Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F9 I0 R1
|
105 |
139.1 |
2894862 |
97.5% |
2822490 |
224.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,708,758 |
G→C |
8.8% |
E614Q (GAA→CAA) |
rsxC → |
SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,708,758 | 0 | G | C | 8.8%
| 152.0
/ 3.1
| 66 | E614Q (GAA→CAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (36/22); new base C (3/3); total (41/25) |
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGC > NC_000913/1708523‑1708993
|
cAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCagaaga < 1:1206975/237‑1 (MQ=255)
cAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTAGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCagaaga < 1:1350647/237‑1 (MQ=255)
gagCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAg > 1:490247/1‑239 (MQ=255)
agCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGCCCGTGCCAAAGCACGCAACCTGGAACAG‑CAACAGGCTAATGCGGAGCCAGAACAACAg > 2:1252393/1‑238 (MQ=255)
agCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAgg > 1:320723/1‑239 (MQ=255)
agCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAgg > 1:1405592/1‑239 (MQ=255)
aaCAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAt < 1:1400812/239‑1 (MQ=255)
tGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:829277/1‑239 (MQ=255)
cagcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCAAAGCCCGAAAACTGGACCAG‑CAAAAGGCTGATACCGAACCAGAAAACCAGGTCGTTCCCCCCAAAgccg > 2:6193/1‑238 (MQ=18)
cagcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGACCAG‑CAACCGGCTAATGCGGAACCAGAAGAACAGGTCGATCCCCGCAAAgccg > 1:386034/1‑238 (MQ=255)
aaCTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGGGCCAAAGCGCGCAAAATGGAACAG‑CAACAGGCTACTGCGGAAACAGAAGCACAGGTCGATCCGAACAAAACAGCCGTCg > 2:73520/1‑239 (MQ=18)
cagcaACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGTAACCAGAAGAACAGGTCGATCCCCGCAAAGCCGCCGACGAAGCCCCTAtt > 1:819935/1‑239 (MQ=255)
gTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTCCCCGTg > 1:91151/1‑238 (MQ=255)
gCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGATCCAGAAGAACACGTCGACCCGCGCAACGCCGCCGTCCACGCGGCTATTGCCAGCGccca > 2:1014432/1‑237 (MQ=17)
gCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaa > 1:182660/1‑239 (MQ=255)
tCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATTCGAGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCAGCCACAAACGGCGGTCGCAGCGACTACTGCCCGTGCCAAAGCAc > 2:1033369/1‑239 (MQ=17)
cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGAAAACTGGACCAG‑CAACAGGCTAATGCGGAACCAGAAGAACCGGTCGATCCGCGCAAAGCCGCAGACGAAGCGGCTATTGCCCggccacaagcgcgaaa > 2:74991/1‑224 (MQ=14)
aaaaCTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGc < 1:1323040/238‑1 (MQ=255)
ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCagaaga < 1:1210052/169‑1 (MQ=255)
ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCagaaga > 2:1210052/1‑169 (MQ=255)
ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGCAGCGGCTCTTGCCCTCGCCAAAGCAC‑CCCAGCTGGcaca > 2:478294/1‑238 (MQ=14)
cGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGACCGGGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAACCGCCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAG‑GCCAGCGTGAACAGc > 2:701124/1‑239 (MQ=14)
tGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGACCAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCaa < 1:208952/238‑1 (MQ=255)
tGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCaa < 1:240610/238‑1 (MQ=255)
agcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCt < 1:1078485/238‑1 (MQ=255)
