Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F9 I0 R1 103 124.7 2465218 97.5% 2403587 230.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 630,187 A→G 14.6% G98G (GGA→GGG)  cstA → carbon starvation protein involved in peptide utilization, APC peptide transporter family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913630,1870AG14.6% 379.9 / 7.9 169G98G (GGA→GGG) cstAcarbon starvation protein involved in peptide utilization, APC peptide transporter family protein
Reads supporting (aligned to +/- strand):  ref base A (53/81);  new base G (14/16);  total (71/98)
Fisher's exact test for biased strand distribution p-value = 5.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 169 total aligned reads displayed.

GCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGATCATGGTCATTATCCTTG  >  NC_000913/629951‑630419
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         
gCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGc                                                                                                                                                                                                                                         >  2:399438/1‑239 (MQ=255)
           cATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGCAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCCGGTCCGCtgg                                                                                                                                                                                                                              >  2:1073193/1‑239 (MQ=255)
           cATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACCCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCtgg                                                                                                                                                                                                                              >  2:655630/1‑239 (MQ=255)
            aTTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCtggt                                                                                                                                                                                                                             <  1:190486/239‑1 (MQ=255)
              tGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGCCGCGGATGACGCCAGCGGTGCGCCATAACGCCGGGCTGGACTCTGTGCCGCCGGACAAGCAAGTGCTGTT‑AGGTCACCATTTTCCTGCCAGTGCCGGAGCAGGTGCGCtggtgg                                                                                                                                                                                                                           >  1:340858/1‑239 (MQ=255)
              tGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGGCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCtggtgg                                                                                                                                                                                                                           >  2:1097015/1‑239 (MQ=255)
              tGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACCCGTTTGACGCCAGCGGGGCGCCATAACGCAGGGGTGGAATATGCGCCCACGGACAGGGAAGTGCTGTT‑CGGTCACGATTTTGCGGCACTTGCCGGCGACGGTCCGGtggtgg                                                                                                                                                                                                                           >  1:279480/1‑239 (MQ=255)
                cTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGTGCTGTATATCGCCAAAAATGTGCTGGCGGTGTACCGGTCGCGTATGGGGCCAGCTGTGCGCCCTAACGAAGGGCTGGACGATGTTCCGACGGCAACGAAAATGCTGTT‑CGAGCGCCACTTTGCGGTCATTGCCGGAGCAGGAcctgttggggga                                                                                                                                                                                                                         >  1:818377/1‑229 (MQ=255)
                cTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTTACCCGAAGCGTCTGACGCCCGCGGGGCGCCATAACGACGGGCTGGACTATGGGCCGACGGGCAAGGAAGTGCTTGT‑CGGGCCCGATTTTGCGGCCCTTGCCGGAGCAGGCACGGTGGTgggg                                                                                                                                                                                                                         >  1:519830/1‑239 (MQ=255)
                cTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGGCCCGACGCCGATGAAGCCGACGGAGCGCCAATACGACGGGCTGGGCTATTGGCCGCGGGACAAGGAAGGGCCGTT‑CGGGCGCCACTTTGCGCGCCTTGACGGAGCAGGGCGGGTGgggggg                                                                                                                                                                                                                         >  1:116534/1‑239 (MQ=255)
                 tttAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTgggg                                                                                                                                                                                                                         >  2:254213/1‑238 (MQ=255)
                 tttAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGAAGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGGCGACGGACAAGGAAGGGCTGTT‑TGGTCCCCAGTTTGCTGCCGTTGCCGGGGGAGGTCCGCTGGCGGGGc                                                                                                                                                                                                                        >  1:270300/1‑239 (MQ=255)
                 tttAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCACTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGGCCCGACCCGTATGACCCCCGCGGGGAGCCATAACGCCCGGCCGGACAAAGTGCCGACGGGCAAGAAAGAGCCGTT‑CGGTCACCATTTTGCGGGCCTTGCCGACGCACGGCCGCCGGTgggg                                                                                                                                                                                                                         >  1:544056/1‑238 (MQ=255)
                     aaTCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGGATGAACCCAGCGGTGCGCCATAACGAAGGGCTGGACTATGTGCCGACGGAAAAGAAAGGGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGGGGGGCCggg                                                                                                                                                                                                                    >  2:106696/1‑238 (MQ=255)
                          tGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCCTTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTg                                                                                                                                                                                                                >  2:1009995/1‑238 (MQ=255)
                          tGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGCGCGCCATAACGACGGGCTGGACTATGTGCCGACGGCCAAGAAAGGGCTGGT‑TGGTCACCATTTTGCGGCCATTTCCCGGGCAAGGTCGCCGGGGGGGCCGGGAcctg                                                                                                                                                                                                               >  1:890025/1‑236 (MQ=255)
