Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 540,610 C→T 9.0% Q16* (CAG→TAG)  ybbY → putative uracil/xanthine transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913540,6100CT 9.0% 347.1 / 4.1 131Q16* (CAG→TAG) ybbYputative uracil/xanthine transporter
Reads supporting (aligned to +/- strand):  ref base C (34/81);  new base T (11/2);  total (48/83)
Fisher's exact test for biased strand distribution p-value = 1.75e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 131 total aligned reads displayed.

AGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTATCACCCTTGGTGAAGCATCGCGCGGGAC  >  NC_000913/540373‑540845
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                              
aGTCACCCCTTTTTTTGGCCGTACCCTTGGCGCGCGTATCACGAAAACCATCTTACGTGGGGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCa                                                                                                                                                                                                                                               <  2:478623/239‑1 (MQ=255)
                gggcGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TACAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑tt                                                                                                                                                                                                                            <  1:1041511/236‑1 (MQ=255)
                ggCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCT‑CC‑CGTTAAGGTGGGTTTATG‑TTCAATTTTTCAGTCAGCCCCGGAA‑ACCCGTTATAA‑GGCTTTTAGT‑G‑GTGTTTCtttt‑tt                                                                                                                                                                                                                            >  1:729088/1‑239 (MQ=255)
                    gTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTTTG‑TTCAATTTTTCAGTCAGCCGCGCAA‑ACCCGGTATCA‑GGATTTTTGG‑T‑GGTTTTCtttt‑tttttt                                                                                                                                                                                                                        >  1:997606/1‑239 (MQ=255)
                     tccctttgggcggcgTATCACGAAATCCCTCTTACGTGGTGAGGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAAGCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTg                                                                                                                                                                                                                       <  2:75173/227‑1 (MQ=255)
                      tccATTGGGGCACGTATCACGAAAATCAACTTACGTGGTGATTGGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTg                                                                                                                                                                                                                       <  1:518518/237‑1 (MQ=255)
                          tttgcgcgcGTATTCCGAAAACCCTTTTGCGTGGTTGTGTGGATTACGACATTGAACAGGGGTTCCCTGGTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAACCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAaca                                                                                                                                                                                                                  <  2:394844/236‑1 (MQ=255)
                           tgggcggcgTTTCACGAAAACCATCTTACGTGGTGATGTGATTTACGCCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAacac                                                                                                                                                                                                                 <  2:862854/233‑1 (MQ=255)
                           tGGCGCCGGTTTCAAGAAAACCATTTTACGGGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAacac                                                                                                                                                                                                                 <  2:729088/239‑1 (MQ=255)
                                cgcgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGGTCAGGGGTGTTTATG‑TTCCATTTTGCCGTCAGCCGCGAAA‑GCCTGTTATCG‑AGGTTTTTGT‑G‑GTTTTTCTTTA‑TTTTTTGCCACAAGGttt                                                                                                                                                                                                            >  1:679891/1‑238 (MQ=255)
                                  cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGATTCT‑CC‑GGTTAGAGGGGGTTTATG‑TTTAATTTTGCAGTCACCCCCGCAA‑GCCTTTTTTTC‑GGGTTTCTGTGG‑GTTTTTTTTTT‑TTTTTTTCAACAGGGtgtg                                                                                                                                                                                                           >  2:406543/1‑236 (MQ=255)
                                  cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTTC‑CC‑GGGTAAGGGGGGGTTTTGTTTCATTTTTGC‑GTCAGCCCCGAAACGCCTTTTTTCG‑GGTTTTAGGG‑G‑GTTTTTTTTTT‑TTTTTTGAAAAAGGGTtgg                                                                                                                                                                                                           >  2:1156894/1‑238 (MQ=255)
                                  cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTTAGGGGGGTTTATG‑TTCCATTTTTCCGTCAGCCGCGCAA‑GACCGTTATCA‑GGGTTTTAGT‑G‑GTTTTTCTTTT‑TTTTTTTCTACACCGGtgtg                                                                                                                                                                                                          >  1:65955/1‑239 (MQ=255)
                                       cccGAACACCATCTTTCGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTTTTGCGCGGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTtcc                                                                                                                                                                                                     <  2:674317/237‑1 (MQ=255)
                                              cccATTTTTCCTGGTGATGTGATTTACGACATTGAACGGGGCTTCCCTGGTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                                                                                              <  2:657563/238‑1 (MQ=255)
                                              aCCATTTTACGTGGTGATGTGATTTACGGCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                                                                                              <  1:220315/239‑1 (MQ=255)
                                              aCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                                                                                              <  1:962702/239‑1 (MQ=255)