tatgggcgctgacaaaaagcgcAAACGAGAACAGCAACAGGCTCATGCCGAGCCAGAACACCAGCTCGATCCGCGCAACGCCGGCGTGGAAGCCGCGAGTGCGCGAGCCAAAGCGAGCAAACGGGAACAG‑CAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATg < 2:1254558/221‑1 (MQ=14)
aTCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGc < 1:28777/239‑1 (MQ=255)
tcgacgtcgccgaaagccgcAAGCGGGAAGAGCAACAGGTAAATAACGAGCCAGAACACCAGGACGACCGGCGAAAAGCGGCCGCCGAAGCCGCTATCGCCCGTGCAAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGc < 2:256993/221‑1 (MQ=14)
cagagcaaaaGGGGGCAAGCGGAAACAGCAACAGGAAAATGAGGACCCAGAACAACAGGCAGATGCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGc < 2:1202239/232‑1 (MQ=14)
tggcgaaaGCGCTCAAGCGGGAAATGAGATAGGTAAACGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCAAAAGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa < 2:182660/234‑1 (MQ=14)
gcgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCCAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCCCCGTTGACGCGGCTATGGACCGTGCGACGGCCC‑GCACACTGGAGCAGCAACAGGCTacggcggcgccc > 2:1139505/1‑228 (MQ=14)
tgcCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAACGGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGTAGCCGATATTCCCCGTGCCAAAGCAC‑ACAAACTGCAGCAGCAACACGCTAATCACGAGccca > 2:1022766/2‑237 (MQ=11)
cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCAC‑GCAAACTGGAACAGCAACAGGCTAATGCCGACCCAg > 1:32654/1‑239 (MQ=255)
cgcCAAAGCGCGCAAGCTCGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAACCGCCGTCGACGCCGCTATTCCCCGTGCCCAAACGCGCAAGTTGGACCAG‑CAACAGGCTAATGCGGAACCCGAACAACAGGTCGATCCACGACAAGCCGCCGTTGAGGCAGCCATTGCCTGTGCCAAATCACTCCAAGC‑GGACCAGCAACAgcttcctcatgtttcag > 2:691633/1‑223 (MQ=11)
aaaGCCGGCAAGAAGGAACAGCAACAGGAACATGAGAAAGCAGAACACCAGGCCGAACCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 2:763711/239‑1 (MQ=14)
cgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCAC‑ACAAGATGGAACAGCAACCGGCTACTGCCGACGCAAACCAACAga > 2:1370547/1‑237 (MQ=14)
cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAACCAGAAGAACAGGTCGATCCGCCCAAAg > 1:266038/1‑238 (MQ=255)
cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACTGGACCAG‑CAGCAGGCTAATGCGCAGCCACAAAAACAGGTCGGTCCGCGCAAACCCGCCGTCGAGGCGGCTATTCCCCGTGCCAAGGCAC‑GCAAGCCGAAAAAGCAACGGTCGAATACCGCGCCCGaaaacacggctaccccacccaaac > 2:310571/1‑216 (MQ=2)
ggCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTCGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCC‑GCAAGCTGGACCAGCAACAGGCTAATGCCGCGCCAGAACAACAGGTCGATCCGCGCAAAGccgccg > 1:576212/1‑239 (MQ=255)
tagCGGGACCAGAACACCAGGACGCTCGGCGGAAAGCCGCCGGCGAAGCAGCTATCGCCCGGGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa < 2:1380024/237‑1 (MQ=14)
tGCGGACCCGGACAAACGGGTGGATCCGCAGAAAGCCGCCAGTGAAGCCGCAAGTGCCCGGGCCAAAGGGCGGAAGCTGGAACAG‑CAACAGGCGAAGGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 2:1405592/239‑1 (MQ=14)
aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGc > 1:1214964/1‑238 (MQ=255)
aacaacAGGTCGATCCGCGCAAAGACGCCGTCGAAGCCGCTATTGCTCGTGCCAAAGCGCGCAAGCAGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGACGACGCCGCTATTGCCCGGGCCAAAGCGG‑CAAAGAGGGAAGCGCAACAGGCTGATACAGCGCCGCAACAGCAGACCGAGCCGCGGATAGccgccggcacatacacactcgc > 2:995044/1‑222 (MQ=9)
gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGACGATCCGCGCAAAGCAGCCGTCGCTGCCGCTATTGCCCgcaccca > 1:1006619/1‑233 (MQ=14)
ggaccgaccaaatactgccgccGAAGCCGCTATGGCCCGAGCAAGAGCGGGAAAGCTGGAACAG‑CAACAGGATAATGCGGAACAAGAAGAACAGGCCGATCCGCGCAAAGCCGCCGGCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa < 2:210456/222‑1 (MQ=14)
cGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCaaa > 1:845688/1‑238 (MQ=255)
