Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
W3110S.gb |
4,591,162 |
C→A |
V112V (GTG→GTT) |
hsdR ← |
endonuclease R |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | W3110S.gb | 4,591,162 | 0 | C | A | 100.0%
| 120.2
/ NA
| 35 | V112V (GTG→GTT) | hsdR | endonuclease R |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (0/35); total (0/35) |
GTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAG > W3110S.gb/4591138‑4591202
|
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:607036/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2358229/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2384840/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2499142/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:269402/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:287951/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:329466/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:359211/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:602217/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2267094/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:708485/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:72259/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:761545/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:780003/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:893354/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:897599/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:927020/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:138110/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:224833/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2216651/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2199738/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:138334/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2158135/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:202074/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2001746/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:1098319/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:1924251/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:1834367/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:1790845/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:1773581/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:1671704/65‑1 (MQ=255)
gTTGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:153540/65‑1 (MQ=255)
ttGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:1999547/64‑1 (MQ=255)
ttGAGATCGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACag < 1:2292156/64‑1 (MQ=255)
cGTTATGATATTCGTGAACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATTCag < 1:2161577/57‑1 (MQ=255)
|
GTTGAGATCGTTATGATATTCGTGCACCGCCTGGTTACCAATGCGGCGTAATTTGTGAAATACAG > W3110S.gb/4591138‑4591202
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A