                          tGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGACCGCGGAGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACCAGAAAGGGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTgg                                                                                                                                                                                                               >  1:386432/1‑239 (MQ=255)
                              gAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTggcgg                                                                                                                                                                                                            <  1:900337/238‑1 (MQ=255)
                                              tgtgGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTg                                                                                                                                                                                          <  2:71572/239‑1 (MQ=255)
                                              tgtgGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGAACCGACCCGTATGACGCCAACGGTGCGCCATCACGATGGGCTGGACCATCTGCCGAAGGCAAAGAAAGGGCTTTT‑CGGGCACCATTTTTCGGCCCTTGCCGGGGCAGGGGCCGTGGGGGGGCCCCTACTGGCAgcgccacaaggcgtcct                                                                                                                                                                                            >  1:255191/1‑225 (MQ=255)
                                              ggtgGAGT‑GTGGTGTCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTg                                                                                                                                                                                          <  1:679811/238‑1 (MQ=255)
                                                tgGATTGGTGGT‑GCGCCGGTCTGAAGCTATCTGAGCGATGACCGTTTTTATGGGCTGTATAGCGCCAAAAATGTGCGGGCGGGTGACCCGACGCGTAGGACGCCAGCGGTGCGCCATAACGACGTGCTGGACTATGTGCCGACGGACAAGAAAGGGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGCCCGGTACTGGCGGCGCAAATGGGC‑TACCTGc                                                                                                                                                                                         <  1:155957/238‑1 (MQ=255)
                                                tgGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCCGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGGGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCCCATGGGC‑CACCTTcc                                                                                                                                                                                        >  1:295121/1‑239 (MQ=255)
                                                     t‑gtgGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGG‑TACCTGCCggggg                                                                                                                                                                                   >  2:638841/1‑238 (MQ=255)
                                                        tggtggCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGGGCTGTT‑CGGTCACCCTTTTGCGGCCATTGCCGGAGCAGGTCCCCTGGTGGGGCCGGTACTGGCGGGGCAAAAAGGC‑CACCCGCCGGGggtg                                                                                                                                                                                 >  1:377444/1‑239 (MQ=255)
                                                         ggtggCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGgatga                                                                                                                                                                                <  2:116534/239‑1 (MQ=255)
                                                           tggCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGG‑TACCGGCCGGGggtgg                                                                                                                                                                                >  2:668876/1‑236 (MQ=255)
                                                                 cGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGgct                                                                                                                                                                         <  2:1040844/238‑1 (MQ=255)
                                                                  ggTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTTCGGCCATTGCCGGGGCAGGGCCGGTGGGGGGGCCGGTCCTGGCGGGGCCAAAGGGG‑CACCTCCCCGGGGTGGGCTgggggg                                                                                                                                                                       >  1:1083407/1‑235 (MQ=255)
                                                                  ggTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGgctg                                                                                                                                                                        >  2:1054279/1‑238 (MQ=255)
                                                                  ggTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCCACGCGTCTGACGCCAGCGGTGCGCCATACCGACGGGCTGGACTATTTGCCGACGGGCGAGAAAGGGGTGGT‑CCGTCACCCTTTTGCGGCCCTTGCCGGGGCAGGTCCGCGGGGGGGGGCGGTGCTGGCGGGGCGAAGGGGC‑GGCCCGCCggggggggcgtgggggg                                                                                                                                                                       >  1:664213/1‑226 (MQ=255)
                                                                                  aTCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATTACCCCAGCCGGGCGCCATAACGACGGGCTGGGCTTTGGGCCGACGGGCAAGCAAGTGCTGTT‑CCGGCCCCATTTTGCCGCCATTCCCCGGGCCGGGCCGCCGGGGGGGCCGGTGCTGGCGGCGCAACATGGC‑CCCCTGCCGGGGGGGATTCTTCTGCACGCCGGGGGGGTtc                                                                                                                                                        >  1:1215065/1‑238 (MQ=255)
                                                                                  aTCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGGTGATCTGGCTGCTCGCTGGGGTGGTtc                                                                                                                                                        >  2:374646/1‑238 (MQ=255)
                                                                                  aTCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCCACGCGTATGACGCCAGCGGGGCGCCCTAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGGGCTGTT‑CGGTCACCATTTTTCGGCCATTGCCGGAGCAGGTCCGCCGGTGGGGGCGGTACTGGCGGGGCAAAAGGGCGTACC‑GCCGGGGGAGGTCTGGGTGCGCGCCGGGGGGGGtc                                                                                                                                                        >  1:471967/1‑238 (MQ=255)
                                                                                    cGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTtctc                                                                                                                                                      >  2:139742/1‑238 (MQ=255)