                                                 aTCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGCAA‑GACTGTTTTCC‑GGGTTTCCTT‑G‑GTTTTTCTTTA‑TTTTTTGTAAAACGGTTGTGGTTCCTCCCACGcc                                                                                                                                                                                            >  1:1261000/1‑237 (MQ=255)
                                                    ttACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAGACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGGGTGTTTATG‑TTCAATTTTTCAGGCAGCCGCGAAA‑GCCTGTTATTT‑GGATTTCAGG‑G‑GGTTTTCTTTT‑TTTTTTTCAACAAGGTTTTGTGTCCTCCTACGGCACtt                                                                                                                                                                                        >  2:531921/1‑239 (MQ=255)
                                                       cGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGGGTGTTTATG‑TTCAATTTTGCAGGCAGCCCCGAAA‑GCCTGTTATCA‑GGGTTTTAAT‑G‑GGTTTTTTTTT‑TTTTTTTCAAAACGGTTTTGGTTCCTCCTCCGCTACttttt                                                                                                                                                                                     >  1:474000/1‑237 (MQ=255)
                                                          ggtgATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCT‑CC‑GGTTTAGGTGTGGTTTTG‑TTCAATTTTTCCGTCAGCCGCGAAA‑GCCTGTTTTCT‑GGGTTTCAGT‑G‑GGTTTTTTTTT‑TTTTTTTCAACCCGGTTTTGTTTTCCCCCCCGCCACTTTCTgtt                                                                                                                                                                                  >  2:701133/1‑237 (MQ=255)
                                                           gtgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGGTAAGGGGTGTTTTTG‑TTCAATTTTGCAGTCAGCCCCGAAA‑GCCCGTTATCA‑GGATTTACGT‑G‑GGTTTTCTTTA‑TTTTTTTCAACACGGGTTTGGGTCCTCCTCCCCGACTTTCTGCtt                                                                                                                                                                                 >  1:1080003/1‑239 (MQ=255)
                                                            tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGGTAAGGGGTGTTTATG‑TTCAATTTTGCAGTTCGCCCCGCAA‑GCCTGTTATCA‑GGATTTTAGT‑G‑GTTTTTCTTTA‑TTTTTTTCCACACGGTTGTGGTTCCTCCCACGCTACTTTTTGCttt                                                                                                                                                                                >  1:1267629/1‑239 (MQ=255)
                                                              atgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTtcctc                                                                                                                                                                                                   <  1:934171/218‑1 (MQ=255)
                                                               tgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCT‑CC‑GGTTTAGGGGTGGTTATT‑TTTAATTTTGCAGTCAGCCGCGAAA‑GCCTGGTATCA‑GGATTTCAGT‑G‑GTTTTTTTTTA‑TTTTTTTCAACACCGGTGTGGTTCCTCCTACCCTACTTttttcttttcc                                                                                                                                                                             >  1:32387/1‑238 (MQ=255)
                                                                        ccgactttaaCCGGGCTTCCCTTTTGCGCCGAAAGGTCCATTTATCCTTAAACATCAGCAGTAATCGGGCCCCGGCAATGCCCGGCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCa                                                                                                                                                                    <  2:1317139/231‑1 (MQ=255)
                                                                        cGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGCATCT‑TC‑GGTTTAGGTGTGTTTATA‑TTTTATTTTTGAATCAGCCCGGGAA‑GACCGGTATTC‑GGGTATGCGG‑G‑GTTTTTTTTTATTTTTTTGCAA‑ACGGGTGTTGTTTCTCCCACGCCCCTTTCTGGTTTTCAATTTGCGCa                                                                                                                                                                    >  2:1257318/1‑239 (MQ=255)
                                                                        cGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGt                                                                                                                                                                                                        <  1:1364628/203‑1 (MQ=255)
                                                                           cATTGAACAGGGCTTCCCTTTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAg                                                                                                                                                                 <  1:78156/239‑1 (MQ=255)
                                                                           cATTGAACAGGGCTTCCATGTTTCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCa                                                                                                                                                                    <  1:1005280/236‑1 (MQ=255)
                                                                               gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCGTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc                                                                                                                                                             <  1:406543/239‑1 (MQ=255)
                                                                               gAACAGGGCTTCCCGGTTGGGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTTCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc                                                                                                                                                             <  1:527335/239‑1 (MQ=255)
                                                                                     ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCC‑GGTTAAGG‑GTGGTTATT‑TTCCATTTTTCCGTCAGCCGCGAAA‑ACCTGTTATCAGGGATTTC‑GT‑G‑GGTTTTTTTTT‑TTTTTTTCACACCGGTTGTGGTTTCCCCTACCCTCCTTTTTTCtttttcgtttgcccaaaagaccctgct                                                                                                                                                        >  2:583211/1‑215 (MQ=255)
                                                                                     ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTTAGGGGGGTTTTTG‑TTCTATTTTGTAGTCAGCCGCGAAA‑AACCGTTATAC‑GGGATTCTGTGG‑GTTTTTTTTTT‑TTTTTTTCAA‑ACGGTTGTGGTTCCCCCTTCACGCCTTTCTGTTTTTTATTTGCCCGAAAgaaacgctccc                                                                                                                                                       >  2:1005280/1‑229 (MQ=255)
