Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I0 R1 92 125.0 2504412 98.2% 2459332 226.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,151,689 G→T 30.3% intergenic (+43/+22) yegJ → / ← yegK uncharacterized protein/ser/thr phosphatase‑related protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,151,6890GT30.3% 37.2 / 6.2 39intergenic (+43/+22)yegJ/yegKuncharacterized protein/ser/thr phosphatase‑related protein
Reads supporting (aligned to +/- strand):  ref base G (15/11);  new base T (7/5);  total (22/17)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-01

AAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTC‑AGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT  >  NC_000913/2151484‑2151924
                                                                                                                                                                                                                   |                                                                                                                                                                                                                                            
aaactgagaagaGGGCAAGGGGGGAAAAAAAAAAAAAGAAATTTTTTC‑AGACGGGATGTATACGCGGGGGAAAAAAATTTACGGCGGTTATCCCTTTGATCTTTTATGGCC‑CCCCTACCAAAAAGAAGACG‑CCGAGGAGCTAAGAGCAAAATTAGTTCGTTAATCACCTGTTATATTTATTTTTAAAACGGGCGGTGG‑AT‑T‑TGTTG‑TCTACAACCGCCATGAGAAACTCACTCTGCCca                                                                                                                                                                                                            <  2:354739/233‑1 (MQ=255)
 agagaaaaagagggCAAGGAG‑GGAAAAAAAAAAAAAGAGGTATTTCAAGATGGGTTGTATGGGCGGGGGAAAAAAATTTCGGGGGGTAAAACAATTAATCTTTTATTGG‑‑CCCCTTACCAAAAAAAAAAGCCCGAGGCGTTAAGAGAAAAATTATTTCTCAAACCAGCTTTTTTTTTTTTTTTTTAAGCGGGGGGTTG‑AT‑T‑TTTTT‑TCTACAACCGCCATGAGAAACTCACTCTGCCcac                                                                                                                                                                                                           <  2:153390/227‑1 (MQ=255)
              gcaagaaGTGAAAAATCAAGAAAGAAAAATTTTC‑AAACTGATTGTATCGGCGGGGGAATAAAATTTACGGCGTTTATACCTTTGATCCTTTATTGGT‑CACTTATCAAAAAGAAGAAG‑CGGACGAGCAAAGACAAAAATTAGTTCGCTAATCGGCCGTTATTTTTTTTGTTAAACCTGGCGGTTA‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGcc                                                                                                                                                                                               <  1:329321/232‑1 (MQ=255)
                                aaaaagaaGATTTTGA‑AGAGGGGATGTATACCGGAGGGAATAAATTTTACGGCGGTTACA‑CTGTGATGCTTTTTTTGTCCACTTACCAAAAAGAAGAAG‑CCGACGAGCAAAGAGAAAAATTTGTTCGGAAATCAGCTTTTATTTTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCg                                                                                                                                                                            <  2:864813/237‑1 (MQ=255)
                                                        aTGTATACGCGCGGGGAAAAATTTTACGGCGTTTATCCCATTGTTCTTTTATTGTT‑CACTTACCAAAAAAAAGAAG‑CCGACGAGCAAAGAGAAAAATTGGTTCGATACTCACCCTTTAT‑TTTTTTTTTTAAACCGGGCGTTG‑AATT‑TTTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTg                                                                                                                                                     <  1:1012976/239‑1 (MQ=255)
                                                                                     cgtttATACATTTGATCTTTTATTGTT‑ACCCTATCAAAAAGAAAAAG‑CCGACAAATAAAGAAAAAAATAAGTCCGTTAACCACCCTTTATATTTATTGTTTAAAGTGGCGTTTA‑AT‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGta                                                                                                                         <  1:567816/235‑1 (MQ=255)
                                                                                          cacctaTTGATCTTTTTGTGGT‑CACCTAACAAAAAAAAGAAC‑CCGAGGAGAAAAGAGAAAAATTATTTCGCTAATCACCCGTTATATTTATTTTTAAAACTGGGGGTTG‑AT‑T‑TTTTG‑TCTACAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAt                                                                                                                   <  2:704895/234‑1 (MQ=255)
                                                                                                 tGATCCTTTATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTT‑TCTTCAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATTCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAgttg                                                                                                            >  1:905530/1‑239 (MQ=255)
                                                                                                     ccTTTATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTT‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGGGGCAACGGTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGGCAAAAAATGCTTTAACAATTTAGGTAATAAATCGAgttgtt                                                                                                          >  1:357542/1‑237 (MQ=255)
                                                                                                        ttATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TTTTT‑TCTTCAAACGCCCTGAGAAACTCACTCTTCCCACAGCCCCCGTGCCAACGTTTTTTCATCATCCGTACGCCCGTTTACCGCCCGGGTGGGCAAAAAATGCTTTAAAAATTCAAGGAATAAAACGAGTTTTTTCTGc                                                                                                     >  2:1032691/1‑239 (MQ=255)
                                                                                                        ttATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTT‑TCTTCAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGGCAACGTTTTATCATCATCCCTACGCTCGTTTACCGCCGTGCTGGACAAAAACTTCTTTAACAATTCAGGTCATAAATCGCACTGTTCCTGc                                                                                                     >  1:713692/1‑239 (MQ=255)
                                                                                                        ttATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCCTGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCCCCCGGCGGGACAAAAAATGGTTTAACAAATCAGGGAATAAATCGAGTTGTTTCTGc                                                                                                     >  2:580730/1‑239 (MQ=255)
