Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,986,781 T→A 27.9% I443I (ATT→ATA)  ygeH → putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,986,7810TA27.9% 250.5 / 113.1 132I443I (ATT→ATA) ygeHputative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (33/62);  new base A (16/21);  total (49/83)
Fisher's exact test for biased strand distribution p-value = 4.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 135 total aligned reads displayed.

TGTATAGACAAATCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTA  >  CP009273/2986632‑2986930
                                                                                                                                                     |                                                                                                                                                     
tGTATAGACAAATCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAAtt                                                                                                                                                       <  2:4567296/150‑1 (MQ=255)
     aGACAAATCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGacaa                                                                                                                                                  <  2:3803267/150‑1 (MQ=255)
     aGACAAATCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGacaa                                                                                                                                                  <  2:2822435/150‑1 (MQ=255)
       aCAAATCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGacaaca                                                                                                                                                <  2:4165269/150‑1 (MQ=255)
        cAAATCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACAt                                                                                                                                               >  1:2090555/1‑150 (MQ=255)
          aaTCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACAttt                                                                                                                                             <  2:792884/150‑1 (MQ=255)
          aaTCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACAttt                                                                                                                                             <  2:256445/150‑1 (MQ=255)
          aaTCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACAttt                                                                                                                                             <  2:256444/150‑1 (MQ=255)
           aTCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACAtttt                                                                                                                                            <  2:85588/150‑1 (MQ=255)
               cTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGaaa                                                                                                                                        >  1:3477107/1‑150 (MQ=255)
                 aCAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAAtt                                                                                                                                      <  2:3094822/150‑1 (MQ=255)
                 aCAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAAtt                                                                                                                                      >  2:152730/1‑150 (MQ=255)
                  cAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTa                                                                                                                                     <  1:2708851/150‑1 (MQ=255)
                    aCTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTaaa                                                                                                                                   >  1:7066/1‑150 (MQ=255)
                            ccAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGa                                                                                                                           <  2:3321693/150‑1 (MQ=255)
                             cAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGAc                                                                                                                          >  1:711509/1‑150 (MQ=255)
                             cAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGAc                                                                                                                          <  1:2643447/150‑1 (MQ=255)
                             cAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGAc                                                                                                                          <  1:2644361/150‑1 (MQ=255)
                             cAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGAc                                                                                                                          >  1:2231084/1‑150 (MQ=255)
                               gaagaCGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACga                                                                                                                        >  1:1112892/1‑150 (MQ=255)
                               gaagaCGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACga                                                                                                                        >  2:3359783/1‑150 (MQ=255)
                               gaagaCGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACga                                                                                                                        >  2:3359946/1‑150 (MQ=255)
                                aagaCGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACgag                                                                                                                       >  2:2065578/1‑150 (MQ=255)
                                  gaCGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGaa                                                                                                                     >  1:2810371/1‑150 (MQ=255)
                                   aCGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAAt                                                                                                                    <  1:683619/150‑1 (MQ=255)
                                         aGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTAt                                                                                                              <  2:4714205/150‑1 (MQ=255)
                                         aGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTAt                                                                                                              >  1:1899647/1‑150 (MQ=255)
                                          gCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATg                                                                                                             <  2:4052490/150‑1 (MQ=255)
                                          gCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATg                                                                                                             <  2:3127915/150‑1 (MQ=255)
                                            aGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCg                                                                                                           >  2:2343193/1‑150 (MQ=255)
                                            aGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCg                                                                                                           >  2:2343202/1‑150 (MQ=255)
                                               tgtgATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATa                                                                                                        <  1:3820814/150‑1 (MQ=255)
                                                  gATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAAt                                                                                                     >  1:2100836/1‑150 (MQ=255)
                                                  gATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAAt                                                                                                     >  1:440399/1‑150 (MQ=255)
                                                    tAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAAttt                                                                                                   <  2:4460502/150‑1 (MQ=255)
                                                       aaGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTa                                                                                                >  2:1395440/1‑150 (MQ=255)
                                                        aGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTAt                                                                                               <  1:2378002/150‑1 (MQ=255)
                                                           aTGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGa                                                                                            >  2:4304224/1‑150 (MQ=255)
                                                             gtgtAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACg                                                                                          >  1:4649385/1‑150 (MQ=255)
                                                                tAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCaa                                                                                       <  1:4208814/150‑1 (MQ=255)
                                                                   atatGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAAttt                                                                                    >  1:1961803/1‑150 (MQ=255)
                                                                   atatGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAAttt                                                                                    <  1:193289/150‑1 (MQ=255)
                                                                   atatGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAAttt                                                                                    <  2:4390083/150‑1 (MQ=255)
                                                                    tatgtatgTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAAtttt                                                                                   >  1:3694849/1‑150 (MQ=255)
                                                                      tgtatgtGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTttat                                                                                 >  2:4815739/1‑150 (MQ=255)
                                                                       gtatgtGCCTAACCCTCTCAAAAACAACATTAAACTCTAATATAAAGAAACGGAGAGTGAAAGCCATAGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGATTTTGTATGCGATAAATTTTTATTGACGCAATTttatt                                                                                <  1:1733047/150‑1 (MQ=255)
                                                                       gtatgtGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTttatt                                                                                <  2:3094462/150‑1 (MQ=255)
                                                                       gtatgtGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTttatt                                                                                <  2:4750805/150‑1 (MQ=255)
                                                                       gtatgtGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTttatt                                                                                <  2:146795/150‑1 (MQ=255)
