Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,542,118 A→G 12.8% R27R (AGA→AGG)  fimE → tyrosine recombinase/inversion of on/off regulator of fimA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,542,1180AG12.8% 260.1 / 4.9 112R27R (AGA→AGG) fimEtyrosine recombinase/inversion of on/off regulator of fimA
Reads supporting (aligned to +/- strand):  ref base A (47/46);  new base G (13/3);  total (63/49)
Fisher's exact test for biased strand distribution p-value = 2.91e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 112 total aligned reads displayed.

GATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATT  >  NC_000913/4541885‑4542349
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           
gATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTTTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       <  1:222248/239‑1 (MQ=255)
gATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       <  1:71804/239‑1 (MQ=255)
    ttttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTTTAC‑GGGGCAAAGGGAGACCGAGA‑ATATTgg                                                                                                                                                                                                                                   >  2:222248/1‑238 (MQ=255)
                         aaTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCCACGGGAGCCAGGGA‑TTATTGTCTTATTCTGTTGGCATAACg                                                                                                                                                                                                               >  1:36028/1‑238 (MQ=255)
                           tGTAATTGACTTATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCa                                                                                                                                                                                                            <  1:994828/239‑1 (MQ=255)
                           tGTAATTGACTGATAGCCAAATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCa                                                                                                                                                                                                            <  1:1223536/239‑1 (MQ=255)
                            atttgtataagagacagacaTCCCTCCGTGGTGGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATGGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCa                                                                                                                                                                                                            <  2:512913/221‑1 (MQ=255)
                               agtGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGATGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATggg                                                                                                                                                                                                        <  1:842421/237‑1 (MQ=255)
                               aTTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTGTAC‑GGGGCAACGGGAGCCAGGAG‑TTATTGTCTTATTCTGTTTGCATATCGGCATggg                                                                                                                                                                                                        >  1:1228631/1‑239 (MQ=255)
                               aTTGACTGATAGCCAAATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATggg                                                                                                                                                                                                        <  1:382860/239‑1 (MQ=255)
                                ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGCTTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTTTACGGGGGCAACGGGA‑CCAAGGA‑TTATTGTCTTTTTTCGTTgggccatgtctcttaaa                                                                                                                                                                                                       >  2:1212625/1‑224 (MQ=255)
                                ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTTTAC‑AGGGGAACGGGAGCCAGCGG‑ATATTTTTTTTTTTTTGTGGCAAATCGGccagggg                                                                                                                                                                                                       >  2:1223536/1‑233 (MQ=255)
                                       aTAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTAAGGCCATGATGCAGGCGGTTTGTTAC‑CGGGCAACGGGGCGCAGAGA‑ATATTTTCTTTATCTGTTGGCATATCCGCATGGGGTGCGGAt                                                                                                                                                                                                >  1:96858/1‑239 (MQ=255)
                                             acttCACTTCGTTTTTGGTTATTTTTTTATCTATTGGGCTAATTTTTACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑a                                                                                                                                                                                        <  2:119989/236‑1 (MQ=255)
                                             acaTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTATTTTTCTTTTGGAGTATTTGCATGGGGTGCGGAGTA‑GTG‑a                                                                                                                                                                                        >  2:37572/1‑239 (MQ=255)
                                                 ctcTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTg                                                                                                                                                                                    <  1:37572/237‑1 (MQ=255)
                                                 cACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGCGCCAGAGG‑TTATTGTCTTTTTCTGTTTGGAATTTGGCCTTGGAATCGTATTA‑GTG‑CAca                                                                                                                                                                                     >  1:1189984/1‑237 (MQ=255)
