Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,036,052 C→A 47.0% S152S (TCG→TCT)  yqfA ← hemolysin III family HylIII inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,036,0520CA47.0% 150.4 / inf 238S152S (TCG→TCT) yqfAhemolysin III family HylIII inner membrane protein
Reads supporting (aligned to +/- strand):  ref base C (50/76);  new base A (58/54);  total (108/130)
Fisher's exact test for biased strand distribution p-value = 6.86e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 241 total aligned reads displayed.

AGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATCCAGCCCCACCAGCA  >  CP009273/3035903‑3036200
                                                                                                                                                     |                                                                                                                                                    
aGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGc                                                                                                                                                      >  1:605798/1‑150 (MQ=255)
  cACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGa                                                                                                                                                    <  1:2214976/150‑1 (MQ=255)
     gAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGAcag                                                                                                                                                 <  1:2515457/150‑1 (MQ=255)
     gAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCAACAGAGAcag                                                                                                                                                 >  1:83915/1‑150 (MQ=255)
      aaGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATACATTACCACCAGCGAcagc                                                                                                                                                >  2:2260163/1‑150 (MQ=255)
      aaGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGAcagc                                                                                                                                                >  2:2681505/1‑150 (MQ=255)
      aaGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGAcagc                                                                                                                                                >  2:649534/1‑150 (MQ=255)
      aaGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGAcagc                                                                                                                                                <  1:1867516/150‑1 (MQ=255)
        gCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGAcagcca                                                                                                                                              <  1:3015813/150‑1 (MQ=255)
              ccAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCAt                                                                                                                                        >  2:2726650/1‑150 (MQ=255)
              ccAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCAt                                                                                                                                        >  2:3599106/1‑150 (MQ=255)
               cAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATc                                                                                                                                       <  2:924655/150‑1 (MQ=255)
                aGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCg                                                                                                                                      <  1:351596/150‑1 (MQ=255)
                   tGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCa                                                                                                                                   <  1:3249961/150‑1 (MQ=255)
                   tGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCa                                                                                                                                   <  1:1953915/150‑1 (MQ=255)
                       aTGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATa                                                                                                                               <  2:3234485/150‑1 (MQ=255)
                       aTGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATa                                                                                                                               <  2:930861/150‑1 (MQ=255)
                        tGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAg                                                                                                                              <  1:2750396/150‑1 (MQ=255)
                            tGTATTGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCa                                                                                                                          >  1:304960/1‑150 (MQ=255)
                               aTGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCa                                                                                                                       >  2:23722/1‑150 (MQ=255)
                                tGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCag                                                                                                                      <  1:637208/150‑1 (MQ=255)
                                tGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCag                                                                                                                      >  2:3299711/1‑150 (MQ=255)
                                 ggAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCaga                                                                                                                     >  1:2653989/1‑150 (MQ=255)
                                   aaTGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAgaga                                                                                                                   <  1:884100/150‑1 (MQ=255)
                                    aTGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGAt                                                                                                                  >  2:2953197/1‑150 (MQ=255)
                                        gTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCGGCCCATCGCCAGATAGGTCACCAGAGATaaaa                                                                                                              >  1:3566729/1‑150 (MQ=255)
                                        gTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATaaaa                                                                                                              >  1:3566544/1‑150 (MQ=255)
                                          ttGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAAtt                                                                                                            <  2:3681662/150‑1 (MQ=255)
                                            gCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAAtttt                                                                                                          <  1:3222685/150‑1 (MQ=255)
                                              aGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGa                                                                                                        >  2:1902045/1‑150 (MQ=255)
                                               gACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGaa                                                                                                       <  1:1811688/150‑1 (MQ=255)
                                                 cGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATc                                                                                                     >  2:1351726/1‑150 (MQ=255)
                                                 cGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATc                                                                                                     <  1:1662076/150‑1 (MQ=255)
                                                  gTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCg                                                                                                    >  1:3292828/1‑150 (MQ=255)
                                                   tAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCgg                                                                                                   <  2:1435490/150‑1 (MQ=255)
                                                    aGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGt                                                                                                  <  1:2381007/150‑1 (MQ=255)
                                                    aGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGt                                                                                                  <  2:493782/150‑1 (MQ=255)
                                                     gAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTg                                                                                                 >  2:3363234/1‑150 (MQ=255)
                                                     gAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTg                                                                                                 <  2:2385934/150‑1 (MQ=255)
                                                      aaaaTCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTgc                                                                                                <  2:1333692/150‑1 (MQ=255)
                                                         aTCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGcgcg                                                                                             >  1:1884307/1‑150 (MQ=255)
                                                           cACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGAt                                                                                           <  2:3622078/150‑1 (MQ=255)
                                                             ccccGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAACTTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATgg                                                                                         <  2:2120537/150‑1 (MQ=255)
                                                             ccccGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATgg                                                                                         <  1:413599/150‑1 (MQ=255)
                                                               ccGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTc                                                                                       <  1:1437723/150‑1 (MQ=255)
                                                                cGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCa                                                                                      >  2:4092584/1‑150 (MQ=255)
                                                                cGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCa                                                                                      <  2:1019552/150‑1 (MQ=255)
                                                                cGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCa                                                                                      <  2:1678644/150‑1 (MQ=255)
                                                                  aGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGt                                                                                    >  2:454505/1‑150 (MQ=255)