                                                                                          ccttttttATGGGCTTGAGATCGCCAAAAATGTGCTCGCGGTTGACCAGACGCGTATGACGCGAGCGGTGCTCCATATCGACGGGCTTGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGTCGGCGCAAATGGGC‑TACCGGCCGGGGTTGATCTGGCTGTGCGCTTGGGTGGTTCTCGCcggtg                                                                                                                                               <  1:100473/236‑1 (MQ=255)
                                                                                          ccGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCcggtg                                                                                                                                               <  1:399438/239‑1 (MQ=255)
                                                                                          acGTTTTTATGGGCTGTATATGGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCcggtg                                                                                                                                               <  1:940837/238‑1 (MQ=255)
                                                                                               tttATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCcggtgcggtg                                                                                                                                          <  2:316616/239‑1 (MQ=255)
                                                                                                 tATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCa                                                                                                                                        <  1:611123/239‑1 (MQ=255)
                                                                                                 tATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCa                                                                                                                                        <  1:407408/239‑1 (MQ=255)
                                                                                                     ggCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGTACTAGGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGa                                                                                                                                     <  2:549326/238‑1 (MQ=255)
                                                                                                     ggCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGa                                                                                                                                     <  1:494231/238‑1 (MQ=255)
                                                                                                     ggCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCCACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGTCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGAt                                                                                                                                    >  2:625229/1‑239 (MQ=255)
                                                                                                          tataTCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGGACTGGCGGGGCAAATGGGG‑TACCTGCCGGGGGTGGTCTGGCTGCTCGCTGGGGGGGTTCTGGCCGGTGGGGTGCAGGGTTTCAt                                                                                                                               >  1:714674/1‑239 (MQ=255)
                                                                                                           atatCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTGTGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCAt                                                                                                                               <  1:838933/238‑1 (MQ=255)
                                                                                                              tCGCCAAAAATGTGCTGGCGTTTGACCCTACGCGTATGACGCCAGCGGTGGGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTg                                                                                                                           <  1:398253/239‑1 (MQ=255)
                                                                                                              tCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTg                                                                                                                           <  1:785838/239‑1 (MQ=255)
                                                                                                              tCGCCAAAAAGGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTg                                                                                                                           <  2:664213/239‑1 (MQ=255)
                                                                                                                gCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCCAATGGGC‑TACCTTCCGGGGATGGTCCGGCTGCTCGCTGGGGGGGGTTTCGCCGGGGGGGGGGAGGGTTTCCTGGTggt                                                                                                                         >  2:814377/1‑237 (MQ=255)
                                                                                                                    aaaaTGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGGGCAGGGGTTCCTGGTGCtggtt                                                                                                                     >  2:949994/1‑239 (MQ=255)
                                                                                                                         gtgCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGGTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCCGTACTGGCGGCCCAAAAGGGC‑TCACTGCCGGGGGAGATCTGGCTGCTCGCCGGGGGGGGTATCGCCGGGGGGGGGGAGGGTTTCATGGTGCtgttttgt                                                                                                                  >  1:1197126/1‑234 (MQ=255)
                                                                                                                          tgCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAAAGGGC‑CACCTGCCGGGGGTGATCTGGCTGGTCGCTGGGGGGGTTCTCGCCGGGGCGGGGCAGGGTTTTCTGGGGGTgtttgttt                                                                                                                 >  1:551960/1‑237 (MQ=255)
                                                                                                                           gCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCt                                                                                                               <  2:270300/238‑1 (MQ=255)
                                                                                                                            cTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTa                                                                                                              <  2:115080/238‑1 (MQ=255)
