Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,708,758 G→C 24.8% E614Q (GAA→CAA)  rsxC → SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,7580GC24.8% 48.5 / 9.3 35E614Q (GAA→CAA) rsxCSoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base G (14/9);  new base C (5/2);  total (22/13)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01

CCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTG  >  NC_000913/1708522‑1708992
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           
cacgaggcaaccAGGAAAAACGGAAGCAAAATAAAGGCGACGCACCCGTGGCGAACCCAGGAAAACCCGCCGTTGAAGCAGCTAGCGCCAGCGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGGCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAgaagaa                                                                                                                                                                                                                                           <  2:518193/228‑1 (MQ=14)
 caagccGAAAACGGCAGAACTGGAGCAAACAAACGCCGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga                                                                                                                                                                                                                                            <  1:1328617/232‑1 (MQ=255)
 cAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGAACCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga                                                                                                                                                                                                                                            <  1:537189/237‑1 (MQ=255)
         aaaaGGCAAAACTGGACAAAACTAAAGCCGCAGACACCGTTGCGACACCACGTAAAACGGCCGTTGAAGCAGCTAACGCCCGCCCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAACCAGAACACCAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAt                                                                                                                                                                                                                                  <  2:1309521/236‑1 (MQ=17)
         aaCAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAACCGGACCCAGAACAAAAGGtaca                                                                                                                                                                                                                                   >  1:181228/1‑235 (MQ=255)
              gCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAAAACAGGCAGACCcgcg                                                                                                                                                                                                                             >  1:660056/1‑239 (MQ=255)
                  aaCTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCTGAACCAGAAGAACAGGCCGATCCCAGCaa                                                                                                                                                                                                                          >  1:192299/1‑238 (MQ=255)
                       cagcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGACAAGCAACAGGCTAATGCGGTGCCACACGAACAGGTCGACCGCCGCAAAcccg                                                                                                                                                                                                                     >  1:249425/1‑238 (MQ=18)
                               caaCGACGCAGCAACCGTTGCTGAACCACGAAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCCAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg                                                                                                                                                                                                            <  1:1233315/238‑1 (MQ=255)
                                           acccctgtagacccccgcaaaaaCTGCGGTACAGGCAGCCACAGCGCGCGACAAAGCGGGAAAGCTGGAACAACAACAGGAAAATGCGGAACCAGAAACACAGGCCGACCCGCGAAAAGCCGCCGTCGAAGCCGCTATGGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGccc                                                                                                                                                                                                <  2:911294/220‑1 (MQ=11)
                                                  gCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGCCGAAGCCGCTATTGACCCTGcc                                                                                                                                                                                           >  1:206414/1‑237 (MQ=255)
                                                        cccataaaaaCCCCCGTTGAAGCAGGTGTGCCCCCGGACGAAGCGCGAAAGCCGGAAAAACAACAGGCAAATGCGGACACAGAACAAGAGGCAGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACg                                                                                                                                                                                  <  2:660056/233‑1 (MQ=14)
                                                        ccACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGcc                                                                                                                                                                                                 >  1:958421/1‑225 (MQ=255)
                                                        ccACGTAAAACTGCCGGAGAAGCAGCTATCGCCCGCGCAAAAGCGGGCAAGCTGGAACAGCAACGGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCACAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACg                                                                                                                                                                                  <  1:108410/239‑1 (MQ=255)
                                                           cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAAAAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCA‑AAGCCCGCa                                                                                                                                                                                >  1:855687/1‑238 (MQ=255)
                                                                  cTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTTCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGACGACGAACCCGCCATTGCCCGGGCCA‑AAGCCCGAAACCCGGac                                                                                                                                                                        >  1:1341203/1‑238 (MQ=14)
                                                                     ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATCCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc                                                                                                                                                                                                  >  1:685540/1‑211 (MQ=255)
                                                                     ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAAAACAGGCCGATCCGCCCACACCCGCCGCCGAATCCGCTATTAACCG‑GCCACAAGCACACaacaggaaaaaa                                                                                                                                                                     >  2:493142/1‑229 (MQ=14)
                                                                         tGAAGGAGGTATGGCCCGCGACAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCaa                                                                                                                                                                  <  1:1253375/238‑1 (MQ=255)
                                                                         agAAGCAGCTATCGCCAGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGACCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCaa                                                                                                                                                                  <  1:846710/237‑1 (MQ=255)
