Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R2 44 314.5 5848508 99.3% 5807568 128.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA AssemblyC74_contig_12 59,272 G→A T22T (ACC→ACT)  rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AssemblyC74_contig_1259,2720GA100.0% 963.2 / NA 275T22T (ACC→ACT) rasttk_feature_annotation_tool=annotate_proteins_km er_v2Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (146/129);  total (146/129)

Only 100 of 275 total aligned reads displayed.

GTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑C  >  AssemblyC74_contig_12/59141‑59337
                                                                                                                                   |                                                                                                                           
gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                                          <  1:1728804/135‑1 (MQ=17)
gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                                          <  2:1221001/135‑1 (MQ=17)
 tCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTa                                                                                                                         >  1:1066388/1‑135 (MQ=17)
   tGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGa                                                                                                                       <  2:4050/135‑1 (MQ=17)
   tGACTGCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAa                                                                                                                        >  1:2157109‑M1/1‑133 (MQ=255)
    gACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaac                                                                                                                      >  2:680881‑M1/1‑132 (MQ=255)
     aCTTCTTTCGATCTCAATCTCGATTGGTGTCGCATCTAATTCATACCTTATTGGCGCTTGAGTTTCTACCATCTGATATGCTCCTGGTGATAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAAAcc                                                                                                                     <  2:1086044/135‑1 (MQ=14)
     aCTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaacc                                                                                                                     >  2:2618234‑M1/1‑131 (MQ=255)
      cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccg                                                                                                                    >  1:2846144/1‑134 (MQ=14)
      cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccg                                                                                                                    >  1:1885801/1‑134 (MQ=14)
      cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccg                                                                                                                    >  2:2473639/1‑134 (MQ=14)
        tcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                                                  <  1:2552713/135‑4 (MQ=14)
         cttTCGATCTCAAACTCGATTGGTTACGCATCTAATTCATACCCTAATGGCGCTTGGGTTTCTACCAGCTGATATGATCCTGGTGATAAACCGTCAATTGCCAGTTTTCCATCTTATACTGTAGTTAAAccggtt                                                                                                                 >  2:141596/1‑131 (MQ=12)
         cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtt                                                                                                                 >  1:2038191‑M1/1‑127 (MQ=255)
         cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                                 <  2:1284108/135‑5 (MQ=14)
         cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                                 <  1:1887306/135‑5 (MQ=14)
         cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAAAccggtt                                                                                                                 <  1:814796/135‑5 (MQ=14)
         cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                                 <  2:2835504/135‑5 (MQ=14)
         cttTCGATCTCAAACTCGATAGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCCTCTTCTCCTGTAGTTAGAccggtt                                                                                                                 <  1:2673550/135‑5 (MQ=14)
            tCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAg                                                                                                                        >  1:36485/1‑125 (MQ=17)
            tCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAg                                                                                                                        <  2:776948/125‑1 (MQ=17)
                                  tCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttc                                                                                         <  2:486857‑M1/134‑33 (MQ=255)
                                  tCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcgg                                                                                            >  1:1393113‑M1/1‑102 (MQ=255)
                                     cATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgt                                                                                      >  1:521795‑M1/1‑99 (MQ=255)
                                     cATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgt                                                                                      >  1:1024836‑M1/1‑99 (MQ=255)
                                       tctaattcATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaa                                                                                    >  2:1172012‑M1/4‑97 (MQ=255)
                                             tCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaa                                                                              >  2:1095191‑M1/1‑91 (MQ=255)
                                                  ccctattggcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                                            >  1:1867372‑M1/6‑86 (MQ=255)
                                                  ccctattggcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                                            <  2:1867372‑M1/126‑46 (MQ=255)
                                                   cctattggcgCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagc                                                                        >  1:940239‑M1/5‑85 (MQ=255)
                                                   cctattggcgCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagc                                                                        >  1:1176656‑M1/5‑85 (MQ=255)
                                                        tGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                                  <  2:390949‑M1/135‑56 (MQ=255)
                                                        tGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                                  >  1:53889‑M1/1‑80 (MQ=255)
                                                         ggCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttga                                                                 >  1:2225330‑M1/1‑79 (MQ=255)
                                                          gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                                                >  2:257765‑M1/1‑78 (MQ=255)
                                                          gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                                                >  2:1633713‑M1/1‑78 (MQ=255)
                                                          gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                                                >  1:731267‑M1/1‑78 (MQ=255)
                                                          gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                                                >  1:2508226‑M1/1‑78 (MQ=255)
                                                          gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                                                >  1:1310451‑M1/1‑78 (MQ=255)
                                                          gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttatccttctcggttctgtaactcaaaaacagctccttgaa                                                                >  1:2718948‑M1/1‑78 (MQ=255)
                                                             cTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaagga                                                             <  2:2402076‑M1/135‑61 (MQ=255)
                                                                gggTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATAGCCAGTTTTCCATCTTCTCCTGTAGTTAGACCTGTGTGAAGATGTTCTCCTTAGCCTTTATGTAACTCAAAAACAGCTCCTTGCAGGaaat                                                          >  2:2069885/1‑132 (MQ=9)
                                                                gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                                          >  1:1368443‑M1/3‑72 (MQ=255)
                                                                gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                                          >  1:2012813‑M1/3‑72 (MQ=255)
                                                                gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                                          >  1:2063936‑M1/3‑72 (MQ=255)
                                                                gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                                          >  1:1123654‑M1/3‑72 (MQ=255)
                                                                  gTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAtaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                                         >  2:910036‑M1/1‑70 (MQ=255)