                                                   cTCCGTGTGTTGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAAGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTAAGGCCCTGATGCAGGCGGGTTGTTAC‑AGGGGAAAGGGAGACAGAGA‑TTCTTTTGTTTTTCTGTTGGCATTACGGccaggggagcggaataattaaac                                                                                                                                                                                       >  2:45835/1‑214 (MQ=255)
                                                    tCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTA‑GTG‑AACtcgtt                                                                                                                                                                                 >  1:206516/1‑235 (MQ=255)
                                                        tgtgttGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       <  2:361256/183‑1 (MQ=255)
                                                        tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       >  1:361256/1‑183 (MQ=255)
                                                        tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAAGGA‑TTTTTGTGTTATTCTGTTTGCATAACGGCATGGGGTGCggacttactcttatacaaca                                                                                                                                                                                >  1:512913/1‑219 (MQ=255)
                                                        tgtgtgGTTATCTTTGTATCTATTGGGCTAATTTTGACCGATTGAGGTTACGTATAGGTATTCATTCAAAT‑ATATCTCAGGTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGAAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTAtt                                                                                                                                                                                               <  1:649135/223‑1 (MQ=255)
                                                         gtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑GTATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAA‑GGGGGAAAGGGAGCCA‑AGAGTTATTGTCTTTTTTTTTTGGCATAACCGCATGGGGTGGGTATTT‑GAG‑AACTGTTTTAttt                                                                                                                                                                            >  2:522391/1‑237 (MQ=255)
                                                            tgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTTTCTTATTTTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATTTGCa                                                                                                                                                                         >  1:347256/1‑239 (MQ=255)
                                                             tgtttacTTTTTTACTATTGGGTTAAATTTTGCCGGTTGGAGTTTCCCAAAGGGTTTCCATCAAAT‑ATATCTCAGTTAGGAATTCTTCTATTTGGAATAAACGGCGGTTTCTTACCGGTAAAGAAGGTCAGGGCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCa                                                                                                                                                                         <  1:906591/232‑1 (MQ=255)
                                                              gTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTTTAC‑CGGGGAAAGGGAGCCACGGG‑TTATTTGCTTTTTTTGTTGGCCAATCGGGATGGGGGGGGTATTA‑ATG‑GAATGCTTTATTTGCA‑tt                                                                                                                                                                      >  2:65800/1‑239 (MQ=255)
                                                                  tCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑TTG‑AACTGCTTGATCTTCA‑TTATCa                                                                                                                                                                  >  1:1054498/1‑239 (MQ=255)
                                                                         aTCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCa                                                                                                                                                                                                            <  2:358805/193‑1 (MQ=255)
                                                                                 ggCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATc                                                                                                                                                                   <  1:1094895/223‑1 (MQ=255)
                                                                                   ttAATTTTGCCCGATTGAGGTTTCCTTTAGGTATTCATTCAAAT‑ATATCCCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAAt                                                                                                                                                  <  2:36028/237‑1 (MQ=255)
                                                                                    tAATTTTGACCGATTGGGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       <  2:1077053/155‑1 (MQ=255)
                                                                                    tAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       >  1:1077053/1‑155 (MQ=255)
                                                                                      aTTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGTTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGGCACGGGACGCCGAGA‑TTATTGTCTTTTTCTTGTGGCAGAACGGCATTGGAGGCGTATTA‑TTG‑AACTTCTTGTTTTGCA‑TTATCAAGAACCTTACCCTTATGAAg                                                                                                                                              >  2:941130/1‑239 (MQ=255)
                                                                                       tttttaagaggcagggTTTCCTATAGGTTTTCATTCAAAT‑ATATCTCAGTTAAGAGGACTACTATTGGGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAgg                                                                                                                                             <  2:1003969/225‑1 (MQ=255)
                                                                                           gACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGGATGGGATGCGTCTTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGgaga                                                                                                                                         >  1:731353/1‑239 (MQ=255)