                                                                                          cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTTT‑CC‑GGGTTAGGGGGGTGTATT‑TTTCATTTTGCAGTCAGCCGCCGAA‑GCCTGGTTTCA‑GGATTTTATG‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGGTGGTGTGTCTCCCACGCTCCTTTCTTCTTTTCAGTTTCCGCCAAAGAGCCCCCTTACGc                                                                                                                                                   >  2:1197987/1‑238 (MQ=255)
                                                                                          cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCT‑CC‑TGTTAAGGTGTGTTTATG‑TTCAATTTTGCCGTCAGCCGCGGAA‑CCCTGTTATAA‑GGGTTTCTTG‑G‑GTTTTTTTTTT‑TTTTTTTCAACACGGTTGTGGGTCTCCCTCCGCTACTTTTTTCTTTTTTGTTTTCGCACAGGAGcactcttaccc                                                                                                                                                   >  2:495442/1‑228 (MQ=255)
                                                                                          cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGGGGGGTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTTGTATCA‑GGATTTCCGT‑G‑GGTTTTCTTTT‑TTTTTTTCAACACGGTTTGGGTTCTCCCTAGCACACTTATTTCTTTTTAGTTTCCGCAAAGTAGcgcgtttaacc                                                                                                                                                   >  2:679232/1‑228 (MQ=255)
                                                                                           ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATTCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc                                                                                                                                                 <  1:305822/239‑1 (MQ=255)
                                                                                           ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc                                                                                                                                                 <  1:661808/239‑1 (MQ=255)
                                                                                           ccTGTGGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc                                                                                                                                                 <  1:388235/239‑1 (MQ=255)
                                                                                            cTGTTGCGCCCAAAGTCTAATGTTTTCTTGAACATCAGCAGTAGTCTGGACCCTGAAATCCCCGTCGCTCCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTACG‑TGGAATTTTGCAGTCAGGCGCGAAA‑GCCTGGTATCA‑GGATTTCCGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTCGCCGCAAAGTAGCCTGCTTACGCTCa                                                                                                                                                <  2:1052035/239‑1 (MQ=255)
                                                                                               ttGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCT‑CC‑GGTTCAGGTGTGTTTTTG‑TTCAATTTTGCAGGCCGCCGCGCAA‑GCCCGTTTTCA‑GGTGTTCAGT‑G‑GTTTTTCTTTT‑TTTTTTTCAACCCGGTTGTTGTTCCTCCTCACCTCCCTTTTTCTTTTTAGTTGCCCCCAAAGAGTCTCCTTACGCCCACGc                                                                                                                                             >  2:1374872/1‑239 (MQ=255)
                                                                                                 gcgcCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAAGGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCaa                                                                                                                                           <  1:209131/239‑1 (MQ=255)
                                                                                                            tCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCtttt                                                                                                                                  <  1:842352/237‑1 (MQ=255)
                                                                                                                      cTTAACCCTCAGGAGTAATCTGGCCCCTGGAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCATTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa                                                                                                                      <  1:1346637/239‑1 (MQ=255)
                                                                                                                      cTTAAACAGTAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa                                                                                                                      <  1:203772/239‑1 (MQ=255)
                                                                                                                              tCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGGGTGTTTATG‑TTCAATTTTTCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGGTTTCAGG‑G‑GTTTTTCTTTA‑TTTTTTTCAACACGGTTGTGGGTCCTCCTACCCTACTTTCTTCTTTTTTTTTGCCCCCAAGTAGCCTGCTTACGCTCACCCAAAATGTTTTTTTTTCTACCGCACCGGCCt                                                                                                               >  2:1098944/1‑238 (MQ=255)
                                                                                                                                   attattcgggCCCCTGCAATTCCCGTCTTTCGGGCGGGCATTTC‑CC‑GGTTAAGGTGGGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCt                                                                                                            <  2:1267629/228‑1 (MQ=255)
                                                                                                                                   agTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCtt                                                                                                           <  1:1214556/237‑1 (MQ=255)
                                                                                                                                     tAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCC‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTGCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAata                                                                                                                                         <  1:732519/205‑1 (MQ=255)
