                     cTAATGTATTCTTGATATTGAGTCTATGAGTTTCGTCTGTTTTACTGCTTAACTTCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTATGACTCACGATTTGTAAGTTGATTATCAGAGGAATAcc                                              <  1:1487548/150‑1 (MQ=255)
                                                                                                        aTTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTgg                                           <  2:1165737/150‑1 (MQ=255)
                                                                                                         tttCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTTCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATTAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATAACTgta                                          >  2:1108167/1‑148 (MQ=255)
                                                                                                          ttcttcATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGaa                                         <  2:3456219/150‑1 (MQ=255)
                                                                                                             ttcATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGat                                      <  2:2533378/150‑1 (MQ=255)
                                                                                                               cATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGatat                                    >  2:2235733/1‑150 (MQ=255)
                                                                                                                  gATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATAtttt                                 >  2:3490266/1‑150 (MQ=255)
                                                                                                                   atatTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATAttttt                                <  1:3683878/150‑1 (MQ=255)
                                                                                                                     atTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTc                              >  1:2981421/1‑150 (MQ=255)
                                                                                                                       tGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTcac                            >  2:1619385/1‑150 (MQ=255)
                                                                                                                          gTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAAt                         >  2:2850885/1‑150 (MQ=255)
                                                                                                                           tCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATc                        >  2:301320/1‑150 (MQ=255)
                                                                                                                             tATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCa                      <  1:1116260/150‑1 (MQ=255)
                                                                                                                             tATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCa                      <  2:2441315/150‑1 (MQ=255)
                                                                                                                             tATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCa                      <  2:2559478/150‑1 (MQ=255)
                                                                                                                              aTGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCat                     >  1:2185577/1‑150 (MQ=255)
                                                                                                                              aTGAGTTTCGACTGTTTTCCTGCTTAACTGAAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCat                     <  1:1838025/150‑1 (MQ=255)
                                                                                                                               tGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCata                    <  2:3737090/150‑1 (MQ=255)
                                                                                                                                 aGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATg                  >  1:2359037/1‑150 (MQ=255)
                                                                                                                                    ttCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTac               <  1:1501527/150‑1 (MQ=255)
                                                                                                                                      cGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTacac             >  1:1403474/1‑150 (MQ=255)
                                                                                                                                        aCTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTa           <  2:1432782/150‑1 (MQ=255)
                                                                                                                                        aCTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTa           <  2:3666275/150‑1 (MQ=255)
                                                                                                                                          tGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTATc         >  1:2430070/1‑150 (MQ=255)
                                                                                                                                             tttCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTTCACTATCaaa      >  2:3927368/1‑150 (MQ=255)
                                                                                                                                             tttCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTTCACTATCaaa      >  2:1405933/1‑150 (MQ=255)
                                                                                                                                               tCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTATCAAAAt    <  2:1850121/150‑1 (MQ=255)
                                                                                                                                               tCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTATCAAAAt    <  1:1797484/150‑1 (MQ=255)
                                                                                                                                               tCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTATCAAAAt    <  2:1564816/150‑1 (MQ=255)
                                                                                                                                                 cTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTATCAAAATaa  >  1:4107744/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
CGTAAGGCTTCAGCAAAATGAGCCTAAAGCCTCTTTTTTTTATATAGTGCAAACACCCATACGTAAAGCTGTTTTGATCAACTCGATACCACTGTGAACATCTAATTTCTTCATGATATTGAGTCTATGAGTTTCGACTGTTTTCCTGCTTAACTGCAAGAAATTAGCGATTTCTTTGTTTGTTTTACCATCAGCTATGAGTTGTAATATTTCTGACTCACGATTTGTAAGTTGATTATCAGAGGAATACCTGGAAGATATTTTTTCACAATCCATATGTACACTATCAAAATAA  >  CP009273/2987780‑2988074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A