                                                                                           gACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAA‑GGGGCAACGGGGGCCCGGGA‑TTATTGTCTTATTCTTTTGGCATATTGGCATGGGATGCGGATTA‑GTGAAACTGTTTGTTTTGC‑‑TTTTCCGggccttgacctttctttttaacac                                                                                                                                         >  2:1094895/1‑227 (MQ=255)
                                                                                                         tCCTATAGGTATTCATTCACAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCCAAGGGAGCCAGAGG‑TTTTTGTCTTATTTTTTTGGCCTATCGGGACGTGATGAGCGTTT‑GTT‑GACTTCTTTTACTGCA‑TTGTCAGGACCCTGTCCTTTATGAAGGGAGAAAAAAAAtttccca                                                                                                                           >  2:1190328/1‑234 (MQ=255)
                                                                                                          ccTATAGGTATTCATTCAAAT‑ATATCGCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGt                                                                                                                                            <  1:673227/221‑1 (MQ=255)
                                                                                                           cTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑a                                                                                                                                                                                        <  1:793980/177‑1 (MQ=255)
                                                                                                                ggTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAAAGGGAGCCCGGGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGCTGCGTGTTA‑GTG‑AACTGCTTGATTTGCC‑TTATCAGGACCTTGACCTTAATGCGAGTAGaataaaaactgtttctttttaa                                                                                                                    >  1:1003969/1‑223 (MQ=255)
                                                                                                                   tttaattcaAATAATATC‑CGGTTAGGAGTACTACTATTGTGAGTAAACGGTGTTATCTTAACGGTAAAGAAGGTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAAc                                                                                                                 <  2:890959/235‑1 (MQ=255)
                                                                                                                   attcattcAAAT‑ATATCTCAGTTAGGAGTACTACTAGTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAAc                                                                                                                 <  1:97618/239‑1 (MQ=255)
                                                                                                                    ttcattcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       <  2:243648/123‑1 (MQ=255)
                                                                                                                    ttcattcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTTGCATATCGGCATGGGATGCGGATTA‑GTT‑AAATGCTTGATCTTCA‑TTATCAGGCCCTTTGCCTTAATGAAGGGaaaaaaaaaaactttttcttaaacaaa                                                                                                                 >  2:673227/1‑219 (MQ=255)
                                                                                                                    ttcattcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACCGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCCTATCGGCATGGGATGCGGATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGGATAAATATTCGCCGCCTGAGGAACg                                                                                                                >  1:62122/1‑239 (MQ=255)
                                                                                                                    ttcattcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑AGGGCAACGGGAGCCAGAGa‑tta                                                                                                                                                                                                                                       >  1:243648/1‑123 (MQ=255)
                                                                                                                      cattcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTTTAC‑CGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATTCGCATGGGATGGGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATACGGACCTTGACCTTAATGGAGGTAGAATAAATATTCTCCGACTGAAGAACGGa                                                                                                              >  1:890959/1‑239 (MQ=255)
                                                                                                                      cattcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCCACGGGAGCCAGCGG‑TTATAGTCTTATTTTGTTGGCATATCGGCATGGGGAACGTCTTA‑GTG‑AAATCCTTGGTCTCCA‑TTATAGGGACCTTGTCCTTATATAAGGAGGAATAAAAATTCTCCGCCTGAAAAAAggg                                                                                                              >  2:1366012/1‑238 (MQ=255)
                                                                                                                         tcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCg                                                                                                                                                                                                   <  2:135521/154‑1 (MQ=255)
                                                                                                                         tcaAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCg                                                                                                                                                                                                   >  1:135521/1‑154 (MQ=255)
                                                                                                                           aaaT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCCTATTCTGTTGGCATATCGGCCTGGGATGCGGATTA‑GTG‑AACTGCCTGGTCCGCA‑TTTTTAGGACCCTGACCTTTATGAGTGTAAAATAAATATTCGCCGCCTGAAGAAAGGAttttt                                                                                                         >  2:265015/1‑238 (MQ=255)