                                                                                                                                      aaTTTGGCCCCTGCATTGCCCGTCCTTGCGGCGGGCCTTCC‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCg                                                                                                         <  2:128078/236‑1 (MQ=255)
                                                                                                                                        tCTGGCCCCGGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAg                                                                                                    <  1:317415/239‑1 (MQ=255)
                                                                                                                                            gCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTTAGGTGTGTTTTTG‑TTCAATTTTTCAGTCAGCCGCGAAA‑ACCTGTTATCA‑GGATTTTAGT‑G‑GGTTTTTTTTT‑TTTTTTGCCACAAGGTTTTGGTTCCTCCTACGCTCCTTTCTTCTTTTCAGTTGCCGCAAAGTAGCCCGCTTACGCTCACCCAATATGCTTTTCTTTCTACCGCACTGGCCTGCTTCGCCTAGGCGt                                                                                                >  1:1354322/1‑239 (MQ=255)
                                                                                                                                            gCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGGTAAGGTGTGTTTATG‑TTCAATTTTTCAGTCAGCCGCGGAA‑GCCTGTTTTCA‑GGGTTTCCGT‑G‑GGTTTTCTTTA‑TTTTTTGCAACACCGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTTCGTTGCCGCAAAGTAGACTGCTTACGCTCACCCCATATGCTTTTCTTGCTACCGCCCTGGCCTGCTTCGCTCAAGc                                                                                                  >  1:162642/1‑237 (MQ=255)
                                                                                                                                                 tGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTTTG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTTCCGCAAAGGAGCCTGCTTACGCTCACGCAATATGCTTTTTTTGCTACCGCACCGGCCTGCTTCGCTCAGGCGgttttc                                                                                           >  1:826301/1‑237 (MQ=255)
                                                                                                                                                 tGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTTCATTTTTCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGGTTTCAGT‑G‑GGTTTTCTTTA‑TTTTTTGCAACACGGGTGTGGTTCCTCCTACGCTCCTTTCTGCTTTTTTGTTTCCGCCAAGAAGCCTGCTTACGCTCACCCCATATGCTTTTTTTTCTACCGCACTGGCCTGCTTctttctcttaaaaaa                                                                                            >  2:677710/1‑224 (MQ=255)
                                                                                                                                                 tGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                                                                                              <  1:241919/140‑1 (MQ=255)
                                                                                                                                                    aaTGCCCGTCCTTGCGGTGGGCATTCT‑CC‑GGGTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGt                                                                                        <  1:413516/239‑1 (MQ=255)
                                                                                                                                                      tGCCCGTCCTTGCGGCGGGCATTCT‑CCGGGTTAAGG‑GGGGTTATG‑TTTCATTTTGCAGTCAGCCGCGAAA‑GCCTGGTATCA‑GGGGTTCAGT‑G‑GTTTTTTTTTA‑TTTTTTTCCACACGGGTTTGGGTCCTCCTACGCTACTTTCTTCTTTTTAGTTGCCCCACAGTAGCCCGCTTACTCTCCCCCACTAAGCTTTTCTTGTTCCCCCACCGGCCCGCTTCGCTCCGGCGgttttctggc                                                                                       >  2:213432/1‑232 (MQ=255)
                                                                                                                                                            ttcTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg                                                                                <  1:531921/237‑1 (MQ=255)
                                                                                                                                                            tCCCTGCGGCGGGCATTCT‑CG‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCATCACGGTTGTGGTTCCTCCTACGCTACGTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg                                                                                <  1:150251/239‑1 (MQ=255)
                                                                                                                                                             ccTTGGGGGGGGGCTTCT‑CC‑GGTTAAGGGTTTTTTATG‑TTCAATTTTGCAGGCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc                                                                               <  2:997606/239‑1 (MQ=255)
                                                                                                                                                             ccTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTTTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc                                                                               <  1:422194/239‑1 (MQ=255)
                                                                                                                                                             ccTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCCGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc                                                                               <  1:640780/239‑1 (MQ=255)
                                                                                                                                                              ttcttgggggggtgtttttcgggTTAAGGTGTTTTTATG‑TTTAATTTTGCAGTCAGCCGCTAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTGTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg                                                                                <  2:1261000/218‑1 (MQ=255)
                                                                                                                                                              cttggcgcggGCATTCT‑CC‑GGTTAAGGTGTTTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg                                                                              <  1:1004925/233‑1 (MQ=255)
                                                                                                                                                              cTTGCGGCGGGCCTTGT‑CC‑GGTTTAGGTGTGTTTATG‑TTCAATTGTGCAGTCAGCCGCGAAA‑GCCTGGTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg                                                                              <  1:407384/239‑1 (MQ=255)