                                                                  gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaactgctccttgaaggacttc                                                         >  2:1751495‑M1/1‑70 (MQ=255)
                                                                  gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                                         >  2:338233‑M1/1‑70 (MQ=255)
                                                                  gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTATTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                                         >  2:2858251‑M1/1‑70 (MQ=255)
                                                                   tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                                        <  1:1686257‑M1/134‑66 (MQ=255)
                                                                   tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                                        <  2:2268162‑M1/134‑66 (MQ=255)
                                                                   tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                                        <  2:1017754‑M1/134‑66 (MQ=255)
                                                                            gCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                                              <  1:2900466‑M1/135‑76 (MQ=255)
                                                                               gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                                              <  1:2686662‑M1/126‑76 (MQ=255)
                                                                               gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                                              <  1:964802‑M1/126‑76 (MQ=255)
                                                                               gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                                              <  1:428907‑M1/126‑76 (MQ=255)
                                                                                atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcct                                                                    <  1:760724‑M1/104‑54 (MQ=255)
                                                                                   tgctcCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctcctgctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatg                                       >  2:2732011‑M1/3‑53 (MQ=255)
                                                                                       ccaggtgcTACACCGACAATTGCCAGTATTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                    <  2:739565‑M1/131‑86 (MQ=255)
                                                                                       ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                    <  2:727837‑M1/134‑86 (MQ=255)
                                                                                       ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                    <  2:2787433‑M1/134‑86 (MQ=255)
                                                                                       ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                    <  1:1523312‑M1/134‑86 (MQ=255)
                                                                                         tGGTGCTAAACCGTCAATTGCCAGTTTTCCAACATCTCCTGTAGTTAcaccggtttggagcgttactccttctcgtttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaat                                 <  2:2019871‑M1/135‑89 (MQ=255)
                                                                                          ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttc                                                                                         <  1:1006259‑M1/78‑33 (MQ=255)
                                                                                          ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctctgttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt                                <  2:160504‑M1/135‑90 (MQ=255)
                                                                                          ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt                                >  2:2037091‑M1/1‑46 (MQ=255)
                                                                                           gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta                               >  2:171755‑M1/1‑45 (MQ=255)
                                                                                           gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta                               <  2:2147516‑M1/135‑91 (MQ=255)
                                                                                             gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaatcagctccttgaaggacttcaccactgccttcagcatgtttaattag                              >  2:1131257‑M1/1‑43 (MQ=255)
                                                                                             gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag                              >  1:1754228‑M1/1‑43 (MQ=255)
                                                                                                 aaccgtCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaa                         >  1:1954361‑M1/3‑39 (MQ=255)
                                                                                                   ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac                        >  2:1298253‑M1/1‑37 (MQ=255)
                                                                                                    cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac                      <  2:1985812‑M1/135‑100 (MQ=255)
                                                                                                     gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc                     <  1:757054‑M1/135‑101 (MQ=255)
                                                                                                     gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc                     <  2:1195177‑M1/135‑101 (MQ=255)
                                                                                                     gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta                               >  1:7057‑M1/1‑35 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTATTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggccttctccactgccttccgcatgtttaattagttcaacaccaccc                 >  2:356771‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                    <  2:848775‑M1/113‑86 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  2:1688903‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  2:511074‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  1:1091686‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  1:1239603‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  2:2322448‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  1:233888‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  1:2405922‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  2:1469491‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  1:2731504‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                 >  1:655644‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacaaccc                 >  2:2443538‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta                               <  2:1808519‑M1/118‑91 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta                               >  1:1808519‑M1/4‑31 (MQ=255)
                                                                                                         attgccaGTTTTCCATCTTCTCCTGTAGTAAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccacagccttcaccatgtataattagttcaacaccaccc                 >  2:823279‑M1/4‑31 (MQ=255)
                                                                                                               aGTTGTCCATCTTCTCCTGTAGTTAaaccggttggtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatca           <  2:317024‑M1/135‑111 (MQ=255)
                                                                                                                gTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaa          >  2:640021‑M1/1‑24 (MQ=255)
                                                                                                                    tCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggat      >  1:1596524‑M1/1‑20 (MQ=255)
                                                                                                                        tcttctCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt  <  1:910036‑M1/135‑120 (MQ=255)
                                                                                                                        tcttctCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt  <  2:529541‑M1/135‑120 (MQ=255)
                                                                                                                        tcttctCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt  <  1:2618234‑M1/135‑120 (MQ=255)
                                                                                                                        tcttctCATGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactaaaaaacagctccttgaaggtcttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt  <  2:48337‑M1/135‑120 (MQ=255)
                                                                                                                                   |                                                                                                                           
GTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑C  >  AssemblyC74_contig_12/59141‑59337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A