                                                                                                                                  atCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑CGGGCAACGGGAGCCAGAGA‑TTATTTTCTTATTCTTTTGGCCTATCGGCATGGGATGCGTATTA‑GTG‑AACTCCTTGATCTGCA‑TTATCCGGACCTTGACCTTAATGAAGGTAGAATAAAAATTCGCCGCCTTAAGAACGGATTTTCTACCGt                                                                                                   >  1:1263169/1‑239 (MQ=255)
                                                                                                                                        gTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCAATGGATGCGGATTATGTG‑‑ACTGTTTGATCTGCA‑TTATTAGGAACTTGAACTTAATAGAGGGAGAATAAAAAATTGCCAGCCGAAAAAAGGATTTTTTACCATTccacc                                                                                             >  2:598587/1‑235 (MQ=255)
                                                                                                                                           aGGGGTTCTACTTTTTTTAGTAAACGGTGTTATCTTACCGGTAAAGAAGTTCAGGCCATGGTGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGtt                                                                                          <  2:206516/239‑1 (MQ=255)
                                                                                                                                                 actactATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGGCACGGGAGCCCGAGA‑TTATTGTCTTATTCTTTTGGGATATTGGCATCGGGAGCGGATTT‑GTT‑GCATGCTTGATCTGCA‑TTTTCCGGACCTTTACCTTACTGGAGGTAGAATAAATATTCGCCGACTGAAGAAACGGTTTTCTACCGTTTACCCATTACGttt                                                                                    >  2:987066/1‑239 (MQ=255)
                                                                                                                                                 actactATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGGGCCAGAGA‑TTATTGTCTTATTCTGTTGGCAAATCGGCATGGGGTGCGTATTA‑GTG‑AACTTCTTTATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTGGAATAAATATTCGCCGACTGGAGAACGGATTTTTTACCGTTCACCCGTTAAGttt                                                                                    >  1:1285517/1‑239 (MQ=255)
                                                                                                                                                 actactATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTTTGTTTGCATATCGGCATGGGGTGCGGATTA‑GTG‑AACTGCTTGATCTGCA‑TTTTCCAGACCTTGACCTTAATGAAGGGAGAATAAATATTCCCCCCCTGAAGAAAGGATTTTTTCCCGTTCCCCCCTTTCtttt                                                                                    >  2:828190/1‑239 (MQ=255)
                                                                                                                                                   tactaTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGGAGAATAAATATTCGCCGCCTGAAGAACGGGTTTTTTTCCGTTTAccccgtcagttttg                                                                                  >  1:1147543/1‑228 (MQ=255)
                                                                                                                                                   tactaTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCCGCATGGGGTTGGTATTT‑ATG‑AACTGCTTGATTTGCC‑TTATTAGGGCCTTGAACTTTATGAAGGCATAATAAATATTCGCCCCATGAAAAACGGCATTTTTACCCTTCTCCCCTTACGTTTtg                                                                                  >  2:73485/1‑239 (MQ=255)
                                                                                                                                                     ctaTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGGGCCCGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑GACTCCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATTAAGGTAGAATAAATATTTCCCCACCAAAAAAAGGATTTTTTACCGtttaaccctaaaggttttga                                                                                >  2:591120/1‑221 (MQ=255)
                                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTTTAC‑TGGGCAACGGGAGCCAGAGA‑TTATTGGCTTATTCTTTTGGCCTATCGGCATGGGTTGCGGATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAAGTAGAATAAAATTTCGCCGCCTTAAGAACGGATTTTTTACCGTTTACCCTTTACGTTTTGATTAGCGTGa                                                                        >  1:1235648/1‑239 (MQ=255)
                                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAAAATTTGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGCTACGTTTTGATGAGCGTGa                                                                        >  1:315545/1‑239 (MQ=255)
                                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAAAATTCGCCGCCTGAGAAACGGGTTTTCTACCGTTCACCCGTTAAGTTTtgatgacgcgga                                                                        >  1:87400/1‑233 (MQ=255)
                                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTA‑GTG‑AACTGCTTGATCTGCC‑TTATTAGGGCCTTTGCCTTAATTAAGGGAGAAAAAATATTTTCCGACTGAAAAACGGATTTTCTACCGTTCCTCCGGTACGGTTTGATTAggggta                                                                        >  1:844908/1‑234 (MQ=255)
                                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTTACCCGGTACGTTTTGATTAGccgta                                                                        >  1:359016/1‑235 (MQ=255)
                                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAAAGGGAGCCAAGGA‑TTATTGGCTTATTCTGTTGGTATATGGGGCAGGGATGGGGATTA‑GGG‑AACTTCTTTGACTGCA‑TTATCAGGACCCTGACCTTAATAAAGGGTGAATAAATATTCCCCGACTGAAGAACGGATTTTTTACGGGTGAACCGTTACGATTTTATGAGCGTGa                                                                        >  1:946326/1‑239 (MQ=255)
                                                                                                                                                             aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGAAAAGGGAACCAGAGA‑TTGTTGTCTTATTTTTTTGGCACATTGGCTCGGGATCCGTAATA‑GGG‑AACTGCCTGATCTGCC‑TTATCCGGTGCTTTGCCTTTAAGAAGGGAGAAGAAATTTTCAACGGATTAAGAACAGATTTGGTTCCGTTCCCCCGTTTCGTTTTTATTGGCGTGa                                                                        >  1:60751/1‑239 (MQ=255)
                                                                                                                                                               tAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGGGCCAGAGA‑TTATTGTCTTATTCTTTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑GACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTTGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGGGaa                                                                       >  1:131850/1‑238 (MQ=255)