                                                                          gAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGGTCCGCGCAAAGCCGCCGCCGAACCCGCACTTACCCGGCCCA‑AAgacaggcacccggacaccaaaaa                                                                                                                                                                >  1:7520/1‑217 (MQ=14)
                                                                                  tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACACGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGACGCAATTGACCGGGCCAAAGCGCGCAAACGGGAACAGCAACAGGATCATGCGGAGCCCGCAGAACAGGCTGACACGCGCAAAACCGCCGCGTACGCCGCCACTGCCAGAGCCC‑AACAACGCaaccaggcagcgacacagaacaaag                                                                                                                                                        >  2:950643/1‑216 (MQ=2)
                                                                                                                         ggCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACCGGAACAGCAACCGGCTAATGCGGAACCCGAAGAACAGGTCGATCCGCCCAAAGCCGCCGTCGACGCCGCTATTGCCCGTGCCA‑AAGACCACAAGCCGGCCACGCAACAGGCTAAAAACGAGCCAGAAAAACAGGtacaaacgacaaaagccgccg                                                                                                                 >  2:755283/1‑219 (MQ=14)
                                                                                                                              aTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAAAACAGGGCGATCCGCGCAAAGCCGCCGGCGAAGCCGCTATTGCCCGGGCCA‑AAGCACGCAAAACGGAACAGAAACAGGCTACTGCCGAGCCAGAACAACAAGACGaccacggcaaacccacggacgaa                                                                                                            >  2:806641/1‑217 (MQ=14)
                                                                                                                                          aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCCGAACACCAGGTCGATCCGCGCAAAGCCGCCGTCTACGCCGCCATTGc                                                                                                 >  1:846958/1‑238 (MQ=255)
                                                                                                                                                                         cGAAGCGGCTAGGGCCCGTGCAAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAAACAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa                                                                  <  1:147924/238‑1 (MQ=255)
                                                                                                                                                                                   agtGCCCGGGCAAAAGCGTGCAAGGTGAAAAAACAACAGGCTAATACGAACCCCAAACACCGGGTCGACCCGCCAAAAGCCGCCGTCGAAGCCGCTAGTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGc                                                       <  1:325811/237‑1 (MQ=14)
                                                                                                                                                                                           tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCAATTGCCCGGGCCAAAGCGCCAAAACGGGAACAGCAACCGGCTAATGCGGGTCCag                                               >  1:1353832/1‑239 (MQ=255)
                                                                                                                                                                                            gCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCA‑AAGCGCGCAAACGGGACCAGCAACAGGCTAATGCGGACCCCGAAGAACAGGTTGATCCGCGCAAAGCCGCGTTCCAAGGGGCATTTTACCGCGCCAAACACCCCAAACGGGACAAACAACAGGCAAAAACGGaaacaaa                                              >  2:1259886/1‑233 (MQ=11)
                                                                                                                                                                                               aaaggacgaaaGCTGGACCAGCAACAGGCTAATGGGGAACCAGAAGAACAGGGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga                                           <  1:1306377/230‑1 (MQ=255)
                                                                                                                                                                                               aaaGCGCCAAAACGGGAACAGCAACAGGCAAAGGCGGAACCAGAAAAACCGGTCGACCCGGGAAAAGCCGCCGACGAAGCCGCTATGGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGATAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga                                           <  1:126678/239‑1 (MQ=14)
                                                                                                                                                                                                 aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga                                                                                                                                                                                                                                            >  2:305056/1‑45 (MQ=35)
                                                                                                                                                                                                 aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGc                                                                                                                                                                                                           >  1:1083632/1‑78 (MQ=34)
                                                                                                                                                                                                      gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGAAAGCTGGAACAGCAACAGGCTAATGCGGCACCAGACGAACAGGTCGATCCGCGCAAAACGGCCGTACACGCCGCGCATCGCCGCGCACAGACCCGCAAACCGGCCCCGCAACCGGCTaaaggcgagagcaacaacaaaacg                                    >  2:1325149/1‑217 (MQ=11)
                                                                                                                                                                                                                    ccaaaGGCTAATGCGGAACCAGAAACACCGGTCGAACCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCCGGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGc                      <  1:907786/235‑1 (MQ=14)
                                                                                                                                                                                                                    cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGAGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTGGATCCGCGCaaa                        >  1:1187227/1‑237 (MQ=255)
                                                                                                                                                                                                                              aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCCCGCCACTGCACGCAAACGGGAACCGCAAACAGCAAATACGGTGCCGCAATAAAAGGACGATCCGCCCAAAgaaacgcccaga            >  2:389478/1‑228 (MQ=14)
                                                                                                                                                                                                                                gCGGAACCAGAGGTACAGAGCGAGCGGCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCGCGCAAGCGGGAACGGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGc          <  1:389478/239‑1 (MQ=14)
                                                                                                                                                                                                                                    aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGcc      >  1:1237295/1‑238 (MQ=255)
                                                                                                                                                                                                                                         gaagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGAAGCCAGAAGAACAGGTCGATCCGCCAAAAGCCGCCGTCGAAACGGCAATTg  >  1:1124448/1‑238 (MQ=14)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           
CCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCA‑AAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTG  >  NC_000913/1708522‑1708992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A