                                                                                                                             tGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTAcg                                                                                                            <  2:146656/239‑1 (MQ=255)
                                                                                                                                         cGACGCGTATGACGCCGGCGGGGCGCCATAACGACGGGCTGGACGATGTGCCGACGGACAAGAAAGTGCTGTG‑CGGTCACCATTTTGCGGCCATTGCCGGGGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGATTGTTTCTACGCGCCGTGACGGt                                                                                                <  1:564378/239‑1 (MQ=255)
                                                                                                                                         cGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGt                                                                                                <  2:322467/239‑1 (MQ=255)
                                                                                                                                               gTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGtcgctcg                                                                                          <  2:381319/239‑1 (MQ=255)
                                                                                                                                                        cAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCCCCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAg                                                                                 <  2:544056/239‑1 (MQ=255)
                                                                                                                                                        cAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAg                                                                                 <  2:432570/239‑1 (MQ=255)
                                                                                                                                                          gCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGGTGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGGTTTCATGGGGCTGTTTGTTTCTACGCGCCGGGACGGTCGCTCGCggggggg                                                                                  >  1:793344/1‑233 (MQ=255)
                                                                                                                                                           cGGTGTGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGTTGGGGCCGGTACTGGCGGCGCAACTGGGC‑CACCTGCCGCGGCTGGTCCGGCTGCTCGCTGGGGTGGTTCTCGCCGGTCCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCCTGACGGTCGCTCGCCGGGGGAGCTg                                                                              >  1:159116/1‑239 (MQ=255)
                                                                                                                                                           cGGTGCGCCATAACGACGGGCTGGACTATGGGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGGTCTGGCTGCTCGCCGGGGGGGTTCTCGCCGGTGGGGTGCGGGATTTCATGGTGCTGTTTGTTTCTAAGCGCCGTGACTGTCGCTCGCTGGGGGAGcgg                                                                              >  1:1135809/1‑237 (MQ=255)
                                                                                                                                                              tGCGCCATAACGACGGGCTGGACTATGGGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGt                                                                            <  2:1135809/238‑1 (MQ=255)
                                                                                                                                                              tGCGCCATAACGACGGGCTGGACGATGGGCCGACGGACAGGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGt                                                                            <  1:1009995/238‑1 (MQ=255)
                                                                                                                                                               gcgcCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCa                                                                          <  2:858192/239‑1 (MQ=255)
                                                                                                                                                                cgcCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCa                                                                          <  2:194679/238‑1 (MQ=255)
                                                                                                                                                                   cATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAaag                                                                       <  2:120760/238‑1 (MQ=255)
                                                                                                                                                                           cgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATgg                                                              >  2:858535/1‑239 (MQ=255)
                                                                                                                                                                                tGGACTATGGGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGGGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGcc                                                          <  1:958241/238‑1 (MQ=255)
                                                                                                                                                                                gggtcTAGGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCGGGGGCAGGTCCGCTGGTGGGGCGGGTACTGGGGGCGCAAATGGGC‑TCCCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGcc                                                          <  1:295407/234‑1 (MQ=255)
                                                                                                                                                                                     tATGTGCCGACGGACAAGAAAGTGCGGTT‑CGGTTACCTTTTTGCGGCCATTGCCGGGGCAGGTCCGCTGGGGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAAccgc                                                    <  2:725807/239‑1 (MQ=255)
                                                                                                                                                                                        gtgCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGGGCCAATGGGC‑CCCCTTCCGGGGAGGATCTGGGCGCCCGCTGGGGTGGGTCTCGCCGGTGCGGGGCCGGGTTTCCTGGTGCTGTTTGTTTTTACGAGCCGTGACGGTGGCCCCCTGGGGGGGCTGGTGACAGAAGAGCTGGGGACAAcccccgc                                                 >  1:1099615/1‑238 (MQ=255)
                                                                                                                                                                                            cGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTg                                             >  2:876848/1‑239 (MQ=255)