ctgAAGCCGCGATTGCGCGTGCCCAAGCGCTCCGGCT‑GTACAGACGACGGGCTATTGCGGAACCAGCAGACGTGGCCGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa < 2:819935/237‑1 (MQ=14)
gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGACGCAGCTATTGCCCGCGCTCAAGCCA‑GCAACCAGGACCAGCAAAAGGCTAATGCGGACCCCGAAGACCAGGGCGATCCGCGCAAAGCCGCCGTAGCCGCGAATATTGCCCGAGCCAAAAGACGCAAGCggcgccagcacac > 2:823621/1‑228 (MQ=2)
cGCTATTGCCCGCGCAAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt < 1:770740/238‑1 (MQ=255)
gCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCaga > 1:1117526/1‑239 (MQ=255)
gCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGACCGAGCCAAAGCGCGACAGCCGGAACAGCACACGGCCACATCGGAGCCaga > 2:624478/1‑239 (MQ=14)
aaaGGGAGCAAGCAGGAACAG‑CAACAGGCAAATAAGGAGCCAGAACAAGAGGCGGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATGGCCCGTGCCAAAGCGC‑GCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 2:1292618/239‑1 (MQ=11)
aaaGCGGGAAAGCTGAAAAAG‑CAACAGGAAAATACGGACGCAGAACAACAGGTCGATCCGGGAAAAACCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 2:1271610/239‑1 (MQ=14)
aaGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga > 2:692520/1‑238 (MQ=255)
aGCGCGCAAGCTGGAACAG‑CAACATGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAc > 1:304023/1‑239 (MQ=255)
cgcAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAACTGGAACAGCAACAGGCTAATGCCGAGCCCGAACAACAGGTCGATCCGCGCAAAACCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCAGCAAACCGGACCAGCACCCGGCTAACACGGAgaccgcacaaccagt > 2:1230272/1‑225 (MQ=14)
cgcAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCAC‑GCAAGCTGGACCAGCAACCGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAAGACCGCAAACGGGAACAGCAACCGGCTATTGAGACACCAGACGAACAggc > 2:482862/1‑238 (MQ=14)
gcAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGa < 2:188937/127‑1 (MQ=38)
cAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt < 1:1349681/145‑1 (MQ=255)
cAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt > 2:1349681/1‑145 (MQ=255)
cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGc > 1:1020000/1‑239 (MQ=255)
cAACAGGCTAATGCCCAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGC‑GCAAGCTGGAACAGCAACAGTCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCTCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:122259/218‑1 (MQ=11)
aaCAGGCTACTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCt < 1:1057591/239‑1 (MQ=255)
ggCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTccc > 1:1254558/1‑238 (MQ=255)
actGCGGAAGCAGAGGAACAGGCCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGa < 1:1317985/237‑1 (MQ=255)
aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAAc < 1:386348/84‑1 (MQ=38)
aTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGC‑GCAAGCAGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATGCTCGCAAAGCTGCCGACGAAGCGGTTCTTGCCAGAGCCAAAGCGCGCAGACGGGCACAGGCACCGGCTATTGAGGAGCCCGAAAAAAAGGTAGAtactgcctcttatccatctct > 2:122259/1‑218 (MQ=2)
tGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGaa > 1:351467/1‑238 (MQ=255)
tGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAg < 1:758100/239‑1 (MQ=255)
aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCTGCGCAAAGCCGCCGTCGAAGCCGCt > 1:718555/1‑239 (MQ=255)
gaagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGc > 1:932648/1‑239 (MQ=255)
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CAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAG‑CAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAC‑GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGC > NC_000913/1708523‑1708993
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
