Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F27 I0 R1
|
83 |
86.1 |
2053078 |
89.1% |
1829292 |
215.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
540,546 |
C→T |
12.1% |
intergenic (+38/‑19) |
allB → / → ybbY |
allantoinase/putative uracil/xanthine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 540,546 | 0 | C | T | 12.1%
| 168.8
/ 3.3
| 73 | intergenic (+38/‑19) | allB/ybbY | allantoinase/putative uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base C (17/45); new base T (6/3); total (24/49) |
| Fisher's exact test for biased strand distribution p-value = 5.00e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTCGTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGG > NC_000913/540308‑540778
|
ttCGTTTTCCTTTAGCCGAATAGCAGGGTTGTTCTTACCAATGCCTATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCAGACCAGTGGCGTGCGTATCACGAAAACCATCTTGCGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑Ttc < 1:320190/239‑1 (MQ=255)
ttCGTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑Ttc < 2:287940/239‑1 (MQ=255)
ttCGGCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAAGTACGATCTGGAATAGCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAATCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑Ttc < 2:483997/239‑1 (MQ=255)
tattcaGCCGAATAGCAGTTATGTTCTTACCAATTACGATCTGGAATATCGCCACAAAGACAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTa < 1:353385/238‑1 (MQ=255)
cattccCCCGAATAGCAGCTTTGTTCTTACCAAGGCCGTTCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTa < 1:121293/239‑1 (MQ=255)
cattcaGCGGAATGGCAGCTTTTTTCTTACCAATGGCGATCGGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCCTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTa < 2:1025519/239‑1 (MQ=255)
cattcaGCCGAATAGCCCCTATGTCTGTCCGAATGTCTGTCTGGAATATCGCCACAAAGTCATGCCTTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTa < 1:676556/239‑1 (MQ=255)
cattcaGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTa < 2:173022/239‑1 (MQ=255)
cattcaGCCGAAATACACTTATGTTCTTACCAATGCCGATCTGGAATATCGCCACAAAGTCAGCCCGGAGGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTa < 1:877885/239‑1 (MQ=255)
ttcaGCCGAATAGCAGCTATGTTCTTCCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAg < 2:634566/239‑1 (MQ=255)
tcaGCCGAATAGCAGCTAGGTTCTTTCCAAGGACGATCTGGAATATCGCCAAAAAGGCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAgg < 2:854905/239‑1 (MQ=255)
caGCCGAATAGCAGCTATGTTCCTACCAATGACGATCTGGAATATCCCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGgt < 2:572210/239‑1 (MQ=255)
tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGCAAGGCCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCC‑TTTTCC‑GGTTTAAGTGG‑GTTTTTGTTCCAtttttgcgttcgcg > 2:834427/1‑228 (MQ=255)
tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGGGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGACGTAATCTGGGCCCTGCCATGCCCGTCCTTGCGGCGGGGATTTTTCC‑GATAAAGGGGG‑TTTTTTTTTCATTTTTGCAggagccg > 1:809357/1‑233 (MQ=255)
gcctatgggAATATCGGCCATAATTCAGGCCGTATGTTTGGCGTACCATTGGGGAGCGTATCACGAAAGCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCATTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCcgc‑g < 1:128007/232‑1 (MQ=255)
gATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑Gaa < 2:448170/239‑1 (MQ=255)
aTCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGC‑TTTTCC‑GGGTTAGGGGG‑GTTTATTTTGAATTTTTCAGCTA‑GCCCC‑Gaaa > 2:31975/1‑239 (MQ=255)
cTGGAATATCGCCAAAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGc < 2:967691/239‑1 (MQ=255)
agcGCCACAAATTCATCCCGTATGTTTGCCGTACCATTGGCGCGCGTAACACGAAAACCATCTTACGGGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAAGCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTAt < 2:809357/237‑1 (MQ=255)
cGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCCGGCCCCTGCAATGCCCGTCCTTGCGGCGGACA‑ATATCC‑CGGTCAGGGGG‑GTTTATGTTAAATTTTTTAAGCA‑TCCGC‑GGAAGccctgtttca > 1:562041/1‑231 (MQ=255)
aaGTCAGCCCGTTTGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTc < 2:281732/239‑1 (MQ=255)
gCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGAGG‑GTTTGTGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTTTCA‑GGGTTTCatgggg > 2:397691/1‑234 (MQ=255)
cccGTATGTTGGCCGTACCATTGGCGCGGGTTTCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGCCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGTCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGtt < 2:809444/239‑1 (MQ=255)
tATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATC‑TACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCTGACA‑TTCTCC‑GGTTAAGGGGTGGTTTAT‑TTCAATTTTTCAGTCA‑GCCGC‑GAAAACCCGTTATTA‑GGATTTCATGGGTTTTTCt > 2:504444/1‑239 (MQ=255)
aTGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTTCGGCGGGCA‑TTCTCC‑GGTTTAGGGGG‑GTTTTTGTTTCATTTTTCAGTCA‑GCCCC‑CCAAACCTGTTTTTA‑GGAGTTTAGTGGgtttttt > 1:591378/1‑237 (MQ=255)
ggcctttccctttGGCGGGCG‑ACCACGAAAACCCGCTTACGGGGTGATGTTATTTACGACATTTAACCGGGCTTCCATGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTAtt < 1:808662/228‑1 (MQ=255)
gTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTAttttt < 2:228955/238‑1 (MQ=255)
ttGGCGCGCGTTGCACGAAAACCATCTTACGTGGTGATGTGATTTACGGCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAaca < 2:452637/239‑1 (MQ=255)
ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCC‑TTTTCCGGGTTAAGG‑GG‑GCTTTTGTTTCATTTTTCGGTCA‑GCCCG‑GAAAACAGGTTATTA‑GGGGTTTCGAGGGTTTTTTTTTTTTTTTGctaaa > 1:228955/1‑235 (MQ=255)
ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCC‑ATCTTC‑CGGTAAGGTGT‑GTTTTTGTTCCATTTTTCCGTGC‑GCCGC‑GAAAGCCCGGTTTCAGGGTTTTGAGGGGTttttttttttttttgacaaa > 1:377637/1‑233 (MQ=255)
ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAaca < 2:562041/239‑1 (MQ=255)
tGGCGCGCGTTTCACTAAAACCATCTTACGTGGGGAGTTGATTTACCACAGTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGGTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAacac < 1:407283/239‑1 (MQ=255)
gcgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCaa < 2:752731/230‑1 (MQ=255)
ttcgcGAAAGCCATCTTACGTGGTTATTTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGt < 2:717188/234‑1 (MQ=255)
aaaaCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGGTAAGGTGT‑GTTTATGTTTCATTTTTCTGTCA‑GCCGC‑CAAAACCTGTTTTCA‑GGGTTTTAGTGGGTTTTTTTTTTTTTTTGCAACAAGGGTGTgggtggttct > 1:752731/1‑231 (MQ=255)
aTCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGG‑GGTTTTGTTTAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGGTTTCAGTGGTTTTTTTTTTTTTTTTTTAACACCGTTTTGGTTTCCCCTAcccca > 2:500929/1‑235 (MQ=255)
ggtgtgatgttatTTCACACATTGAACGGGGCTTCCCTGTTGCGCCGAAAGTTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTg < 1:31975/236‑1 (MQ=255)
atgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGGGT‑GTTTATGTTCAATTTTGCGGTCA‑GCCGC‑GAAAGCCTGTTTTCA‑GGATTTCACGGGGTTTTCTTTATTTTTTTGAACACGGTTGTGGTTCTTCCTACCCGACTTTTTGCttttt > 2:108902/1‑238 (MQ=255)
gtatttacactgtggaaacgggCTTCCCTGTTGCGCCGAAAGGTCAATTTAGCCTTAAACACAAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGt < 1:39206/220‑1 (MQ=255)
tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGGTTTTCTTTATTTTTTTCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGcc > 2:999791/1‑238 (MQ=255)
ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg < 2:346120/208‑1 (MQ=255)
taccaggctttCCCGGTTGCCCCGAAAGGTCAATTTTTCCTTAAACCTCCGCAGTAATCTGGCCCATGCAATGCCCGTCCTTGCGGCGGGCA‑TTGTCC‑GGTTAATGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:1023516/230‑1 (MQ=255)
taacctgggttCCCTTGTGGGCCGAAAGGTCAATTTTTCCTTAAACATCAGCAGTAATCTGGCCTCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:500929/230‑1 (MQ=255)
gCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGGGT‑GTTTTTGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACCCTACTTTTTGCTTTTCAGTTGCCGCAAAGTAGCCTGCtt > 2:471421/1‑238 (MQ=255)
gCTTCCCTGTTGCGCAGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCt < 2:899792/237‑1 (MQ=255)
ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACCTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc < 2:194568/239‑1 (MQ=255)
cttttggtcatgaaagtgaaTTTTGCCTTCAACATCAGCAGTAATGTGGCCCCGGCCATGCCCGTCCGTGCGGCTGGCA‑TTCGCG‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCC‑GCCGC‑GAAAGCCTGTTAGCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGGTGTGGTTCCTCCTACGCTACTTTCTTCTTTTCAGTTGCCGCAAAGTAGGCTGCTTACGCTCa < 1:916032/221‑1 (MQ=255)
ccccaaaGGTCTTTTTTTCTTTAAACATCAGCAGTAATCTGGCCCGTGCAATGCCCGTCCGTTCGGCGGCCC‑TTTCAC‑GGGTGAGGAGG‑GGTTAGGTTACATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCCACGCTGCTTTCTGCTTTTCAGTTGCCGCAAAGTAGCTTGCTTACGCTCACGCAata < 1:504444/235‑1 (MQ=255)
cAAATTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGGCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCt < 2:26583/238‑1 (MQ=255)
ttATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTa < 2:591378/239‑1 (MQ=255)
cTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCa < 2:505970/217‑1 (MQ=255)
cTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa < 2:540941/239‑1 (MQ=255)
aaCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑Ttctc > 2:893793/1‑54 (MQ=255)
aaCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑Ttctc < 1:893793/54‑1 (MQ=255)
aaCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGGGT‑GTTTTTGTTCAATTTTGCAGTCA‑GCCGC‑GGAAGCCTGTTTTCA‑GGATTTCAGTGGTTTTTTTTTATTTTTTGCCACACGGTTTTGGTTCCTCCTACGCTACTTTTTTCTTTTCCGTTTCCCCCAAAGAACCCGCTTACCCTCCCGCCAAATGCCTTTTTTTCTccccccccgg > 1:253071/1‑232 (MQ=255)
aTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCt < 2:290117/222‑1 (MQ=255)
cagcagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTTTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGGTTTTCTTTTTTTTTTTCAACACGGTTGTGGGTTCTCCTACCCTACTTTCTGCTTTTTAGTTGTCGCAAAGATGCCTGCTTTCTCTCACGCAATATGCTTTTTTTTCTTCCGCACTGGCCt > 2:67718/1‑237 (MQ=255)
tAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGgt < 1:365818/53‑1 (MQ=255)
tAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGgt > 2:365818/1‑53 (MQ=255)
aaTCTGGCCCCTGACATTCCCTTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTc < 2:184135/239‑1 (MQ=255)
aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTTAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGc > 2:660662/1‑87 (MQ=255)
aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGc < 1:660662/87‑1 (MQ=255)
aTCTGGCCCCTGAAATGCCCGTCCGTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCa < 2:830714/196‑1 (MQ=255)
gCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTTTCC‑GGTTAAGGGGT‑GGTTTTGGTCAATTTTGCAGTTA‑GCCGCGGAAAGCC‑GTTATCA‑GGGTTTTAGTGGTTTTTTTTTTTTTTTTTGTACACCGGGTTTGTTTCTCCCACCCGCCTTTATCCTTTTTCGTTGGCCCAAAGTAGGCCGCTTTCGCTCACGCCAAATCTGTTTTTTTTCACCCCACCGGCCTGCTTCCCCCAGGGGt > 1:772325/1‑239 (MQ=255)
gCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCCATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGtt > 2:285115/1‑130 (MQ=255)
gCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAac < 2:582755/124‑1 (MQ=255)
gCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGtt < 1:285115/130‑1 (MQ=255)
tGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTTTCA‑GGGTTTCAGTGGTTTTTCTTTTTTTTTTTCAACACGGTTGTGGTTCCTCCTACGCTCCTTTTTGCTTTTTAGTTTCCGCCAAGTAGCCTGCTTACGCTCACGCCATATTCTTTTTTTTTTACCCCCCTGGCCTCCTTCGCTCAGGGGTGTTgg > 1:1018101/1‑238 (MQ=255)
gCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCa < 2:806870/93‑1 (MQ=255)
tGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGGTTAGGTGT‑GTTTATGTTCAATTTTGCCGTCA‑GCCGC‑GAAAGCCTGGTATTA‑GGGTTTCCGTGGTTTTTTTTTATTTTTTTCAACACGGTTGTgg > 1:582755/1‑124 (MQ=255)
ttcTTGCGGCGGTCA‑TTTTCC‑GGTTAAGGTTT‑GTTTATGTTCAATTTTGCCGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 2:901329/237‑1 (MQ=255)
tCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 2:1018101/239‑1 (MQ=255)
ttttGGGGGGGGCT‑TTC‑CC‑GGTTTAGTTGT‑GTTTTTGTTCAATTTTGC‑GTGAGGCCGC‑GAAAGCCTGTTTTCA‑GGATTTCAGTTGTTTTTCTTTATTTTTTGCAACCCGGTTGGGGTTCCTCTTACGCTACTTTCTGCTTTTCAGTGGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:999791/237‑1 (MQ=255)
ccTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGGGT‑TTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACTGTTGTGGTTCCTCCTACTCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 2:138527/238‑1 (MQ=255)
cTTGCGGCGGGCA‑TTTGCC‑TGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 2:272999/239‑1 (MQ=255)
cTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 2:377637/239‑1 (MQ=255)
ggCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTTCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTTCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCCCTGGCCTGCTTCGCTCAGGCGTTTTGCGGTTATCGTCCCGCtattattg > 2:510437/1‑237 (MQ=255)
ggCA‑TTCTCC‑GGTTAAGGGGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTTGCCTGCTTCGCTCAGGCGTTTTTCGGGCATCTTCGCGCcatttttg > 2:695521/1‑235 (MQ=255)
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TTCGTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCA‑TTCTCC‑GGTTAAGGTGT‑GTTTATGTTCAATTTTGCAGTCA‑GCCGC‑GAAAGCCTGTTATCA‑GGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGG > NC_000913/540308‑540778
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