                                                                                                                                                                  aCGTTGTTTTCTTACAGGTAAAGAAGTTCAGGGCATGATGTCGGCGGTTTGTTGC‑GGGGCACAGGGAGCCAGGGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCg                                                                   <  2:1235648/239‑1 (MQ=255)
                                                                                                                                                                  aCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAAAGGGAGCCAGAGC‑TTATTGTCTTATTCTTTTGGCATATCGGCATGGGGGGCGTATTA‑GTG‑AAATGCTTGTTTTGCC‑TTTTCAGGGCCTTGACCTTAATGAAGGGAGAAAAAAAATTTGCCCACTGAGGAAAGGATTTTTTACCGTTTCCCCCCTAAGTTTtgttagagggaaaaacg                                                                   >  2:479103/1‑224 (MQ=255)
                                                                                                                                                                     tcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTTGCCGACTGGAGAACGGATTTTTTAACGTTTACCCCTTACGTTTTGATAGGGCTGAAGCCgggg                                                                >  1:83511/1‑239 (MQ=255)
                                                                                                                                                                         tagcctACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGAGCTGCA‑TTATCAGGACCTTGACCTTAAGGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACg                                                            <  1:987066/234‑1 (MQ=255)
                                                                                                                                                                         tATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGGGA‑GTATTGTCTTATTCTGTTGGCCTATCGGCATGGGATGCGTATTA‑GGG‑AACTGCTTGGTCTGCA‑TTATCAGGACCTTGACCTTAAAGAAGGAGGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAGCTTTTGATGTGGGTGAAGACGTGGGAc                                                             >  1:55767/1‑238 (MQ=255)
                                                                                                                                                                          tttttACCGGTTAAGGAGTTCAGGCCATTATTCAGGCGGTTTTTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTAGTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGc                                                           <  2:1285517/236‑1 (MQ=255)
                                                                                                                                                                           tCTTACGGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                          <  1:1167482/239‑1 (MQ=255)
                                                                                                                                                                           tCTTACCGGTAAAGAATTTTAGGCCATGGGGGAGGGTGTTTGTTAC‑GGGGCAACGGGGGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                          <  2:55767/239‑1 (MQ=255)
                                                                                                                                                                               aCCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACTGGGGCAA‑GGGAGCCAGAGA‑TTTTTGTCTTATTTTTTTGGCATTACGGCATGGGAGGCGGGTTT‑TGG‑AACCGCTTTGTTTGCATTTTTCAGACCTTTGACTTTATGGAGGGAAGAATAAAATTTCGCCCCTTAGAAAAGGGATTTTTTCCCGTTCCCCCGACACGTTTTGTTGA‑CGCGAAGcccggggaaacgtga                                                       >  2:26094/1‑225 (MQ=255)
                                                                                                                                                                                ccGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGGTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGAcc                                                     <  1:65800/239‑1 (MQ=255)
                                                                                                                                                                                     aaaGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGAt                                                                                                                                                                              <  2:910778/114‑1 (MQ=255)
                                                                                                                                                                                            tttaGGCCATGTTGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGT‑TTATTGTCTTATTCTGTTGTCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCt                                         <  2:60751/236‑1 (MQ=255)
                                                                                                                                                                                             ttaGGCCATGATGCGGGCTGTTTGGTCC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCAAATCGGCATGGGATGCTTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCt                                         <  2:731353/236‑1 (MQ=255)
                                                                                                                                                                                             tCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCt                                         <  1:828190/238‑1 (MQ=255)
                                                                                                                                                                                              cAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGGGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCg                                                                                                                                                                                                   >  2:420156/1‑86 (MQ=255)
                                                                                                                                                                                              cAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCg                                                                                                                                                                                                   <  1:420156/86‑1 (MQ=255)
