Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F70 I1 R1	14	80.0	1838586	92.3%	1697014	136.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	2,372,946	G→T	A277D (GCT→GAT)	pbuG ←	NCS2 family nucleobase:cation symporter‑2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,372,946	0	G	T	98.7%	255.3 / NA	78	A277D (GCT→GAT)	pbuG	NCS2 family nucleobase:cation symporter‑2
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (39/38); minor base C (1/0); total (40/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTAGCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTCAATA  >  CP000730/2372809‑2373083

cacCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCaa                                                                                                                                         >  2:134778/1‑141 (MQ=255)

    tGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGc                                                                                                                                     <  1:497361/141‑1 (MQ=255)

      aaGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGcta                                                                                                                                   >  2:685292/1‑141 (MQ=255)

      aaGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGcta                                                                                                                                   >  2:685287/1‑141 (MQ=255)

        gTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGctact                                                                                                                                 >  1:560875/1‑141 (MQ=255)

         ttGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGctacta                                                                                                                                >  1:188824/1‑141 (MQ=255)

            aTTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATg                                                                                                                             >  1:358989/1‑141 (MQ=255)

             ttCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTATAGAATGTGAGAAAAGTTCGCTGCCAGCGCTGGGGAATTTATTATCGTTCATAATACCTGCTTGAGTACCAACAGCGACTAATG‑t                                                                                                                           >  1:915780/1‑141 (MQ=255)

                  tataAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAg                                                                                                                      >  2:593211/1‑141 (MQ=255)

                   ataAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGc                                                                                                                     <  1:561407/141‑1 (MQ=255)

                   ataAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGc                                                                                                                     <  1:128335/141‑1 (MQ=255)

                   ataAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGc                                                                                                                     <  1:842810/141‑1 (MQ=255)

                          gttgttGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCa                                                                                                              >  2:762294/1‑141 (MQ=255)

                            tgttgtAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCaaa                                                                                                            >  1:205445/1‑141 (MQ=255)

                               tgtAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGaa                                                                                                         >  1:341094/1‑141 (MQ=255)

                                gtAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGc                                                                                                                     <  2:85192/128‑1 (MQ=255)

                                gtAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGc                                                                                                                     >  1:85192/1‑128 (MQ=255)

                                gtAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGaaa                                                                                                        <  2:189032/141‑1 (MQ=255)

                                    ttgttCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCaa                                                                                                    <  1:505696/141‑1 (MQ=255)

                                              gtatGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGaa                                                                                          >  2:192377/4‑141 (MQ=255)

                                               aCTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAAc                                                                                         >  1:520015/1‑141 (MQ=255)

                                                cTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCATCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACg                                                                                        <  1:420637/141‑1 (MQ=255)

                                                cTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACg                                                                                        >  1:821537/1‑141 (MQ=255)

                                                    tCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTaa                                                                                    >  2:161400/1‑141 (MQ=255)

                                                    tCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTaa                                                                                    >  2:262250/1‑141 (MQ=255)

                                                     ccTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTaaa                                                                                   <  2:136385/141‑1 (MQ=255)

                                                       tACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAAt                                                                                 <  1:2890/141‑1 (MQ=255)

                                                       tACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAAGG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAAt                                                                                 <  2:180406/141‑1 (MQ=255)

                                                         cAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATaa                                                                               >  1:916962/1‑141 (MQ=255)

                                                            tcctAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACaa                                                                            <  2:738635/138‑1 (MQ=255)

                                                            tCGTAGCTAACGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACaa                                                                            >  2:562633/1‑141 (MQ=255)

                                                            tCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACaa                                                                            <  2:218832/141‑1 (MQ=255)

                                                             cGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAAt                                                                           >  1:703572/1‑141 (MQ=255)

                                                                   tAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGaa                                                                     <  1:292052/141‑1 (MQ=255)

                                                                   tAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGaa                                                                     <  1:294927/141‑1 (MQ=255)

                                                                       gAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGt                                                                 <  2:720153/141‑1 (MQ=255)

                                                                        aaTCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTa                                                                <  1:713739/141‑1 (MQ=255)

                                                                         aTCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTAt                                                               >  1:794566/1‑141 (MQ=255)

                                                                         aTCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTAt                                                               <  1:38464/141‑1 (MQ=255)

                                                                             gagaACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGtt                                                           >  1:437251/1‑141 (MQ=255)

                                                                              agaACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTta                                                          >  1:809180/1‑141 (MQ=255)