                                                                                                                                                                                                 tgcAAGGAAGTG‑TGTTACGGTCCCCTTTTTGCGGTCTTGGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTg                                         <  1:1226913/236‑1 (MQ=255)
                                                                                                                                                                                                    aaGAAAGGGCTGTT‑GGGTCACCATTTGGGGGCCAGTGCCGGAGCAGGCCCGCTGGGGGGGCCGGTACTGGCGGGGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCTCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTCCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTgcgc                                      <  1:560562/238‑1 (MQ=255)
                                                                                                                                                                                                          tttgtgtg‑CGGTCCACTTTTTGCGGCATTTGCCGGGGAAGGTCCGCTGGTGGGGCGGGTACTGGAGGCGCAAATGGGT‑TACCGGCGGGGGATGATGCGTCTGCTCGTTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTTGGTGAGCGGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  1:535720/235‑1 (MQ=255)
                                                                                                                                                                                                           tGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCtggggg                                >  1:766662/1‑237 (MQ=255)
                                                                                                                                                                                                            ggtggtcgggTCACCATTTTGCGGGCATTGCGGGGGAGGGTCCGGTGGTGGGGCCGGTACTGGCGGGGCAAATGGGC‑TACCGGCCGGGGATGATGTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  1:1073193/230‑1 (MQ=255)
                                                                                                                                                                                                            gCTTTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:471967/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCCCCTTTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACGGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:151373/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGGGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:334763/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:1210349/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:519830/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:743435/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  1:139742/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:377444/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:386432/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTT‑CGGTCACAATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGc                               <  2:504072/237‑1 (MQ=255)
                                                                                                                                                                                                            gCTGTG‑CGGTCACCATTTTGCGGCCATTGCCGGGGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGcc                              <  1:716575/238‑1 (MQ=255)
                                                                                                                                                                                                                  ccggtaccctttttGAGGCCATTGCCGTGGCAGGTCCGCTGGGGGGGCGGGTGCTGGCGGCGCAAATGGGC‑TCCCTGCCGGGGATGATCTGGCTGCTCGTTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTTGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCttt                        <  1:483772/229‑1 (MQ=255)
                                                                                                                                                                                                                      tCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGa                    >  1:188037/1‑239 (MQ=255)
                                                                                                                                                                                                                      tCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGa                    >  2:1224554/1‑239 (MQ=255)
                                                                                                                                                                                                                        aCCATTTTGCGGCCATTGCGGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TCCCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGATc                  <  2:55570/239‑1 (MQ=255)
                                                                                                                                                                                                                         cctttttGCGGCCATGGCCGGAGCGGGTCGGCTGGTGGGGCGGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGATCa                 <  1:638841/236‑1 (MQ=255)
                                                                                                                                                                                                                         ccATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGAAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGATCa                 <  2:463249/239‑1 (MQ=255)
                                                                                                                                                                                                                          cATTTTGCGGCCTTTGGCGGAGCAGGGCCGCGGGGGGGGCCGGTACTGGCGGGGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGATCAt                <  1:374646/239‑1 (MQ=255)
                                                                                                                                                                                                                                    ccATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGt                                                                                                >  2:402099/1‑149 (MQ=255)
                                                                                                                                                                                                                                        tGCCGGAGCGGGCCCGGTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCGGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGATCATGGTCATTATCCTTg  <  1:1051140/239‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         
GCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATT‑GTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTT‑CGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC‑TACCTGCCGGGGATGATCTGGCTGCTCGCTGGGGTGGTTCTCGCCGGTGCGGTGCAGGATTTCATGGTGCTGTTTGTTTCTACGCGCCGTGACGGTCGCTCGCTGGGTGAGCTGGTCAAAGAAGAGATGGGGCCAACCGCCGGGGTGATTGCGCTGGTGGCCTGCTTTATGATCATGGTCATTATCCTTG  >  NC_000913/629951‑630419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A