                                                                                                                                                                                              cAGGCCATGACGCAGGCGGTTTGTTTC‑GGGGAAAAGGGGGCCAGAGA‑TTATTGTCTTATTCTTGTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTaa                                       <  2:1263169/239‑1 (MQ=255)
                                                                                                                                                                                                 gCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAAc                                              <  1:21809/229‑1 (MQ=255)
                                                                                                                                                                                                   cATGAGGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGa                                  <  1:591120/239‑1 (MQ=255)
                                                                                                                                                                                                    atgatgCAGGCGGGTTGGTAC‑GGGGCAACGGGAGGCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTAACAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGaa                                 <  1:265015/239‑1 (MQ=255)
                                                                                                                                                                                                      gatgCAGGCGGTTTGTTAC‑GGGGCAACGGGATCACGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGGGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAAGAACTTGACCCTTATGAAGGGAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTAAGATTTGATGACAGTTTACCCGGGGGATGCTGGTCCCCGGAACGTGCTAACTGGaagg                               >  1:1036248/1‑237 (MQ=255)
                                                                                                                                                                                                         gctggtgtttttttGC‑GGGGCAACGGGAGCCAGAGA‑TTATTTTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTCGACCTTAATGAAGGTAGAATAAATAGTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGgcg                            <  2:96858/231‑1 (MQ=255)
                                                                                                                                                                                                           aGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTTGCATATCGGCATGGGGTGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTTACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGGTTTTTTACCCTTCACCCCTTACGTTTTGATTAGCGGGAAACCGTGGAAACCTGGCCCCCGGaaacggccaacaggccgtctttt                          >  2:21809/1‑218 (MQ=255)
                                                                                                                                                                                                             gCGGTTTGTTAC‑GGGGCAACGGGAGCCCGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTA‑GGG‑AAATCCTTGATCTGCA‑TTTTCAGGGCCTTGGACTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCCCCCCGTACGTTTTGTTGAGCGTGAAGCCGTGGTATCATGGACCCCGGAAAGTGGTAATTGGAAAgggggggg                        >  2:836071/1‑233 (MQ=255)
                                                                                                                                                                                                               tttttGTTAC‑GGGGCAGTGGGATCCGGGGA‑TTATTTTTTTATTCTGGTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATAGTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGAc                       <  2:1189984/236‑1 (MQ=255)
                                                                                                                                                                                                                    gTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACt                 <  1:1249399/239‑1 (MQ=255)
                                                                                                                                                                                                                        agggggCAACGGGAACCAAGTA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATTCGTATTA‑GGG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGAc              <  1:723943/237‑1 (MQ=255)
                                                                                                                                                                                                                          ggggCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGc            <  1:26094/239‑1 (MQ=255)
                                                                                                                                                                                                                              cAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCTTGGAACGCTGGACCCAGGAACGTGCTAAATGGAAAGGCGCTGACCGGACTGACGCtata        >  2:1000445/1‑239 (MQ=255)
                                                                                                                                                                                                                                 cGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGGGCTAACTGGAAAGGCGCTGCCCGGACTGACGCTAtattt     >  1:1089259/1‑239 (MQ=255)
                                                                                                                                                                                                                                      gCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCT‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAACTATTCGCCGCCTGACGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGTGCGGGAACCCGCGGAACGCGGGACCCAGAAACGTGCTAACCGGAAAGGCGCTGACCGGAATGCCGccaacttcatt  >  2:924739/1‑227 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           
GATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAAT‑ATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAC‑GGGGCAACGGGAGCCAGAGA‑TTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTA‑GTG‑AACTGCTTGATCTGCA‑TTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATT  >  NC_000913/4541885‑4542349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A