                                                                  aGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATGTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGt                                                                                    >  2:399792/1‑150 (MQ=255)
                                                                    cGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGttt                                                                                  <  2:3532997/150‑1 (MQ=255)
                                                                      aaTAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTaa                                                                                <  2:1918506/150‑1 (MQ=255)
                                                                         aaaCCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACa                                                                             >  1:1163427/1‑150 (MQ=255)
                                                                         aaaCCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACa                                                                             <  1:1560412/150‑1 (MQ=255)
                                                                          aaCCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAg                                                                            >  2:1603080/1‑150 (MQ=255)
                                                                          aaCCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAg                                                                            >  2:2865950/1‑150 (MQ=255)
                                                                          aaCCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAg                                                                            >  1:3904871/1‑150 (MQ=255)
                                                                          aaCCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAg                                                                            >  1:2426984/1‑150 (MQ=255)
                                                                           aCCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGa                                                                           >  2:3262759/1‑150 (MQ=255)
                                                                             cACGCCGCCTACCGCCATTAAGGTAACGCTGCCAGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGacg                                                                         <  1:1242224/150‑3 (MQ=255)
                                                                               cgccgcCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATAc                                                                       <  1:1928223/150‑1 (MQ=255)
                                                                               cgccgcCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATAc                                                                       >  2:1504890/1‑150 (MQ=255)
                                                                                gccgccTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATAcc                                                                      >  2:1994358/1‑150 (MQ=255)
                                                                                gccgccTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATAcc                                                                      <  2:3156704/150‑1 (MQ=255)
                                                                                  cgccTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCa                                                                    >  2:72115/1‑150 (MQ=255)
                                                                                  cgccTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCa                                                                    >  2:1256413/1‑150 (MQ=255)
                                                                                    ccTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGc                                                                  >  1:3368082/1‑150 (MQ=255)
                                                                                     cTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCa                                                                 <  2:3526634/150‑1 (MQ=255)
                                                                                       aCCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAAt                                                               <  2:103725/150‑1 (MQ=255)
                                                                                       aCCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAAt                                                               <  2:253228/150‑1 (MQ=255)
                                                                                       aCCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAAt                                                               <  1:2862712/150‑1 (MQ=255)
                                                                                        ccGCCTGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCaagg                                                              <  2:3760653/150‑3 (MQ=255)
                                                                                           ccAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCa                                                           <  1:1718619/150‑1 (MQ=255)
                                                                                           acAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCa                                                           <  2:2203158/149‑1 (MQ=255)
                                                                                              gTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGc                                                        <  2:1105497/150‑1 (MQ=255)
                                                                                                  ggTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCa                                                    <  1:455735/150‑1 (MQ=255)
                                                                                                   gTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAg                                                   <  2:3777304/150‑1 (MQ=255)
                                                                                                   gTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAAGTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAg                                                   <  1:3758899/150‑1 (MQ=255)
                                                                                                     aaCGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGAt                                                 >  2:1095134/1‑150 (MQ=255)
                                                                                                      aCGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATa                                                <  2:2875144/150‑1 (MQ=255)
                                                                                                           gCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAat                                           <  1:896321/150‑1 (MQ=255)
                                                                                                           gCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAat                                           <  1:3425080/150‑1 (MQ=255)
                                                                                                             ccgccgCGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAatca                                         <  2:4026579/150‑1 (MQ=255)
                                                                                                              cgccgcGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAatcat                                        <  1:3332453/150‑1 (MQ=255)
                                                                                                               gccgcGAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAatcatc                                       >  1:3573998/1‑150 (MQ=255)
                                                                                                                 cgcgAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCaa                                     >  1:2040068/1‑150 (MQ=255)
                                                                                                                    gAGCTTAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCAACAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAAccc                                  <  2:1137623/150‑1 (MQ=255)
                                                                                                                        ttAACTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCcgcgc                              >  2:4018541/1‑150 (MQ=255)
                                                                                                                            cTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTa                          <  1:3546430/150‑1 (MQ=255)
                                                                                                                            cTGCCATTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTa                          >  2:3176910/1‑150 (MQ=255)
                                                                                                                             tGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTaa                         <  2:3346312/150‑1 (MQ=255)
                                                                                                                             tGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTaa                         >  1:498483/1‑150 (MQ=255)
                                                                                                                                 aTTTCATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGga                     <  2:2183277/150‑1 (MQ=255)
                                                                                                                                  tttCATAATTTACCACCAGCGTCAGCCAGCCCATCGACAGATAGGTCAACAGAGTTCATATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATAACCAGCAATGACAGGCTCCAGATATCTATCATCAACCCGCGCGCTAACGgag                    <  2:4126492/150‑1 (MQ=255)
                                                                                                                                    tCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGaa                  >  1:2614265/1‑150 (MQ=255)
                                                                                                                                     cATAAATTACCACCAGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAAt                 <  2:2960798/150‑1 (MQ=255)
                                                                                                                                      aTAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCGAACGGAGAATc                <  1:1743964/150‑1 (MQ=255)
                                                                                                                                        aaaTTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATCCa              <  1:1049288/150‑1 (MQ=255)
                                                                                                                                          aTTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATCCAGc            >  2:3056676/1‑150 (MQ=255)
                                                                                                                                              ccaccaGAGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATCCAGCCcca        >  2:429443/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
AGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATAAACCACGCCGCCTACCGCCAGTAAGGTAACGCTGCCCGCCGCGAGCTTAACTGCCATTTCATAAATTACCACCAGCGACAGCCAGCCCATCGCCAGATAGGTCACCAGAGATAAAATTTTGAATCGGTGCGCGATGGTCAGTTTAAACAGAATACCCAGCAATGCCAGGCTCCAGATAACAATCATCAACCCGCGCGCTAACGGAGAATCCAGCCCCACCAGCA  >  CP009273/3035903‑3036200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A