Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,002,862 |
(T)7→8 |
intergenic (‑87/‑145) |
pitA ← / → yhiN |
phosphate transporter, low‑affinity/predicted oxidoreductase, FAD/NAD(P)‑binding domain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,002,855 | 1 | . | T | 100.0%
| 110.4
/ NA
| 34 | intergenic (‑80/‑152) | pitA/yhiN | phosphate transporter, low‑affinity/predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (5/29); total (5/29) |
GGCGCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGAC‑TTTTTTTGATTTGCCC > W3110S.gb/4002808‑4002871
|
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:2039802/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:884141/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:793576/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:740235/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:657635/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:652986/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:625761/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:440486/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:389829/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:367498/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:359530/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:338288/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:2323705/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:2298220/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:2023754/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:2015333/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1123588/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1946375/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1938562/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1279216/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1681040/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1503152/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1498997/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1355353/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1306637/65‑1 (MQ=255)
ggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATCTGccc < 1:1841920/65‑1 (MQ=25)
gcgcATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1088700/64‑1 (MQ=255)
aTCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:411629/57‑1 (MQ=37)
aTCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1340591/57‑1 (MQ=37)
cggcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc > 1:1065111/1‑43 (MQ=38)
cggcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc > 1:31149/1‑43 (MQ=38)
cggcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc > 1:2160877/1‑43 (MQ=38)
cggcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc > 1:1053829/1‑43 (MQ=38)
cggcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc > 1:1960449/1‑43 (MQ=38)
|
GGCGCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGAC‑TTTTTTTGATTTGCCC > W3110S.gb/4002808‑4002871
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
