mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,843,311 | 0 | C | A | 77.8% | 78.4 / 18.1 | 45 | P314Q (CCG→CAG) | gdhA | glutamate dehydrogenase, NADP‑specific |
| * | NC_000913 | 1,079,053 | 0 | T | . | 73.7% | 66.7 / 40.9 | 39 | intergenic (‑171/‑252) | putA/putP | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase/proline:sodium symporter |
| * | NC_000913 | 4,296,191 | 0 | A | C | 33.3% | 23.1 / 26.1 | 36 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 28.6% | 32.1 / 17.0 | 36 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 25.8% | 34.1 / 11.3 | 32 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 58 (1.340) | 4 (0.100) | 4/582 | 5.1 | 6.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 64 (1.530) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1722616 = | 30 (0.700) | 4 (0.100) | 4/578 | 5.1 | 12.0% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1722612 | 30 (0.720) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | NC_000913 | = 1539752 | 38 (0.880) | 3 (0.070) | 3/580 | 5.6 | 8.7% | coding (2839/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
| ? | NC_000913 | = 1539851 | 26 (0.620) | coding (2740/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit | |||||
| * | ? | NC_000913 | = 4017868 | 57 (1.320) | 4 (0.100) | 3/584 | 5.7 | 6.8% | coding (536/1428 nt) | rmuC | DNA recombination protein |
| ? | NC_000913 | = 4017969 | 55 (1.310) | coding (637/1428 nt) | rmuC | DNA recombination protein | |||||
| * | ? | NC_000913 | 2928130 = | 25 (0.580) | 3 (0.070) | 3/590 | 5.7 | 10.4% | intergenic (+458/‑99) | ygdH/sdaC | UPF0717 family protein/putative serine transporter |
| ? | NC_000913 | 2928192 = | 27 (0.640) | intergenic (+520/‑37) | ygdH/sdaC | UPF0717 family protein/putative serine transporter | |||||
| * | ? | NC_000913 | = 2918325 | 43 (1.000) | 3 (0.070) | 3/584 | 5.7 | 6.8% | coding (1061/1341 nt) | gudD | D‑glucarate dehydratase 1 |
| ? | NC_000913 | = 2918494 | 41 (0.980) | coding (892/1341 nt) | gudD | D‑glucarate dehydratase 1 | |||||
| * | ? | NC_000913 | = 1924186 | 39 (0.900) | 3 (0.070) | 3/588 | 5.7 | 7.8% | coding (406/873 nt) | yebZ | inner membrane protein |
| ? | NC_000913 | = 1924268 | 33 (0.780) | coding (324/873 nt) | yebZ | inner membrane protein | |||||
| * | ? | NC_000913 | 1770118 = | 64 (1.480) | 3 (0.070) | 3/586 | 5.7 | 5.1% | coding (1045/1113 nt) | ydiK | UPF0118 family inner membrane protein |
| ? | NC_000913 | = 3841198 | 48 (1.140) | coding (542/1191 nt) | nepI | putative transporter | |||||
| * | ? | NC_000913 | = 1551228 | 33 (0.760) | 4 (0.090) | 3/586 | 5.7 | 10.8% | coding (768/885 nt) | fdnH | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
| ? | NC_000913 | = 1551379 | 34 (0.810) | coding (42/654 nt) | fdnI | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible | |||||
| * | ? | NC_000913 | 1538062 = | 45 (1.040) | 3 (0.070) | 3/586 | 5.7 | 7.1% | coding (792/1545 nt) | narY | nitrate reductase 2 (NRZ), beta subunit |
| ? | NC_000913 | 1538115 = | 34 (0.810) | coding (739/1545 nt) | narY | nitrate reductase 2 (NRZ), beta subunit | |||||