                                                                                  cAATGCTCTACCAGCTCGTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTtaataa                                                      <  2:603282/141‑1 (MQ=255)

                                                                                     tGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTg                                                   >  1:356994/1‑141 (MQ=255)

                                                                                      gCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGa                                                  >  1:891572/1‑141 (MQ=255)

                                                                                      gCTCTACCAGCTCTGGGTAATTTTTAATTTTCAAAAATACCGGCTTGCGCATCACCA‑CTACTTATGTTACCACCGGTATCAAAGAAATCAATAAATAAGAACGTTAAAATACCAATGAAGAACTGTACCGTAAAAAATTGa                                                  >  2:596509/1‑141 (MQ=255)

                                                                                       ctctACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGAc                                                 <  2:358989/141‑1 (MQ=255)

                                                                                        tctACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACt                                                <  2:560875/141‑1 (MQ=255)

                                                                                           aCCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTgg                                             <  1:73735/141‑1 (MQ=255)

                                                                                            ccAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTggg                                            >  1:249563/1‑141 (MQ=255)

                                                                                             cAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGt                                           <  1:673327/141‑1 (MQ=255)

                                                                                              aGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTc                                          >  1:338161/1‑141 (MQ=255)

                                                                                                ctctTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCtt                                        <  1:384516/141‑1 (MQ=255)

                                                                                                 tctTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCttt                                       <  2:191471/141‑1 (MQ=255)

                                                                                                    tGGTAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTaaa                                    >  2:398091/1‑141 (MQ=255)

                                                                                                       tAATTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGc                                 <  2:156224/141‑1 (MQ=255)

                                                                                                        aaTTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCt                                <  1:285989/141‑1 (MQ=255)

                                                                                                        aaTTTATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCt                                <  2:511833/141‑1 (MQ=255)

                                                                                                          tttATTATCTTTCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTc                              >  1:211889/1‑141 (MQ=255)

                                                                                                                    ttCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATgcagca                    <  2:891572/141‑1 (MQ=255)

                                                                                                                     tCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCAc                   >  2:904578/1‑141 (MQ=255)

                                                                                                                     tCATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCAc                   <  2:520015/141‑1 (MQ=255)

                                                                                                                      cATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCAcc                  >  1:753844/1‑141 (MQ=255)

                                                                                                                      cATAATACCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCAcc                  >  2:700589/1‑141 (MQ=255)

                                                                                                                        taataCCTGCTTGAGAATATCCATCTACTTATG‑TATCTGCTGTATCAATGAAACCAATATATAAGAACGTTAAAATAACAATTAAGCACTGTATCGTTAATAATTGACTTGAGTCTTTAAACGCTTCAAATGCAGCACCGa                <  1:100201/141‑1 (MQ=255)

                                                                                                                           taCCTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACg             >  2:883499/1‑141 (MQ=255)

                                                                                                                             ccTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGtt           >  2:809541/1‑141 (MQ=255)

                                                                                                                              cTGCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTT‑GGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTgg         >  2:290595/1‑141 (MQ=255)

                                                                                                                                gCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGt        >  2:481327/1‑141 (MQ=255)

                                                                                                                                gCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGt        <  1:158954/141‑1 (MQ=255)

                                                                                                                                gCTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTGCTAATGCAGCACCGAACGTTGGt        >  2:37542/1‑141 (MQ=255)

                                                                                                                                 cTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGtt       <  2:821537/141‑1 (MQ=255)

                                                                                                                                 cTTGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGtt       <  2:116997/141‑1 (MQ=255)

                                                                                                                                  ttGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAACCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTc      <  1:398200/141‑1 (MQ=255)

                                                                                                                                   tGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTCa     >  2:193484/1‑141 (MQ=255)

                                                                                                                                   tGAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTCa     <  2:500371/141‑1 (MQ=255)

                                                                                                                                    gAGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTCaa    <  2:481784/141‑1 (MQ=255)

                                                                                                                                     aGTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTCAAt   >  1:612283/1‑141 (MQ=255)

                                                                                                                                      gTATCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTCAATa  <  1:206758/141‑1 (MQ=255)

CACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTGAGAACAATGCTCTACCAGCTCTTGGTAATTTATTATCTTTCATAATACCTGCTTGAGTAGCAACAGCTACTAATG‑TACCAGCTGTATCAAAGAAATCAATAAATAAGAACGTTAAAATAACAATTAAGAACTGTATCGTTAATAATTGACTTGGGTCTTTAAACGCTTCAAATGCAGCACCGAACGTTGGTTCAATA  >  CP000730/2372809‑2373083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A