                                                                                                        ttATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCCCGTTTACCGCCGGGCTGGGCAAAAACTGCTTTTAAAATTCAGGTAATAAATCGAgttgttt                                                                                                         >  1:704895/1‑234 (MQ=255)
                                                                                                              gT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TTTTT‑TTTTCAACCGCCCTGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATTATCATCCGTACGCTCGTTTACCGCCGGGGTCGGCAAAAACTGCTTTAACACTTCAGGTAATAAATCGAGGTGTTCCTGCGGtgct                                                                                               >  2:115312/1‑239 (MQ=255)
                                                                                                               t‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TTTTG‑TCTTCAACCGCCATGAGAAAATCACTCTTCCCCCCACGCCCGTGCCCACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCGGGACAAAAAATTCTTTAACAATTTAGGGAATAAAACGAGTTTTTcccttgtttgt                                                                                               >  2:1095142/1‑229 (MQ=255)
                                                                                                               t‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTTAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCCAAGTTTTATCATCATCCGTACGCTCGTTTACCGCCggg                                                                                                                                                        >  1:811592/1‑181 (MQ=255)
                                                                                                                       tCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTT‑TCTTCAAACGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGGCAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAg                                                                                       >  1:198423/1‑239 (MQ=255)
                                                                                                                              gaagaag‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TTTTG‑TCTTCAACCCCCATGAGAAACTCACTCTGCCCACAGCGCCAGGGCCAACGTTTTATCATCATCCCTACGCTCGTTTACCGCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTTCTGCCGCCAGTCCAttt                                                                                >  2:1065740/1‑238 (MQ=255)
                                                                                                                              gaagaag‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGCTTTACCATCATCCGTACGCCCGTTTACCGCCGGGCTGGACAAAAACTGCTTTTACAATTCAGGTAATAAAACGAATTGTTCCTTCGTTGCTGCCGCCCGTCCATTg                                                                                >  2:1037787/1‑239 (MQ=255)
                                                                                                                                 gaag‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGGTG‑TCTTTAACCGCCATGAGAAACTCACTCTGCCCCCAACGCCAGTGCCAACGTTTTTTCATCATCCGTACCCTCGCTTACCGCCCGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATACATCGAGATGTTCCTCCGGTGCTGCCGCCAGTCCATTTaaa                                                                             >  2:612598/1‑239 (MQ=255)
                                                                                                                                    g‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAAACGCCATGAGAAAATCAATCTTCCCACAACCCCCATGCCCACGGTTTATCATCATCCGCACGCCCGTTTACCCGCGGGGTGGGCAAAAACCGCTTTTACCAATCAGGTAATAAATTTAGTTGTTCCTGCGTTTCTTCCGCCACTCCCTTTaaaaaa                                                                          >  2:876101/1‑238 (MQ=255)
                                                                                                                                      ccGACGAGCAAAGAGAAAAATTATCTCGCTAACCAGCCGTTATTTTTTTTTTTTAAACGGGCGGTTA‑AT‑T‑TGTTT‑TCTTCACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaaa                                                                           <  1:447540/237‑1 (MQ=255)
                                                                                                                                      cagacgaGTAAAGAAAAAAATTATTGCGAAAATCACCGTTTATATTT‑TTTTTTAAACGGGGGGTTGAAA‑T‑TTTTG‑TCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaaa                                                                           <  1:92576/235‑1 (MQ=255)
                                                                                                                                                      aaatTTAGTGCCTTACTCAGCTTTTATATTTATTTTTAAAACTGGCGGTTG‑AT‑T‑TTTTG‑CCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGcac                                                         <  1:1065740/239‑1 (MQ=255)
                                                                                                                                                      aaaaTTAGTTCGATAACCAGCCTTTATATTTATTGTTAAACCTGCCGTTTG‑AA‑T‑TTTTG‑TCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGcac                                                         <  1:46992/239‑1 (MQ=255)
                                                                                                                                                        aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTTCCCACAACGCCAGTGCCAACGTTTTATTATCATCCGTACGCTCGTTTAACCCCGGGCTGGACAAAAAATGCTTTAACAATTTAGGTAATAAAACGAGTTGTTCCTGCGTTGCTGCCGCCATTCCATTTAAAAACGGGGTAAAGAAAGGCACAt                                                       >  1:1045124/1‑239 (MQ=255)
                                                                                                                                                          ttATTTCGATAATCGGCTGTT‑TTTTTTTTTTTTAAACGGGGGTTTG‑AA‑TGTGTT‑‑TTTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag                                                    <  1:868818/239‑1 (MQ=255)
                                                                                                                                                           ttgTTCACTAATCACCCGTTATATTTTTTTGTAAACCGGGGGGTTA‑AT‑T‑TTTTG‑TCTCAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag                                                    <  1:454062/237‑1 (MQ=255)