                                                                                                                                                              cTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg                                                                              <  1:583211/239‑1 (MQ=255)
                                                                                                                                                               tttggggtgggtttttccc‑GGTTAAGGTTTTTTTTTT‑TTCAATTTTGCAGTCAGCCGGGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACGCGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg                                                                              <  2:162642/222‑1 (MQ=255)
                                                                                                                                                                         cATTCC‑CC‑GGTTAAGGTGTTTTTATT‑TTCAATTTTGCAGGCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGa                                                                    <  1:679232/238‑1 (MQ=255)
                                                                                                                                                                                    gTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCTTCCCGCTATTATGGAAGGGCCAggg                                                          >  2:1207146/1‑238 (MQ=255)
                                                                                                                                                                                     ttAAGGTGTTTTTATT‑TTCAATTTTGCCGTCGGCCGGGAAA‑GCCTGTTATCA‑GTATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTGCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGGTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTg                                                         <  2:417525/239‑1 (MQ=255)
                                                                                                                                                                                       gggtgttgtTTTTT‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCTGGTTATCA‑GGGTTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTGGTGGTTCCTCCTCCGCTCCTGTCTTCTTTTCAGTTGGCGAAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGc                                                       <  2:823784/233‑1 (MQ=255)
                                                                                                                                                                                           tttgtTTATT‑TTAAATTTTGCATTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑T‑GTTTTTCTTTA‑TGTTTTGCAACCCGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCtg                                                    <  2:414693/236‑1 (MQ=255)
                                                                                                                                                                                           tgtttTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCtg                                                    <  1:1052581/238‑1 (MQ=255)
                                                                                                                                                                                           gttttttATG‑TTCAATTTTGCAGTCAACCCCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACTGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCtg                                                    <  1:264224/234‑1 (MQ=255)
                                                                                                                                                                                             tgtTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTgtgg                                                 >  2:94667/1‑239 (MQ=255)
                                                                                                                                                                                               tttATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACg                                                                                                                                                    >  2:791385/1‑138 (MQ=255)
                                                                                                                                                                                               tttATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACg                                                                                                                                                    <  1:791385/138‑1 (MQ=255)
                                                                                                                                                                                                  aTG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAATGGCCAGGTGGCCTGTGGTgggg                                            >  1:755244/1‑239 (MQ=255)
                                                                                                                                                                                                    g‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTTTGGGGGGGa                                           >  1:599032/1‑238 (MQ=255)
                                                                                                                                                                                                      tttaaTTTTGGAGTCAGCCGGGAAA‑GCCTGTTTGTA‑GGATTTCAGT‑G‑GTTTTTTTTTA‑GTTTTGGAAACCCGGTGGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCGTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAAc                                         <  2:372403/236‑1 (MQ=255)
                                                                                                                                                                                                      ttCAATTTTGCATTCATCCGCGAAA‑TCCTGTTTGTA‑GGATTTC‑GT‑GTGTTTTTCTTTT‑TTTTTGGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGAAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAAc                                         <  2:1080003/239‑1 (MQ=255)
                                                                                                                                                                                                        cAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGa                                                                    >  1:878304/1‑210 (MQ=255)
                                                                                                                                                                                                        cAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAAcc                                        >  1:1008957/1‑238 (MQ=255)