                                                                       gtatgtGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTttatt                                                                                <  2:145386/150‑1 (MQ=255)
                                                                         atgtGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTtattat                                                                              >  1:2293233/1‑150 (MQ=255)
                                                                         atgtGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTtattat                                                                              <  1:1631381/150‑1 (MQ=255)
                                                                           gtgCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAACGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTAttt                                                                            <  1:3405812/150‑1 (MQ=255)
                                                                           gtgCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTAttt                                                                            <  2:7066/150‑1 (MQ=255)
                                                                             gCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAg                                                                          <  1:3572576/150‑1 (MQ=255)
                                                                             gCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAg                                                                          <  1:3572000/150‑1 (MQ=255)
                                                                              ccTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGa                                                                         <  1:153963/150‑1 (MQ=255)
                                                                                tAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATg                                                                       <  1:1268629/150‑1 (MQ=255)
                                                                                tAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATg                                                                       >  2:655062/1‑150 (MQ=255)
                                                                                tAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATg                                                                       <  1:3728535/150‑1 (MQ=255)
                                                                                 aaCCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGt                                                                      <  1:1696010/150‑1 (MQ=255)
                                                                                 aaCCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGt                                                                      >  1:481232/1‑150 (MQ=255)
                                                                                             aacaacATTAAACTCTACTATAAAGAAACTTAGAGTGAAAGCCATAGAGTTATAATAGACAACATTTTTAAATTATATCAGCTGACGAGAATTTGTATGAGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGtt                                                          <  2:575632/150‑1 (MQ=255)
                                                                                             aacaacATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGtt                                                          <  1:1761766/150‑1 (MQ=255)
                                                                                              acaacaTTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTa                                                         >  1:4246315/1‑150 (MQ=255)
                                                                                                aacaTTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTAtt                                                       <  1:4233556/150‑1 (MQ=255)
                                                                                                        aCTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAaacaac                                               <  2:3603743/150‑1 (MQ=255)
                                                                                                        aCTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAaacaac                                               <  2:3603306/150‑1 (MQ=255)
                                                                                                         ctctACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAacaaca                                              <  2:2231145/150‑1 (MQ=255)
                                                                                                            tactaTAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACagag                                           <  1:2914898/150‑1 (MQ=255)
                                                                                                            tactaTAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACagag                                           <  1:1104312/150‑1 (MQ=255)
                                                                                                            tactaTAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACagag                                           <  1:1104303/150‑1 (MQ=255)
                                                                                                              ctaTAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGAt                                         <  2:433065/150‑1 (MQ=255)
                                                                                                              ctaTAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGAt                                         <  2:1192586/150‑1 (MQ=255)
                                                                                                              ctaTAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGAt                                         <  2:433052/150‑1 (MQ=255)
                                                                                                              ctaTAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGAt                                         <  2:431626/150‑1 (MQ=255)
                                                                                                                ataAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATaa                                       <  1:4010554/150‑1 (MQ=255)
                                                                                                                ataAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATaa                                       <  1:4720822/150‑1 (MQ=255)
                                                                                                                ataAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATaa                                       <  2:841558/150‑1 (MQ=255)
                                                                                                                ataAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATaa                                       <  2:2090555/150‑1 (MQ=255)
                                                                                                                ataAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATaa                                       >  2:4012672/1‑150 (MQ=255)
                                                                                                                   aaGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATaaaaa                                    >  1:1168593/1‑150 (MQ=255)
                                                                                                                     gAAACTGAGAGTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAata                                  >  1:2827004/1‑150 (MQ=255)
                                                                                                                          tGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTaa                             >  2:1596665/1‑150 (MQ=255)
                                                                                                                            agagTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGa                           >  2:4504443/1‑150 (MQ=255)
                                                                                                                             gagTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGat                          <  2:2855370/150‑1 (MQ=255)
                                                                                                                             gagTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGat                          <  2:2856484/150‑1 (MQ=255)
                                                                                                                              agTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGata                         >  1:4381322/1‑150 (MQ=255)
                                                                                                                              agTGAAAGCCATCGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGata                         <  1:950284/150‑1 (MQ=255)
                                                                                                                                   aaGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCAc                    >  2:2734246/1‑150 (MQ=255)
                                                                                                                                   aaGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCAc                    >  2:3101085/1‑150 (MQ=255)
                                                                                                                                    aGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCAcc                   <  1:1307313/150‑1 (MQ=255)
                                                                                                                                          cGAGTTATAATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTg             >  1:1478391/1‑150 (MQ=255)
                                                                                                                                              ttATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAg         <  2:2337292/150‑1 (MQ=255)
                                                                                                                                               tataATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGa        <  2:2293233/150‑1 (MQ=255)
                                                                                                                                               tataATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGa        <  1:3441923/150‑1 (MQ=255)
                                                                                                                                               tataATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGa        >  2:1862629/1‑150 (MQ=255)
                                                                                                                                               tataATAGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACATTATTGCAAGa        >  2:3655479/1‑150 (MQ=255)
                                                                                                                                                   aTTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATAtt    <  2:1701546/150‑1 (MQ=255)
                                                                                                                                                     tGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTa  <  2:2100836/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGTATAGACAAATCACTACAACTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACATTAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGAGAATTTGTATGCGATAAATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTA  >  CP009273/2986632‑2986930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A