                                                                                                                                                                ctctagcacgctgTTATTTTTTTTG‑TTAAACCGGGGGTTGAAA‑T‑TGTGT‑TCTCAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGaa                                               <  2:1209881/227‑1 (MQ=255)
                                                                                                                                                                     cacAGCCTTTGTTTTTA‑TGTTTAAACCGGGGGTTT‑AATT‑TTTTT‑TCTCAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATc                                          <  1:106962/237‑1 (MQ=255)
                                                                                                                                                                               atatTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TTTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGGTTTATCATCATCCGTACGCTCGTTTACCGCCCGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATAGAGATGTTTCTGCGTTGGTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATACAGCTAAttt                                >  1:327788/1‑239 (MQ=255)
                                                                                                                                                                                    tattGTTTAAACTGGCGGTTT‑AA‑T‑TTTTT‑TCTTCAACCGCCATGAGAAAATCACTCTTCCCCCAGCGCCAGTGCCAACGTTTTATTATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCCGGTAATAAATCGAGTTGTTTCTGCGTTTGTGGCGCCAGTCCCTTGAAAAAAGGGGGAAAGAAAGGGACATGAGGGGAATTATACAGCAAATTTTACg                            >  2:103514/1‑238 (MQ=255)
                                                                                                                                                                                     attGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTTCCCACAGCGCCCGTGCCAACGTTTTATCATCATTCGTACGCTCGTTTACCGCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCCGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGc                           >  1:1133651/1‑238 (MQ=255)
                                                                                                                                                                                         tttAAACTGGCGGTTT‑AA‑T‑TGTTG‑TCTTCAACCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCCTCCGTACGCCCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCCGGTAATAAATCGCGTTGTTCCTGCGTTGCTGCCGCCCGTCCATTGAAAAAAGGGGTAAAGAAAGGCCCATGAGGAGAATTATCCAGCATATTTAACGCCAGt                       >  1:514188/1‑238 (MQ=255)
                                                                                                                                                                                          ttAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTTAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAAATGCTTTAAAAATTCAGGTAATAAATCGAGTTGTTCCTGCGGTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTc                      >  1:966055/1‑238 (MQ=255)
                                                                                                                                                                                           aaagcTGGCGGTTA‑AT‑T‑TGTTT‑TCTCCACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGc                    <  1:1095142/235‑1 (MQ=255)
                                                                                                                                                                                            aaaCTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCCTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCCGTCCATTGAAAAACGGGGGAAAGAAAGGCACCTGAGGAGAATTATCCAGCATATTTAACGCCAGTc                      >  1:265828/1‑236 (MQ=255)
                                                                                                                                                                                                gtggtgTTT‑AA‑T‑TGTTGTTCTCCACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCACCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGTTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa                <  2:905530/234‑1 (MQ=255)
                                                                                                                                                                                                 cgggtggtgaatt‑tgttt‑TCTACACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa                <  1:1032691/227‑1 (MQ=255)
                                                                                                                                                                                                   cGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGGAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATAcc            >  1:481135/1‑239 (MQ=255)
                                                                                                                                                                                                                   g‑tCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt  >  2:760261/1‑236 (MQ=255)
                                                                                                                                                                                                                   g‑tCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt  >  1:637210/1‑236 (MQ=255)
                                                                                                                                                                                                                   |                                                                                                                                                                                                                                            
AAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTC‑AGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGT‑CACCTATCCAAAAGAAGAAG‑CCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑T‑TGTTG‑TCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT  >  NC_000913/2151484‑2151924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A