                                                                                                                                                                                                          aTTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCCCAGGCGTTTTGCGGTCATCTTCGCGCTCTTATGGAAGGGCCAGGTGGCCTGGGGGGGGGAACCaa                                      >  2:183793/1‑237 (MQ=255)
                                                                                                                                                                                                                cAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGt                                                                                                                                                                           >  1:101709/1‑99 (MQ=255)
                                                                                                                                                                                                                  gttccccccgAAA‑GCCTTTTTTTA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACCCGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTAt                             <  2:1008957/231‑1 (MQ=255)
                                                                                                                                                                                                                      gtcgcgAAA‑GGCTGTTATTA‑GGATTTCCGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACCCGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTATCAcc                         <  1:115383/237‑1 (MQ=255)
                                                                                                                                                                                                                      gtcgcaAAA‑GCCTTTTTTCA‑GGTGTGTCGT‑G‑TTTTTTCTTTA‑GTTTTGGTCACACGGGTGGGGTTCCCCCCACGATGCTTTCTGGTTTGCAGGTGCCGGTAAGTGGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACGGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTATCAcc                         <  2:356882/237‑1 (MQ=255)
                                                                                                                                                                                                                        ggcgAAA‑GCCTTTTATCA‑GGATTTTGGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACCCGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGGAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTATCACCCt                       <  2:65955/238‑1 (MQ=255)
                                                                                                                                                                                                                        cgcgAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTGCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTATCAcc                         <  1:701133/237‑1 (MQ=255)
                                                                                                                                                                                                                                          a‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAacac                                                                                                                                                                                                                 <  1:491875/36‑1 (MQ=255)
                                                                                                                                                                                                                                          a‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAacac                                                                                                                                                                                                                 >  2:491875/1‑36 (MQ=255)
                                                                                                                                                                                                                                          a‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTTTCACCCTTGGTGAAGCAtaccccg      >  1:1288056/1‑233 (MQ=255)
                                                                                                                                                                                                                                              aTTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg                                                                              >  2:684720/1‑164 (MQ=255)
                                                                                                                                                                                                                                              aTTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg                                                                              <  1:684720/164‑1 (MQ=255)
                                                                                                                                                                                                                                                ttCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCGAAGTAGCCTGCt                                                                                                                                                        <  1:1148414/88‑1 (MQ=255)
                                                                                                                                                                                                                                                ttCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCt                                                                                                                                                        <  2:1308808/88‑1 (MQ=255)
                                                                                                                                                                                                                                                ttCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGCTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTATCACCCTTGGTGAAGCATCGCGCgggcc  >  1:592119/1‑236 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                              
AGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCT‑CC‑GGTTAAGGTGTGTTTATG‑TTCAATTTTGCAGTCAGCCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑G‑GTTTTTCTTTA‑TTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGTGGTGGGGAACCATCCTTACTATCACCCTTGGTGAAGCATCGCGCGGGAC  >  NC_000913/540373‑540845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A